RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 CTHP32929 405 aa13.56□□□□□ -0.24
CLSTN3-208ENST00000538933 CACNB1Q02641 598 aaPredicted RBP13.56□□□□□ -0.24
CLSTN3-208ENST00000538933 SH3PXD2AQ5TCZ1 1133 aa13.56□□□□□ -0.24
CLSTN3-208ENST00000538933 ANKS3Q6ZW76 656 aa13.56□□□□□ -0.24
CLSTN3-208ENST00000538933 SYNPOQ8N3V7 929 aa13.56□□□□□ -0.24
CLSTN3-208ENST00000538933 MCPH1Q8NEM0 835 aa13.56□□□□□ -0.24
CLSTN3-208ENST00000538933 ZSCAN18Q8TBC5 510 aaPredicted RBP13.56□□□□□ -0.24
CLSTN3-208ENST00000538933 ZCCHC14Q8WYQ9 949 aaKnown RBP13.56□□□□□ -0.24
CLSTN3-208ENST00000538933 ERCC4Q92889 916 aaPredicted RBP13.56□□□□□ -0.24
CLSTN3-208ENST00000538933 RUSC1Q9BVN2 902 aa13.56□□□□□ -0.24
CLSTN3-208ENST00000538933 TIPINQ9BVW5 301 aa13.56□□□□□ -0.24
CLSTN3-208ENST00000538933 SNTG2Q9NY99 539 aa13.56□□□□□ -0.24
CLSTN3-208ENST00000538933 CEP72Q9P209 647 aa13.56□□□□□ -0.24
CLSTN3-208ENST00000538933 CFAP46Q8IYW2 2715 aa13.55□□□□□ -0.24
CLSTN3-208ENST00000538933 NPHP3-ACAD11A0A0J9YXS1 232 aa13.55□□□□□ -0.24
CLSTN3-208ENST00000538933 I3L4J1 428 aa13.55□□□□□ -0.24
CLSTN3-208ENST00000538933 AKAP3O75969 853 aa13.55□□□□□ -0.24
CLSTN3-208ENST00000538933 RPN1P04843 607 aaKnown RBP13.55□□□□□ -0.24
CLSTN3-208ENST00000538933 CEACAM1P13688 526 aa13.55□□□□□ -0.24
CLSTN3-208ENST00000538933 GJA1P17302 382 aa13.55□□□□□ -0.24
CLSTN3-208ENST00000538933 DPYDQ12882 1025 aa13.55□□□□□ -0.24
CLSTN3-208ENST00000538933 TFDP1Q14186 410 aa13.55□□□□□ -0.24
CLSTN3-208ENST00000538933 PLK5Q496M5 336 aa13.55□□□□□ -0.24
CLSTN3-208ENST00000538933 SOWAHCQ53LP3 525 aaPredicted RBP13.55□□□□□ -0.24
CLSTN3-208ENST00000538933 PDZD4Q76G19 769 aaPredicted RBP13.55□□□□□ -0.24
CLSTN3-208ENST00000538933 RALGPS2Q86X27 583 aaPredicted RBP13.55□□□□□ -0.24
CLSTN3-208ENST00000538933 C3orf58Q8NDZ4 430 aa13.55□□□□□ -0.24
CLSTN3-208ENST00000538933 CSGALNACT1Q8TDX6 532 aa13.55□□□□□ -0.24
CLSTN3-208ENST00000538933 DRC1Q96MC2 740 aa13.55□□□□□ -0.24
CLSTN3-208ENST00000538933 REEP2Q9BRK0 252 aa13.55□□□□□ -0.24
CLSTN3-208ENST00000538933 EDEM2Q9BV94 578 aa13.55□□□□□ -0.24
CLSTN3-208ENST00000538933 DUSP15Q9H1R2 295 aaPredicted RBP13.55□□□□□ -0.24
CLSTN3-208ENST00000538933 PANK4Q9NVE7 773 aa13.55□□□□□ -0.24
CLSTN3-208ENST00000538933 KIAA1468Q9P260 1216 aa13.55□□□□□ -0.24
CLSTN3-208ENST00000538933 ODF2LQ9ULJ1 636 aa13.55□□□□□ -0.24
CLSTN3-208ENST00000538933 PCDHA5Q9Y5H7 936 aa13.55□□□□□ -0.24
CLSTN3-208ENST00000538933 INSL5Q9Y5Q6 135 aa13.55□□□□□ -0.24
CLSTN3-208ENST00000538933 NUP210Q8TEM1 1887 aaPredicted RBP13.55□□□□□ -0.24
CLSTN3-208ENST00000538933 SYCE3A1L190 88 aa13.54□□□□□ -0.24
CLSTN3-208ENST00000538933 BIN1O00499 593 aa13.54□□□□□ -0.24
CLSTN3-208ENST00000538933 PRRG1O14668 218 aa13.54□□□□□ -0.24
CLSTN3-208ENST00000538933 HIP1RO75146 1068 aa13.54□□□□□ -0.24
CLSTN3-208ENST00000538933 RECQL4O94761 1208 aa13.54□□□□□ -0.24
CLSTN3-208ENST00000538933 B3GAT3O94766 335 aa13.54□□□□□ -0.24
CLSTN3-208ENST00000538933 GAP43P17677 238 aa13.54□□□□□ -0.24
CLSTN3-208ENST00000538933 CSRP1P21291 193 aaKnown RBP13.54□□□□□ -0.24
CLSTN3-208ENST00000538933 GUCY2CP25092 1073 aa13.54□□□□□ -0.24
CLSTN3-208ENST00000538933 CLCNKBP51801 687 aa13.54□□□□□ -0.24
CLSTN3-208ENST00000538933 KPNA1P52294 538 aaPredicted RBP13.54□□□□□ -0.24
CLSTN3-208ENST00000538933 MRPL58Q14197 206 aaKnown RBP13.54□□□□□ -0.24
CLSTN3-208ENST00000538933 PON2Q15165 354 aa13.54□□□□□ -0.24
CLSTN3-208ENST00000538933 UPP1Q16831 310 aa13.54□□□□□ -0.24
CLSTN3-208ENST00000538933 ZSCAN23Q3MJ62 389 aa13.54□□□□□ -0.24
CLSTN3-208ENST00000538933 CYP4A22Q5TCH4 519 aa13.54□□□□□ -0.24
CLSTN3-208ENST00000538933 CNNM4Q6P4Q7 775 aa13.54□□□□□ -0.24
CLSTN3-208ENST00000538933 PPP4R3CPQ6ZMV5 832 aa13.54□□□□□ -0.24
CLSTN3-208ENST00000538933 C1orf186Q6ZWK4 172 aa13.54□□□□□ -0.24
CLSTN3-208ENST00000538933 UNC13DQ70J99 1090 aa13.54□□□□□ -0.24
CLSTN3-208ENST00000538933 MYCT1Q8N699 235 aa13.54□□□□□ -0.24
CLSTN3-208ENST00000538933 KIFAP3Q92845 792 aa13.54□□□□□ -0.24
CLSTN3-208ENST00000538933 E2F7Q96AV8 911 aa13.54□□□□□ -0.24
CLSTN3-208ENST00000538933 IFT74Q96LB3 600 aa13.54□□□□□ -0.24
CLSTN3-208ENST00000538933 GSDMAQ96QA5 445 aa13.54□□□□□ -0.24
CLSTN3-208ENST00000538933 PPP1R10Q96QC0 940 aaKnown RBP13.54□□□□□ -0.24
CLSTN3-208ENST00000538933 LRRC3Q9BY71 257 aa13.54□□□□□ -0.24
CLSTN3-208ENST00000538933 FZD8Q9H461 694 aa13.54□□□□□ -0.24
CLSTN3-208ENST00000538933 CYP4F11Q9HBI6 524 aa13.54□□□□□ -0.24
CLSTN3-208ENST00000538933 GTSE1Q9NYZ3 720 aa13.54□□□□□ -0.24
CLSTN3-208ENST00000538933 PVALEFA0A1B0GWK0 134 aa13.53□□□□□ -0.24
CLSTN3-208ENST00000538933 LNP1A1A4G5 178 aa13.53□□□□□ -0.24
CLSTN3-208ENST00000538933 CDX4O14627 284 aaPredicted RBP13.53□□□□□ -0.24
CLSTN3-208ENST00000538933 ELF1P32519 619 aa13.53□□□□□ -0.24
CLSTN3-208ENST00000538933 BRCC3P46736 316 aa13.53□□□□□ -0.24
CLSTN3-208ENST00000538933 PPP2R5AQ15172 486 aa13.53□□□□□ -0.24
CLSTN3-208ENST00000538933 TEAD2Q15562 447 aa13.53□□□□□ -0.24
CLSTN3-208ENST00000538933 KMT5BQ4FZB7 885 aa13.53□□□□□ -0.24
CLSTN3-208ENST00000538933 ARSHQ5FYA8 562 aa13.53□□□□□ -0.24
CLSTN3-208ENST00000538933 ISM2Q6H9L7 571 aa13.53□□□□□ -0.24
CLSTN3-208ENST00000538933 TTC8Q8TAM2 541 aa13.53□□□□□ -0.24
CLSTN3-208ENST00000538933 SHKBP1Q8TBC3 707 aa13.53□□□□□ -0.24
CLSTN3-208ENST00000538933 GTPBP4Q9BZE4 634 aaKnown RBP13.53□□□□□ -0.24
CLSTN3-208ENST00000538933 POLR3FQ9H1D9 316 aaPredicted RBP13.53□□□□□ -0.24
CLSTN3-208ENST00000538933 PDZD7Q9H5P4 517 aa13.53□□□□□ -0.24
CLSTN3-208ENST00000538933 PARVGQ9HBI0 331 aa13.53□□□□□ -0.24
CLSTN3-208ENST00000538933 LARSQ9P2J5 1176 aaKnown RBP13.53□□□□□ -0.24
CLSTN3-208ENST00000538933 KCNG1Q9UIX4 513 aa13.53□□□□□ -0.24
CLSTN3-208ENST00000538933 NEUROG3Q9Y4Z2 214 aa13.53□□□□□ -0.24
CLSTN3-208ENST00000538933 THADAQ6YHU6 1953 aa13.52□□□□□ -0.24
CLSTN3-208ENST00000538933 BCLAF3A2AJT9 711 aaKnown RBP13.52□□□□□ -0.25
CLSTN3-208ENST00000538933 CCDC192P0DO97 292 aa13.52□□□□□ -0.25
CLSTN3-208ENST00000538933 MYL4P12829 197 aa13.52□□□□□ -0.25
CLSTN3-208ENST00000538933 SMTNP53814 917 aa13.52□□□□□ -0.25
CLSTN3-208ENST00000538933 DMP1Q13316 513 aaPredicted RBP13.52□□□□□ -0.25
CLSTN3-208ENST00000538933 STIM1Q13586 685 aa13.52□□□□□ -0.25
CLSTN3-208ENST00000538933 KCNB1Q14721 858 aa13.52□□□□□ -0.25
CLSTN3-208ENST00000538933 STX1AQ16623 288 aa13.52□□□□□ -0.25
CLSTN3-208ENST00000538933 FAM187BQ17R55 369 aa13.52□□□□□ -0.25
CLSTN3-208ENST00000538933 L1TD1Q5T7N2 865 aaKnown RBP13.52□□□□□ -0.25
CLSTN3-208ENST00000538933 TPGS2Q68CL5 300 aa13.52□□□□□ -0.25
CLSTN3-208ENST00000538933 STXBP4Q6ZWJ1 553 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms