RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 ADGRF2Q8IZF7 708 aa14.31□□□□□ -0.12
VPS28-211ENST00000530790 TOP6BLQ8N6T0 577 aa14.31□□□□□ -0.12
VPS28-211ENST00000530790 RDH13Q8NBN7 331 aa14.31□□□□□ -0.12
VPS28-211ENST00000530790 OR5B17Q8NGF7 314 aa14.31□□□□□ -0.12
VPS28-211ENST00000530790 GOLGA5Q8TBA6 731 aa14.31□□□□□ -0.12
VPS28-211ENST00000530790 SHKBP1Q8TBC3 707 aa14.31□□□□□ -0.12
VPS28-211ENST00000530790 ZSCAN18Q8TBC5 510 aaPredicted RBP14.31□□□□□ -0.12
VPS28-211ENST00000530790 SPATA18Q8TC71 538 aa14.31□□□□□ -0.12
VPS28-211ENST00000530790 SMARCD2Q92925 531 aa14.31□□□□□ -0.12
VPS28-211ENST00000530790 CHAMP1Q96JM3 812 aa14.31□□□□□ -0.12
VPS28-211ENST00000530790 LPIN3Q9BQK8 851 aa14.31□□□□□ -0.12
VPS28-211ENST00000530790 GPR88Q9GZN0 384 aa14.31□□□□□ -0.12
VPS28-211ENST00000530790 FAM86C1Q9NVL1 165 aa14.31□□□□□ -0.12
VPS28-211ENST00000530790 GDAP2Q9NXN4 497 aa14.31□□□□□ -0.12
VPS28-211ENST00000530790 DDX43Q9NXZ2 648 aaKnown RBP14.31□□□□□ -0.12
VPS28-211ENST00000530790 HPSEQ9Y251 543 aa14.31□□□□□ -0.12
VPS28-211ENST00000530790 PCDHB5Q9Y5E4 795 aa14.31□□□□□ -0.12
VPS28-211ENST00000530790 TCHHQ07283 1943 aa14.31□□□□□ -0.12
VPS28-211ENST00000530790 PRPF40AO75400 957 aaKnown RBP14.3□□□□□ -0.12
VPS28-211ENST00000530790 ATF6P18850 670 aa14.3□□□□□ -0.12
VPS28-211ENST00000530790 TNNI1P19237 187 aa14.3□□□□□ -0.12
VPS28-211ENST00000530790 SYKP43405 635 aa14.3□□□□□ -0.12
VPS28-211ENST00000530790 MRE11P49959 708 aa14.3□□□□□ -0.12
VPS28-211ENST00000530790 CDR1P51861 262 aa14.3□□□□□ -0.12
VPS28-211ENST00000530790 CYP24A1Q07973 514 aa14.3□□□□□ -0.12
VPS28-211ENST00000530790 SNW1Q13573 536 aaKnown RBP14.3□□□□□ -0.12
VPS28-211ENST00000530790 PSMD6Q15008 389 aa14.3□□□□□ -0.12
VPS28-211ENST00000530790 TAF12Q16514 161 aa14.3□□□□□ -0.12
VPS28-211ENST00000530790 INTS6LQ5JSJ4 861 aaKnown RBP14.3□□□□□ -0.12
VPS28-211ENST00000530790 POTEHQ6S545 545 aa14.3□□□□□ -0.12
VPS28-211ENST00000530790 DNAJB7Q7Z6W7 309 aaPredicted RBP14.3□□□□□ -0.12
VPS28-211ENST00000530790 LRRTM3Q86VH5 581 aa14.3□□□□□ -0.12
VPS28-211ENST00000530790 C12orf56Q8IXR9 622 aa14.3□□□□□ -0.12
VPS28-211ENST00000530790 DTWD2Q8NBA8 298 aa14.3□□□□□ -0.12
VPS28-211ENST00000530790 CCDC127Q96BQ5 260 aa14.3□□□□□ -0.12
VPS28-211ENST00000530790 HPDLQ96IR7 371 aa14.3□□□□□ -0.12
VPS28-211ENST00000530790 ZSWIM3Q96MP5 696 aa14.3□□□□□ -0.12
VPS28-211ENST00000530790 GCNAQ96QF7 691 aa14.3□□□□□ -0.12
VPS28-211ENST00000530790 CGRRF1Q99675 332 aa14.3□□□□□ -0.12
VPS28-211ENST00000530790 ACBD6Q9BR61 282 aa14.3□□□□□ -0.12
VPS28-211ENST00000530790 LRRC3Q9BY71 257 aa14.3□□□□□ -0.12
VPS28-211ENST00000530790 PLA2G2FQ9BZM2 168 aa14.3□□□□□ -0.12
VPS28-211ENST00000530790 ATXN3LQ9H3M9 355 aa14.3□□□□□ -0.12
VPS28-211ENST00000530790 SIT1Q9Y3P8 196 aa14.3□□□□□ -0.12
VPS28-211ENST00000530790 KLRC4O43908 158 aa14.29□□□□□ -0.12
VPS28-211ENST00000530790 EXOC3O60645 756 aa14.29□□□□□ -0.12
VPS28-211ENST00000530790 HAPLN1P10915 354 aaPredicted RBP14.29□□□□□ -0.12
VPS28-211ENST00000530790 ACAT1P24752 427 aaKnown RBP14.29□□□□□ -0.12
VPS28-211ENST00000530790 GABRR2P28476 465 aa14.29□□□□□ -0.12
VPS28-211ENST00000530790 PCSK1P29120 753 aa14.29□□□□□ -0.12
VPS28-211ENST00000530790 LHX1P48742 406 aa14.29□□□□□ -0.12
VPS28-211ENST00000530790 NDUFA8P51970 172 aa14.29□□□□□ -0.12
VPS28-211ENST00000530790 STARD6P59095 220 aa14.29□□□□□ -0.12
VPS28-211ENST00000530790 PSMD2Q13200 908 aa14.29□□□□□ -0.12
VPS28-211ENST00000530790 GRM2Q14416 872 aa14.29□□□□□ -0.12
VPS28-211ENST00000530790 KMT5BQ4FZB7 885 aa14.29□□□□□ -0.12
VPS28-211ENST00000530790 SLC44A4Q53GD3 710 aa14.29□□□□□ -0.12
VPS28-211ENST00000530790 ARHGAP15Q53QZ3 475 aa14.29□□□□□ -0.12
VPS28-211ENST00000530790 FSIP1Q8NA03 581 aa14.29□□□□□ -0.12
VPS28-211ENST00000530790 KIAA0895Q8NCT3 520 aa14.29□□□□□ -0.12
VPS28-211ENST00000530790 PJA1Q8NG27 643 aa14.29□□□□□ -0.12
VPS28-211ENST00000530790 DEPDC1BQ8WUY9 529 aa14.29□□□□□ -0.12
VPS28-211ENST00000530790 DNASE1L2Q92874 299 aa14.29□□□□□ -0.12
VPS28-211ENST00000530790 CCDC47Q96A33 483 aaKnown RBP14.29□□□□□ -0.12
VPS28-211ENST00000530790 PHOX2BQ99453 314 aa14.29□□□□□ -0.12
VPS28-211ENST00000530790 TRMT61BQ9BVS5 477 aaKnown RBP14.29□□□□□ -0.12
VPS28-211ENST00000530790 FOXQ1Q9C009 403 aa14.29□□□□□ -0.12
VPS28-211ENST00000530790 BRD9Q9H8M2 597 aa14.29□□□□□ -0.12
VPS28-211ENST00000530790 TRPV4Q9HBA0 871 aa14.29□□□□□ -0.12
VPS28-211ENST00000530790 ZNF334Q9HCZ1 680 aaPredicted RBP14.29□□□□□ -0.12
VPS28-211ENST00000530790 FAM237AA0A1B0GTK4 181 aa14.28□□□□□ -0.12
VPS28-211ENST00000530790 A0A1W2PQ27 194 aa14.28□□□□□ -0.12
VPS28-211ENST00000530790 A0A1W2PQ64 194 aa14.28□□□□□ -0.12
VPS28-211ENST00000530790 A0A1W2PQD8 194 aa14.28□□□□□ -0.12
VPS28-211ENST00000530790 KANSL1LA0AUZ9 987 aa14.28□□□□□ -0.12
VPS28-211ENST00000530790 DCNP07585 359 aaKnown RBP14.28□□□□□ -0.12
VPS28-211ENST00000530790 PSMC3P17980 439 aa14.28□□□□□ -0.12
VPS28-211ENST00000530790 CDC25CP30307 473 aa14.28□□□□□ -0.12
VPS28-211ENST00000530790 VIPR2P41587 438 aa14.28□□□□□ -0.12
VPS28-211ENST00000530790 STK4Q13043 487 aa14.28□□□□□ -0.12
VPS28-211ENST00000530790 UBXN2BQ14CS0 331 aa14.28□□□□□ -0.12
VPS28-211ENST00000530790 SOWAHAQ2M3V2 549 aa14.28□□□□□ -0.12
VPS28-211ENST00000530790 STXBP5Q5T5C0 1151 aa14.28□□□□□ -0.12
VPS28-211ENST00000530790 GPR158Q5T848 1215 aa14.28□□□□□ -0.12
VPS28-211ENST00000530790 SCARA3Q6AZY7 606 aa14.28□□□□□ -0.12
VPS28-211ENST00000530790 VITQ6UXI7 678 aa14.28□□□□□ -0.12
VPS28-211ENST00000530790 TPRG1Q6ZUI0 275 aa14.28□□□□□ -0.12
VPS28-211ENST00000530790 GAREM2Q75VX8 874 aa14.28□□□□□ -0.12
VPS28-211ENST00000530790 DPH6Q7L8W6 267 aa14.28□□□□□ -0.12
VPS28-211ENST00000530790 TRAPPC11Q7Z392 1133 aa14.28□□□□□ -0.12
VPS28-211ENST00000530790 OSTM1Q86WC4 334 aa14.28□□□□□ -0.12
VPS28-211ENST00000530790 GIPC2Q8TF65 315 aa14.28□□□□□ -0.12
VPS28-211ENST00000530790 E2F7Q96AV8 911 aa14.28□□□□□ -0.12
VPS28-211ENST00000530790 MMS19Q96T76 1030 aa14.28□□□□□ -0.12
VPS28-211ENST00000530790 PI4K2AQ9BTU6 479 aa14.28□□□□□ -0.12
VPS28-211ENST00000530790 ABCB6Q9NP58 842 aa14.28□□□□□ -0.12
VPS28-211ENST00000530790 TMLHEQ9NVH6 421 aa14.28□□□□□ -0.12
VPS28-211ENST00000530790 PIEZO1Q92508 2521 aa14.28□□□□□ -0.12
VPS28-211ENST00000530790 GABRDO14764 452 aa14.27□□□□□ -0.13
VPS28-211ENST00000530790 RPN1P04843 607 aaKnown RBP14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms