RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 SEPT5Q99719 369 aaPredicted RBP14.68□□□□□ -0.06
SS18-204ENST00000539244 FAM83CQ9BQN1 747 aa14.68□□□□□ -0.06
SS18-204ENST00000539244 SLC46A2Q9BY10 475 aa14.68□□□□□ -0.06
SS18-204ENST00000539244 TCHHQ07283 1943 aa14.68□□□□□ -0.06
SS18-204ENST00000539244 CCDC163A0A0D9SF12 145 aa14.67□□□□□ -0.06
SS18-204ENST00000539244 LOC105378220A0A1B0GUY1 285 aaPredicted RBP14.67□□□□□ -0.06
SS18-204ENST00000539244 SOBPA7XYQ1 873 aa14.67□□□□□ -0.06
SS18-204ENST00000539244 CYB561D2O14569 222 aa14.67□□□□□ -0.06
SS18-204ENST00000539244 HAPLN1P10915 354 aaPredicted RBP14.67□□□□□ -0.06
SS18-204ENST00000539244 PLCG1P19174 1290 aa14.67□□□□□ -0.06
SS18-204ENST00000539244 NMT1P30419 496 aaKnown RBP14.67□□□□□ -0.06
SS18-204ENST00000539244 ACOT2P49753 483 aa14.67□□□□□ -0.06
SS18-204ENST00000539244 TAF6P49848 677 aa14.67□□□□□ -0.06
SS18-204ENST00000539244 TNK2Q07912 1038 aa14.67□□□□□ -0.06
SS18-204ENST00000539244 MCM6Q14566 821 aa14.67□□□□□ -0.06
SS18-204ENST00000539244 PTPAQ15257 358 aa14.67□□□□□ -0.06
SS18-204ENST00000539244 RABEP1Q15276 862 aa14.67□□□□□ -0.06
SS18-204ENST00000539244 SLFN12LQ6IEE8 588 aa14.67□□□□□ -0.06
SS18-204ENST00000539244 LRRTM3Q86VH5 581 aa14.67□□□□□ -0.06
SS18-204ENST00000539244 METTL23Q86XA0 190 aa14.67□□□□□ -0.06
SS18-204ENST00000539244 CMTM8Q8IZV2 173 aa14.67□□□□□ -0.06
SS18-204ENST00000539244 THEM5Q8N1Q8 247 aa14.67□□□□□ -0.06
SS18-204ENST00000539244 FAM160A2Q8N612 972 aaPredicted RBP14.67□□□□□ -0.06
SS18-204ENST00000539244 RAD54LQ92698 747 aa14.67□□□□□ -0.06
SS18-204ENST00000539244 THG1LQ9NWX6 298 aaKnown RBP14.67□□□□□ -0.06
SS18-204ENST00000539244 KMT2BQ9UMN6 2715 aaPredicted RBP14.67□□□□□ -0.06
SS18-204ENST00000539244 OBSL1O75147 1896 aa14.67□□□□□ -0.06
SS18-204ENST00000539244 ANKRD63C9JTQ0 380 aa14.66□□□□□ -0.06
SS18-204ENST00000539244 H3BQV1 296 aa14.66□□□□□ -0.06
SS18-204ENST00000539244 TBCAO75347 108 aaKnown RBP14.66□□□□□ -0.06
SS18-204ENST00000539244 BMP15O95972 392 aa14.66□□□□□ -0.06
SS18-204ENST00000539244 DDX6P26196 483 aaKnown RBP eCLIP14.66□□□□□ -0.06
SS18-204ENST00000539244 GJB2P29033 226 aa14.66□□□□□ -0.06
SS18-204ENST00000539244 LONP1P36776 959 aaKnown RBP14.66□□□□□ -0.06
SS18-204ENST00000539244 DHX8Q14562 1220 aaKnown RBP14.66□□□□□ -0.06
SS18-204ENST00000539244 C8orf34Q49A92 452 aa14.66□□□□□ -0.06
SS18-204ENST00000539244 TMEM196Q5HYL7 178 aa14.66□□□□□ -0.06
SS18-204ENST00000539244 HEATR6Q6AI08 1181 aaKnown RBP14.66□□□□□ -0.06
SS18-204ENST00000539244 ADALQ6DHV7 355 aa14.66□□□□□ -0.06
SS18-204ENST00000539244 TMEM150AQ86TG1 271 aa14.66□□□□□ -0.06
SS18-204ENST00000539244 NT5DC4Q86YG4 428 aa14.66□□□□□ -0.06
SS18-204ENST00000539244 TTC8Q8TAM2 541 aa14.66□□□□□ -0.06
SS18-204ENST00000539244 CHFRQ96EP1 664 aa14.66□□□□□ -0.06
SS18-204ENST00000539244 LOXL4Q96JB6 756 aa14.66□□□□□ -0.06
SS18-204ENST00000539244 TMX3Q96JJ7 454 aa14.66□□□□□ -0.06
SS18-204ENST00000539244 PYM1Q9BRP8 204 aaKnown RBP14.66□□□□□ -0.06
SS18-204ENST00000539244 HPS4Q9NQG7 708 aa14.66□□□□□ -0.06
SS18-204ENST00000539244 DPP3Q9NY33 737 aa14.66□□□□□ -0.06
SS18-204ENST00000539244 AGO2Q9UKV8 859 aaKnown RBP14.66□□□□□ -0.06
SS18-204ENST00000539244 ZNF638Q14966 1978 aaKnown RBP14.65□□□□□ -0.06
SS18-204ENST00000539244 TRDMT1O14717 391 aaKnown RBP14.65□□□□□ -0.06
SS18-204ENST00000539244 PPP1R37O75864 691 aa14.65□□□□□ -0.06
SS18-204ENST00000539244 F11P03951 625 aa14.65□□□□□ -0.06
SS18-204ENST00000539244 HMGA1P17096 107 aaKnown RBP14.65□□□□□ -0.06
SS18-204ENST00000539244 LIMK1P53667 647 aa14.65□□□□□ -0.06
SS18-204ENST00000539244 NLRP12P59046 1061 aa14.65□□□□□ -0.06
SS18-204ENST00000539244 RUNX3Q13761 415 aa14.65□□□□□ -0.06
SS18-204ENST00000539244 KARSQ15046 597 aaKnown RBP14.65□□□□□ -0.06
SS18-204ENST00000539244 ZC2HC1CQ53FD0 456 aaPredicted RBP14.65□□□□□ -0.06
SS18-204ENST00000539244 PPM1JQ5JR12 505 aa14.65□□□□□ -0.06
SS18-204ENST00000539244 WSCD1Q658N2 575 aa14.65□□□□□ -0.06
SS18-204ENST00000539244 CRELD2Q6UXH1 353 aaPredicted RBP14.65□□□□□ -0.06
SS18-204ENST00000539244 EFCAB13Q8IY85 973 aa14.65□□□□□ -0.06
SS18-204ENST00000539244 DCP1BQ8IZD4 617 aaKnown RBP14.65□□□□□ -0.06
SS18-204ENST00000539244 LARP4BQ92615 738 aaKnown RBP14.65□□□□□ -0.06
SS18-204ENST00000539244 HVCN1Q96D96 273 aa14.65□□□□□ -0.06
SS18-204ENST00000539244 SMG9Q9H0W8 520 aaKnown RBP14.65□□□□□ -0.06
SS18-204ENST00000539244 KIF9Q9HAQ2 790 aa14.65□□□□□ -0.06
SS18-204ENST00000539244 GKN1Q9NS71 199 aa14.65□□□□□ -0.06
SS18-204ENST00000539244 SDK1Q7Z5N4 2213 aa14.65□□□□□ -0.06
SS18-204ENST00000539244 CNOT1A5YKK6 2376 aaKnown RBP14.65□□□□□ -0.07
SS18-204ENST00000539244 KPNA7A9QM74 516 aa14.64□□□□□ -0.07
SS18-204ENST00000539244 TISP43B9A030 160 aa14.64□□□□□ -0.07
SS18-204ENST00000539244 EXTL3O43909 919 aa14.64□□□□□ -0.07
SS18-204ENST00000539244 GDF9O60383 454 aa14.64□□□□□ -0.07
SS18-204ENST00000539244 IL18RAPO95256 599 aa14.64□□□□□ -0.07
SS18-204ENST00000539244 KRT18P05783 430 aaKnown RBP14.64□□□□□ -0.07
SS18-204ENST00000539244 ADSSP30520 456 aa14.64□□□□□ -0.07
SS18-204ENST00000539244 HOXC13P31276 330 aa14.64□□□□□ -0.07
SS18-204ENST00000539244 DDIT3P35638 169 aa14.64□□□□□ -0.07
SS18-204ENST00000539244 AVPR1AP37288 418 aa14.64□□□□□ -0.07
SS18-204ENST00000539244 RAP1GAPP47736 663 aa14.64□□□□□ -0.07
SS18-204ENST00000539244 GRIN1Q05586 938 aa14.64□□□□□ -0.07
SS18-204ENST00000539244 ZNF268Q14587 947 aaPredicted RBP14.64□□□□□ -0.07
SS18-204ENST00000539244 POSTNQ15063 836 aa14.64□□□□□ -0.07
SS18-204ENST00000539244 TAF12Q16514 161 aa14.64□□□□□ -0.07
SS18-204ENST00000539244 SV2CQ496J9 727 aa14.64□□□□□ -0.07
SS18-204ENST00000539244 FSTL4Q6MZW2 842 aa14.64□□□□□ -0.07
SS18-204ENST00000539244 PKN3Q6P5Z2 889 aa14.64□□□□□ -0.07
SS18-204ENST00000539244 CEP68Q76N32 757 aa14.64□□□□□ -0.07
SS18-204ENST00000539244 ZNF720Q7Z2F6 126 aa14.64□□□□□ -0.07
SS18-204ENST00000539244 GIPC2Q8TF65 315 aa14.64□□□□□ -0.07
SS18-204ENST00000539244 LEO1Q8WVC0 666 aaPredicted RBP14.64□□□□□ -0.07
SS18-204ENST00000539244 GAB3Q8WWW8 586 aa14.64□□□□□ -0.07
SS18-204ENST00000539244 DDX1Q92499 740 aaKnown RBP14.64□□□□□ -0.07
SS18-204ENST00000539244 USP13Q92995 863 aaPredicted RBP14.64□□□□□ -0.07
SS18-204ENST00000539244 ZNF560Q96MR9 790 aa14.64□□□□□ -0.07
SS18-204ENST00000539244 STRA6Q9BX79 667 aa14.64□□□□□ -0.07
SS18-204ENST00000539244 ZHX3Q9H4I2 956 aa14.64□□□□□ -0.07
SS18-204ENST00000539244 ABI2Q9NYB9 513 aaPredicted RBP14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms