RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	BHMT2	Q9H2M3	363 aa		6.22	□□□□□ -1.41
CD44-231	ENST00000531110	AASDHPPT	Q9NRN7	309 aa		6.22	□□□□□ -1.41
CD44-231	ENST00000531110	RGL1	Q9NZL6	768 aa		6.22	□□□□□ -1.41
CD44-231	ENST00000531110	HDAC6	Q9UBN7	1215 aa		6.22	□□□□□ -1.41
CD44-231	ENST00000531110	PCSK1N	Q9UHG2	260 aa		6.22	□□□□□ -1.41
CD44-231	ENST00000531110	DDX25	Q9UHL0	483 aa	Known RBP	6.22	□□□□□ -1.41
CD44-231	ENST00000531110	PNMA8B	Q9ULN7	279 aa	Predicted RBP	6.22	□□□□□ -1.41
CD44-231	ENST00000531110	SSX2IP	Q9Y2D8	614 aa		6.22	□□□□□ -1.41
CD44-231	ENST00000531110	GMEB1	Q9Y692	573 aa		6.22	□□□□□ -1.41
CD44-231	ENST00000531110	PPIP5K1	Q6PFW1	1433 aa		6.22	□□□□□ -1.41
CD44-231	ENST00000531110	SETD5	Q9C0A6	1442 aa		6.22	□□□□□ -1.41
CD44-231	ENST00000531110	USP19	O94966	1318 aa		6.22	□□□□□ -1.41
CD44-231	ENST00000531110	ELP1	O95163	1332 aa		6.22	□□□□□ -1.41
CD44-231	ENST00000531110	PTPRC	P08575	1304 aa		6.22	□□□□□ -1.41
CD44-231	ENST00000531110	CCDC88B	A6NC98	1476 aa		6.22	□□□□□ -1.41
CD44-231	ENST00000531110	GOLGA6L9	A6NEM1	432 aa		6.21	□□□□□ -1.42
CD44-231	ENST00000531110	ENO4	A6NNW6	628 aa		6.21	□□□□□ -1.42
CD44-231	ENST00000531110	LIN7A	O14910	233 aa	Predicted RBP	6.21	□□□□□ -1.42
CD44-231	ENST00000531110	CHUK	O15111	745 aa		6.21	□□□□□ -1.42
CD44-231	ENST00000531110	RFPL1	O75677	317 aa		6.21	□□□□□ -1.42
CD44-231	ENST00000531110	NEBL	O76041	1014 aa		6.21	□□□□□ -1.42
CD44-231	ENST00000531110	S100B	P04271	92 aa	Predicted RBP	6.21	□□□□□ -1.42
CD44-231	ENST00000531110	XBP1	P17861	261 aa		6.21	□□□□□ -1.42
CD44-231	ENST00000531110	SCNN1G	P51170	649 aa		6.21	□□□□□ -1.42
CD44-231	ENST00000531110	TRIM29	Q14134	588 aa		6.21	□□□□□ -1.42
CD44-231	ENST00000531110	RAB39A	Q14964	217 aa		6.21	□□□□□ -1.42
CD44-231	ENST00000531110	PREPL	Q4J6C6	727 aa	Predicted RBP	6.21	□□□□□ -1.42
CD44-231	ENST00000531110	CCDC92	Q53HC0	331 aa	Predicted RBP	6.21	□□□□□ -1.42
CD44-231	ENST00000531110	DACT2	Q5SW24	774 aa		6.21	□□□□□ -1.42
CD44-231	ENST00000531110	SFMBT2	Q5VUG0	894 aa		6.21	□□□□□ -1.42
CD44-231	ENST00000531110	NUGGC	Q68CJ6	796 aa		6.21	□□□□□ -1.42
CD44-231	ENST00000531110	ISM2	Q6H9L7	571 aa		6.21	□□□□□ -1.42
CD44-231	ENST00000531110	CCDC174	Q6PII3	467 aa		6.21	□□□□□ -1.42
CD44-231	ENST00000531110	DBX2	Q6ZNG2	339 aa		6.21	□□□□□ -1.42
CD44-231	ENST00000531110	CCDC50	Q8IVM0	306 aa		6.21	□□□□□ -1.42
CD44-231	ENST00000531110	CCAR1	Q8IX12	1150 aa	Known RBP	6.21	□□□□□ -1.42
CD44-231	ENST00000531110	PEX5L	Q8IYB4	626 aa		6.21	□□□□□ -1.42
CD44-231	ENST00000531110	AFAP1	Q8N556	730 aa		6.21	□□□□□ -1.42
CD44-231	ENST00000531110	FAM81A	Q8TBF8	368 aa		6.21	□□□□□ -1.42
CD44-231	ENST00000531110	GOLGA1	Q92805	767 aa		6.21	□□□□□ -1.42
CD44-231	ENST00000531110	NACC2	Q96BF6	587 aa		6.21	□□□□□ -1.42
CD44-231	ENST00000531110	DCLRE1C	Q96SD1	692 aa	Known RBP	6.21	□□□□□ -1.42
CD44-231	ENST00000531110	INO80B	Q9C086	356 aa	Predicted RBP	6.21	□□□□□ -1.42
CD44-231	ENST00000531110	CDH19	Q9H159	772 aa		6.21	□□□□□ -1.42
CD44-231	ENST00000531110	TDP1	Q9NUW8	608 aa		6.21	□□□□□ -1.42
CD44-231	ENST00000531110	PARPBP	Q9NWS1	579 aa		6.21	□□□□□ -1.42
CD44-231	ENST00000531110	COMMD8	Q9NX08	183 aa		6.21	□□□□□ -1.42
CD44-231	ENST00000531110	AJAP1	Q9UKB5	411 aa	Predicted RBP	6.21	□□□□□ -1.42
CD44-231	ENST00000531110	LIMCH1	Q9UPQ0	1083 aa		6.21	□□□□□ -1.42
CD44-231	ENST00000531110	SOGA1	O94964	1423 aa		6.21	□□□□□ -1.42
CD44-231	ENST00000531110	CNTLN	Q9NXG0	1405 aa		6.21	□□□□□ -1.42
CD44-231	ENST00000531110	PLEKHH2	Q8IVE3	1493 aa		6.21	□□□□□ -1.42
CD44-231	ENST00000531110	MAPKBP1	O60336	1514 aa		6.2	□□□□□ -1.42
CD44-231	ENST00000531110	CLIP1	P30622	1438 aa		6.2	□□□□□ -1.42
CD44-231	ENST00000531110	AKNA	Q7Z591	1439 aa		6.2	□□□□□ -1.42
CD44-231	ENST00000531110	CCDC154	A6NI56	674 aa		6.2	□□□□□ -1.42
CD44-231	ENST00000531110	GRXCR1	A8MXD5	290 aa		6.2	□□□□□ -1.42
CD44-231	ENST00000531110	CHL1	O00533	1208 aa		6.2	□□□□□ -1.42
CD44-231	ENST00000531110	SLC16A6	O15403	523 aa		6.2	□□□□□ -1.42
CD44-231	ENST00000531110	AKAP10	O43572	662 aa		6.2	□□□□□ -1.42
CD44-231	ENST00000531110	PEX14	O75381	377 aa		6.2	□□□□□ -1.42
CD44-231	ENST00000531110	WDHD1	O75717	1129 aa	Predicted RBP	6.2	□□□□□ -1.42
CD44-231	ENST00000531110	AMY1A	P04745	511 aa		6.2	□□□□□ -1.42
CD44-231	ENST00000531110	FXR1	P51114	621 aa	Known RBP eCLIP	6.2	□□□□□ -1.42
CD44-231	ENST00000531110	RAB27A	P51159	221 aa		6.2	□□□□□ -1.42
CD44-231	ENST00000531110	CTXN1	P60606	82 aa		6.2	□□□□□ -1.42
CD44-231	ENST00000531110	TOB2	Q14106	344 aa	Predicted RBP	6.2	□□□□□ -1.42
CD44-231	ENST00000531110	CCDC152	Q4G0S7	254 aa		6.2	□□□□□ -1.42
CD44-231	ENST00000531110	USP39	Q53GS9	565 aa	Known RBP	6.2	□□□□□ -1.42
CD44-231	ENST00000531110	MIIP	Q5JXC2	388 aa		6.2	□□□□□ -1.42
CD44-231	ENST00000531110	AFMID	Q63HM1	303 aa		6.2	□□□□□ -1.42
CD44-231	ENST00000531110	EFCAB12	Q6NXP0	572 aa		6.2	□□□□□ -1.42
CD44-231	ENST00000531110	TADA2B	Q86TJ2	420 aa		6.2	□□□□□ -1.42
CD44-231	ENST00000531110	TTC7B	Q86TV6	843 aa		6.2	□□□□□ -1.42
CD44-231	ENST00000531110	CEP57	Q86XR8	500 aa		6.2	□□□□□ -1.42
CD44-231	ENST00000531110	PLXDC1	Q8IUK5	500 aa		6.2	□□□□□ -1.42
CD44-231	ENST00000531110	RHOT1	Q8IXI2	618 aa		6.2	□□□□□ -1.42
CD44-231	ENST00000531110	MYO1H	Q8N1T3	1032 aa		6.2	□□□□□ -1.42
CD44-231	ENST00000531110	PRR18	Q8N4B5	295 aa		6.2	□□□□□ -1.42
CD44-231	ENST00000531110	MB21D1	Q8N884	522 aa		6.2	□□□□□ -1.42
CD44-231	ENST00000531110	C1orf131	Q8NDD1	294 aa	Known RBP	6.2	□□□□□ -1.42
CD44-231	ENST00000531110	REPS2	Q8NFH8	660 aa		6.2	□□□□□ -1.42
CD44-231	ENST00000531110	CTCFL	Q8NI51	663 aa	Predicted RBP	6.2	□□□□□ -1.42
CD44-231	ENST00000531110	IL17D	Q8TAD2	202 aa		6.2	□□□□□ -1.42
CD44-231	ENST00000531110	NSUN6	Q8TEA1	469 aa	Known RBP	6.2	□□□□□ -1.42
CD44-231	ENST00000531110	TBC1D5	Q92609	795 aa		6.2	□□□□□ -1.42
CD44-231	ENST00000531110	TFAP2C	Q92754	450 aa		6.2	□□□□□ -1.42
CD44-231	ENST00000531110	DPF2	Q92785	391 aa		6.2	□□□□□ -1.42
CD44-231	ENST00000531110	SAAL1	Q96ER3	474 aa		6.2	□□□□□ -1.42
CD44-231	ENST00000531110	MPP4	Q96JB8	637 aa		6.2	□□□□□ -1.42
CD44-231	ENST00000531110	SH3GL1	Q99961	368 aa		6.2	□□□□□ -1.42
CD44-231	ENST00000531110	CEP72	Q9P209	647 aa		6.2	□□□□□ -1.42
CD44-231	ENST00000531110	SERPINB13	Q9UIV8	391 aa		6.2	□□□□□ -1.42
CD44-231	ENST00000531110	LRRFIP2	Q9Y608	721 aa	Known RBP	6.2	□□□□□ -1.42
CD44-231	ENST00000531110	WDR97	A6NE52	1622 aa		6.2	□□□□□ -1.42
CD44-231	ENST00000531110	CCDC171	Q6TFL3	1326 aa		6.2	□□□□□ -1.42
CD44-231	ENST00000531110	MYBBP1A	Q9BQG0	1328 aa	Known RBP	6.2	□□□□□ -1.42
CD44-231	ENST00000531110	EIF3CL	B5ME19	914 aa	Known RBP	6.19	□□□□□ -1.42
CD44-231	ENST00000531110	RECQL4	O94761	1208 aa		6.19	□□□□□ -1.42
CD44-231	ENST00000531110	KIAA0754	O94854	1291 aa		6.19	□□□□□ -1.42

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