RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 IP6K2Q9UHH9 426 aa11.84□□□□□ -0.51
SYNE1-237ENST00000539504 TYROBPO43914 113 aa11.84□□□□□ -0.51
SYNE1-237ENST00000539504 LPXNO60711 386 aa11.84□□□□□ -0.51
SYNE1-237ENST00000539504 KCNA3P22001 575 aa11.84□□□□□ -0.51
SYNE1-237ENST00000539504 SP100P23497 879 aaPredicted RBP11.84□□□□□ -0.51
SYNE1-237ENST00000539504 GAD2Q05329 585 aa11.84□□□□□ -0.51
SYNE1-237ENST00000539504 PTP4A2Q12974 167 aa11.84□□□□□ -0.51
SYNE1-237ENST00000539504 SPP2Q13103 211 aa11.84□□□□□ -0.51
SYNE1-237ENST00000539504 ZNF394Q53GI3 561 aa11.84□□□□□ -0.51
SYNE1-237ENST00000539504 MDH1BQ5I0G3 518 aa11.84□□□□□ -0.51
SYNE1-237ENST00000539504 DNAJC24Q6P3W2 148 aa11.84□□□□□ -0.51
SYNE1-237ENST00000539504 RSAD2Q8WXG1 361 aa11.84□□□□□ -0.51
SYNE1-237ENST00000539504 FAM161BQ96MY7 647 aa11.84□□□□□ -0.51
SYNE1-237ENST00000539504 SLITRK1Q96PX8 696 aa11.84□□□□□ -0.51
SYNE1-237ENST00000539504 TMEM120AQ9BXJ8 343 aa11.84□□□□□ -0.51
SYNE1-237ENST00000539504 TRIM4Q9C037 500 aa11.84□□□□□ -0.51
SYNE1-237ENST00000539504 COL20A1Q9P218 1284 aa11.84□□□□□ -0.51
SYNE1-237ENST00000539504 ARMCX1Q9P291 453 aa11.84□□□□□ -0.51
SYNE1-237ENST00000539504 ASTN2O75129 1339 aaPredicted RBP11.84□□□□□ -0.51
SYNE1-237ENST00000539504 F8VP50 259 aa11.84□□□□□ -0.51
SYNE1-237ENST00000539504 MAP3K7O43318 606 aa11.84□□□□□ -0.51
SYNE1-237ENST00000539504 AHCYL1O43865 530 aa11.84□□□□□ -0.51
SYNE1-237ENST00000539504 HNRNPCL1O60812 293 aaKnown RBP11.84□□□□□ -0.51
SYNE1-237ENST00000539504 VCPP55072 806 aaKnown RBP11.84□□□□□ -0.51
SYNE1-237ENST00000539504 THOC5Q13769 683 aaKnown RBP11.84□□□□□ -0.51
SYNE1-237ENST00000539504 ACSBG2Q5FVE4 666 aa11.84□□□□□ -0.51
SYNE1-237ENST00000539504 SPOCD1Q6ZMY3 1216 aa11.84□□□□□ -0.51
SYNE1-237ENST00000539504 ZNF333Q96JL9 665 aa11.84□□□□□ -0.51
SYNE1-237ENST00000539504 PRMT6Q96LA8 375 aaPredicted RBP11.84□□□□□ -0.51
SYNE1-237ENST00000539504 MFSD14AQ96MC6 490 aa11.84□□□□□ -0.51
SYNE1-237ENST00000539504 RANBP17Q9H2T7 1088 aaKnown RBP11.84□□□□□ -0.51
SYNE1-237ENST00000539504 ZWILCHQ9H900 591 aa11.84□□□□□ -0.51
SYNE1-237ENST00000539504 LRCH1Q9Y2L9 728 aa11.84□□□□□ -0.51
SYNE1-237ENST00000539504 TMX2Q9Y320 296 aa11.84□□□□□ -0.51
SYNE1-237ENST00000539504 POLRMTO00411 1230 aaKnown RBP11.83□□□□□ -0.51
SYNE1-237ENST00000539504 GSC2O15499 205 aa11.83□□□□□ -0.51
SYNE1-237ENST00000539504 BAG2O95816 211 aa11.83□□□□□ -0.51
SYNE1-237ENST00000539504 GLRA2P23416 452 aa11.83□□□□□ -0.51
SYNE1-237ENST00000539504 PGM1P36871 562 aa11.83□□□□□ -0.51
SYNE1-237ENST00000539504 NOMO3P69849 1222 aa11.83□□□□□ -0.51
SYNE1-237ENST00000539504 BASP1P80723 227 aaKnown RBP11.83□□□□□ -0.51
SYNE1-237ENST00000539504 CC2D2BQ6DHV5 1058 aa11.83□□□□□ -0.51
SYNE1-237ENST00000539504 IRGCQ6NXR0 463 aa11.83□□□□□ -0.51
SYNE1-237ENST00000539504 ABRAQ8N0Z2 381 aa11.83□□□□□ -0.51
SYNE1-237ENST00000539504 BSNDQ8WZ55 320 aa11.83□□□□□ -0.51
SYNE1-237ENST00000539504 FAM111AQ96PZ2 611 aa11.83□□□□□ -0.51
SYNE1-237ENST00000539504 TUBB6Q9BUF5 446 aa11.83□□□□□ -0.51
SYNE1-237ENST00000539504 COL24A1Q17RW2 1714 aa11.83□□□□□ -0.52
SYNE1-237ENST00000539504 DHX15O43143 795 aaKnown RBP11.83□□□□□ -0.52
SYNE1-237ENST00000539504 ECE2O60344 883 aa11.83□□□□□ -0.52
SYNE1-237ENST00000539504 GTF2H1P32780 548 aa11.83□□□□□ -0.52
SYNE1-237ENST00000539504 SLC39A4Q6P5W5 647 aa11.83□□□□□ -0.52
SYNE1-237ENST00000539504 LRRC74BQ6ZQY2 392 aa11.83□□□□□ -0.52
SYNE1-237ENST00000539504 FBXO36Q8NEA4 188 aa11.83□□□□□ -0.52
SYNE1-237ENST00000539504 CFAP61Q8NHU2 1237 aa11.83□□□□□ -0.52
SYNE1-237ENST00000539504 PRR11Q96HE9 360 aaPredicted RBP11.83□□□□□ -0.52
SYNE1-237ENST00000539504 GBP5Q96PP8 586 aa11.83□□□□□ -0.52
SYNE1-237ENST00000539504 WDR64B1ANS9 1081 aa11.83□□□□□ -0.52
SYNE1-237ENST00000539504 PSMG1O95456 288 aa11.83□□□□□ -0.52
SYNE1-237ENST00000539504 CYP1A1P04798 512 aaPredicted RBP11.83□□□□□ -0.52
SYNE1-237ENST00000539504 FESP07332 822 aa11.83□□□□□ -0.52
SYNE1-237ENST00000539504 UBTFL6P0CB48 400 aaPredicted RBP11.83□□□□□ -0.52
SYNE1-237ENST00000539504 BGNP21810 368 aa11.83□□□□□ -0.52
SYNE1-237ENST00000539504 GPX6P59796 221 aa11.83□□□□□ -0.52
SYNE1-237ENST00000539504 SLC34A1Q06495 639 aa11.83□□□□□ -0.52
SYNE1-237ENST00000539504 SMTNL2Q2TAL5 461 aa11.83□□□□□ -0.52
SYNE1-237ENST00000539504 KLHL38Q2WGJ6 581 aa11.83□□□□□ -0.52
SYNE1-237ENST00000539504 RNASEH2BQ5TBB1 312 aaKnown RBP11.83□□□□□ -0.52
SYNE1-237ENST00000539504 STRIP1Q5VSL9 837 aa11.83□□□□□ -0.52
SYNE1-237ENST00000539504 CTAGE3PQ8IX95 158 aa11.83□□□□□ -0.52
SYNE1-237ENST00000539504 ST6GALNAC4Q9H4F1 302 aa11.83□□□□□ -0.52
SYNE1-237ENST00000539504 TBC1D22BQ9NU19 505 aa11.83□□□□□ -0.52
SYNE1-237ENST00000539504 SHOC2Q9UQ13 582 aa11.83□□□□□ -0.52
SYNE1-237ENST00000539504 CHMP2BQ9UQN3 213 aa11.83□□□□□ -0.52
SYNE1-237ENST00000539504 NUMBLQ9Y6R0 609 aa11.83□□□□□ -0.52
SYNE1-237ENST00000539504 TRAFD1O14545 582 aaPredicted RBP11.82□□□□□ -0.52
SYNE1-237ENST00000539504 MAP3K13O43283 966 aa11.82□□□□□ -0.52
SYNE1-237ENST00000539504 ALDH1B1P30837 517 aa11.82□□□□□ -0.52
SYNE1-237ENST00000539504 YWHAGP61981 247 aaKnown RBP eCLIP11.82□□□□□ -0.52
SYNE1-237ENST00000539504 CUL2Q13617 745 aa11.82□□□□□ -0.52
SYNE1-237ENST00000539504 ANKRD22Q5VYY1 191 aa11.82□□□□□ -0.52
SYNE1-237ENST00000539504 TXNRD3NBQ6F5E7 133 aa11.82□□□□□ -0.52
SYNE1-237ENST00000539504 TRIM72Q6ZMU5 477 aa11.82□□□□□ -0.52
SYNE1-237ENST00000539504 TTC7BQ86TV6 843 aa11.82□□□□□ -0.52
SYNE1-237ENST00000539504 PDIK1LQ8N165 341 aa11.82□□□□□ -0.52
SYNE1-237ENST00000539504 ARHGAP24Q8N264 748 aa11.82□□□□□ -0.52
SYNE1-237ENST00000539504 ZNF516Q92618 1163 aa11.82□□□□□ -0.52
SYNE1-237ENST00000539504 PTPRN2Q92932 1015 aa11.82□□□□□ -0.52
SYNE1-237ENST00000539504 SYNCQ9H7C4 482 aa11.82□□□□□ -0.52
SYNE1-237ENST00000539504 INHBAP08476 426 aa11.82□□□□□ -0.52
SYNE1-237ENST00000539504 MYL2P10916 166 aa11.82□□□□□ -0.52
SYNE1-237ENST00000539504 NPR1P16066 1061 aa11.82□□□□□ -0.52
SYNE1-237ENST00000539504 SLC18A1P54219 525 aa11.82□□□□□ -0.52
SYNE1-237ENST00000539504 VPS72Q15906 364 aa11.82□□□□□ -0.52
SYNE1-237ENST00000539504 EFHC2Q5JST6 749 aa11.82□□□□□ -0.52
SYNE1-237ENST00000539504 C6orf163Q5TEZ5 329 aa11.82□□□□□ -0.52
SYNE1-237ENST00000539504 FAM160B2Q86V87 743 aa11.82□□□□□ -0.52
SYNE1-237ENST00000539504 C4orf19Q8IY42 314 aa11.82□□□□□ -0.52
SYNE1-237ENST00000539504 OGFOD1Q8N543 542 aa11.82□□□□□ -0.52
SYNE1-237ENST00000539504 WDR60Q8WVS4 1066 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms