RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 FGF19O95750 216 aa9.12□□□□□ -0.95
USP28-203ENST00000537490 IDEP14735 1019 aa9.12□□□□□ -0.95
USP28-203ENST00000537490 HMGA1P17096 107 aaKnown RBP9.12□□□□□ -0.95
USP28-203ENST00000537490 GAP43P17677 238 aa9.12□□□□□ -0.95
USP28-203ENST00000537490 PDCP20941 246 aa9.12□□□□□ -0.95
USP28-203ENST00000537490 TGM1P22735 817 aa9.12□□□□□ -0.95
USP28-203ENST00000537490 WEE1P30291 646 aa9.12□□□□□ -0.95
USP28-203ENST00000537490 POLR2BP30876 1174 aaKnown RBP9.12□□□□□ -0.95
USP28-203ENST00000537490 CXCL12P48061 93 aa9.12□□□□□ -0.95
USP28-203ENST00000537490 GPR15P49685 360 aa9.12□□□□□ -0.95
USP28-203ENST00000537490 CCR3P51677 355 aa9.12□□□□□ -0.95
USP28-203ENST00000537490 TFAMQ00059 246 aaKnown RBP9.12□□□□□ -0.95
USP28-203ENST00000537490 TNK2Q07912 1038 aa9.12□□□□□ -0.95
USP28-203ENST00000537490 DMWDQ09019 674 aa9.12□□□□□ -0.95
USP28-203ENST00000537490 PUM1Q14671 1186 aaKnown RBP eCLIP9.12□□□□□ -0.95
USP28-203ENST00000537490 VEPH1Q14D04 833 aa9.12□□□□□ -0.95
USP28-203ENST00000537490 RSPO4Q2I0M5 234 aaPredicted RBP9.12□□□□□ -0.95
USP28-203ENST00000537490 SV2CQ496J9 727 aa9.12□□□□□ -0.95
USP28-203ENST00000537490 ARHGAP29Q52LW3 1261 aa9.12□□□□□ -0.95
USP28-203ENST00000537490 ARHGAP15Q53QZ3 475 aa9.12□□□□□ -0.95
USP28-203ENST00000537490 DGLUCYQ7Z3D6 616 aa9.12□□□□□ -0.95
USP28-203ENST00000537490 TMEM150AQ86TG1 271 aa9.12□□□□□ -0.95
USP28-203ENST00000537490 NT5DC4Q86YG4 428 aa9.12□□□□□ -0.95
USP28-203ENST00000537490 BRSK2Q8IWQ3 736 aa9.12□□□□□ -0.95
USP28-203ENST00000537490 C1orf127Q8N9H9 656 aa9.12□□□□□ -0.95
USP28-203ENST00000537490 STKLD1Q8NE28 680 aa9.12□□□□□ -0.95
USP28-203ENST00000537490 SPPL2BQ8TCT7 592 aa9.12□□□□□ -0.95
USP28-203ENST00000537490 BPIFB1Q8TDL5 484 aa9.12□□□□□ -0.95
USP28-203ENST00000537490 C2orf15Q8WU43 125 aaKnown RBP9.12□□□□□ -0.95
USP28-203ENST00000537490 USP28Q96RU2 1077 aa9.12□□□□□ -0.95
USP28-203ENST00000537490 IER2Q9BTL4 223 aa9.12□□□□□ -0.95
USP28-203ENST00000537490 FAM126AQ9BYI3 521 aaPredicted RBP9.12□□□□□ -0.95
USP28-203ENST00000537490 OBP2AQ9NY56 170 aa9.12□□□□□ -0.95
USP28-203ENST00000537490 ABI2Q9NYB9 513 aaPredicted RBP9.12□□□□□ -0.95
USP28-203ENST00000537490 DLL3Q9NYJ7 618 aa9.12□□□□□ -0.95
USP28-203ENST00000537490 AGAP1Q9UPQ3 857 aa9.12□□□□□ -0.95
USP28-203ENST00000537490 EXOC7Q9UPT5 735 aa9.12□□□□□ -0.95
USP28-203ENST00000537490 MTMR6Q9Y217 621 aa9.12□□□□□ -0.95
USP28-203ENST00000537490 COL4A2P08572 1712 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 PATJQ8NI35 1801 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 FRMD3A2A2Y4 597 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 CHURC1-FNTBB4DL54 471 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 PRPF40AO75400 957 aaKnown RBP9.11□□□□□ -0.95
USP28-203ENST00000537490 PRPF6O94906 941 aaKnown RBP9.11□□□□□ -0.95
USP28-203ENST00000537490 F11P03951 625 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 ITGB3P05106 788 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 GARTP22102 1010 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 CDC25CP30307 473 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 HOXC13P31276 330 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 CTHP32929 405 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 TXLNAP40222 546 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 FNTBP49356 437 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 NRLP54845 237 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 SMARCB1Q12824 385 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 SLC39A14Q15043 492 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 PON2Q15165 354 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 TAF12Q16514 161 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 LPAL2Q16609 132 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 SDHAF4Q5VUM1 108 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 CCDC73Q6ZRK6 1079 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 Q6ZS52 159 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 OSTM1Q86WC4 334 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 RALGPS2Q86X27 583 aaPredicted RBP9.11□□□□□ -0.95
USP28-203ENST00000537490 DCP1BQ8IZD4 617 aaKnown RBP9.11□□□□□ -0.95
USP28-203ENST00000537490 SYCP3Q8IZU3 236 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 CMTM8Q8IZV2 173 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 PDCL2Q8N4E4 241 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 SPEM1Q8N4L4 309 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 CSGALNACT2Q8N6G5 542 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 CXorf38Q8TB03 319 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 MSANTD3Q96H12 275 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 ZNF560Q96MR9 790 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 CBWD1Q9BRT8 395 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 PI4K2AQ9BTU6 479 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 PCIF1Q9H4Z3 704 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 PDE11AQ9HCR9 933 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 PARD6AQ9NPB6 346 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 OLFML3Q9NRN5 406 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 GKN1Q9NS71 199 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 PANK4Q9NVE7 773 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 C2orf42Q9NWW7 574 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 DDX43Q9NXZ2 648 aaKnown RBP9.11□□□□□ -0.95
USP28-203ENST00000537490 L1RE1Q9UN81 338 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 PCDHB5Q9Y5E4 795 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 PCDHB13Q9Y5F0 798 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 CFAP54Q96N23 3096 aa9.11□□□□□ -0.95
USP28-203ENST00000537490 SCN1AP35498 2009 aa9.1□□□□□ -0.95
USP28-203ENST00000537490 DMDP11532 3685 aa9.1□□□□□ -0.95
USP28-203ENST00000537490 K7ESF4 209 aa9.1□□□□□ -0.95
USP28-203ENST00000537490 HRO43593 1189 aa9.1□□□□□ -0.95
USP28-203ENST00000537490 HCRTO43612 131 aa9.1□□□□□ -0.95
USP28-203ENST00000537490 EXTL3O43909 919 aa9.1□□□□□ -0.95
USP28-203ENST00000537490 LDHAP00338 332 aaKnown RBP9.1□□□□□ -0.95
USP28-203ENST00000537490 ACAT1P24752 427 aaKnown RBP9.1□□□□□ -0.95
USP28-203ENST00000537490 PNPLA4P41247 253 aa9.1□□□□□ -0.95
USP28-203ENST00000537490 STAT6P42226 847 aa9.1□□□□□ -0.95
USP28-203ENST00000537490 NLRP12P59046 1061 aa9.1□□□□□ -0.95
USP28-203ENST00000537490 PLCB2Q00722 1185 aa9.1□□□□□ -0.95
USP28-203ENST00000537490 TSPY1Q01534 308 aa9.1□□□□□ -0.95
USP28-203ENST00000537490 BFSP1Q12934 665 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms