RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 C2orf15Q8WU43 125 aaKnown RBP22.18■■□□□ 1.14
CD44-222ENST00000526025 SDCBP2Q9H190 292 aa22.18■■□□□ 1.14
CD44-222ENST00000526025 REV3LO60673 3130 aa22.18■■□□□ 1.14
CD44-222ENST00000526025 LGALS16A8MUM7 142 aa22.17■■□□□ 1.14
CD44-222ENST00000526025 GOLGA6L19H0YKK7 550 aa22.17■■□□□ 1.14
CD44-222ENST00000526025 ATP1A3P13637 1013 aa22.17■■□□□ 1.14
CD44-222ENST00000526025 CPB1P15086 417 aa22.17■■□□□ 1.14
CD44-222ENST00000526025 ATF2P15336 505 aa22.17■■□□□ 1.14
CD44-222ENST00000526025 YWHAEP62258 255 aaKnown RBP22.17■■□□□ 1.14
CD44-222ENST00000526025 CUL2Q13617 745 aa22.17■■□□□ 1.14
CD44-222ENST00000526025 NFE2Q16621 373 aaPredicted RBP22.17■■□□□ 1.14
CD44-222ENST00000526025 SCARA5Q6ZMJ2 495 aa22.17■■□□□ 1.14
CD44-222ENST00000526025 TATDN2Q93075 761 aa22.17■■□□□ 1.14
CD44-222ENST00000526025 JAKMIP2Q96AA8 810 aa22.17■■□□□ 1.14
CD44-222ENST00000526025 PKMYT1Q99640 499 aa22.17■■□□□ 1.14
CD44-222ENST00000526025 DNAI2Q9GZS0 605 aa22.17■■□□□ 1.14
CD44-222ENST00000526025 IGFLR1Q9H665 355 aa22.17■■□□□ 1.14
CD44-222ENST00000526025 BARX2Q9UMQ3 279 aaPredicted RBP22.17■■□□□ 1.14
CD44-222ENST00000526025 COG5Q9UP83 839 aa22.17■■□□□ 1.14
CD44-222ENST00000526025 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP22.16■■□□□ 1.14
CD44-222ENST00000526025 EPCAMP16422 314 aa22.16■■□□□ 1.14
CD44-222ENST00000526025 HOXB8P17481 243 aaPredicted RBP22.16■■□□□ 1.14
CD44-222ENST00000526025 PON1P27169 355 aa22.16■■□□□ 1.14
CD44-222ENST00000526025 MAPRE1Q15691 268 aaKnown RBP22.16■■□□□ 1.14
CD44-222ENST00000526025 CCDC85BQ15834 202 aaPredicted RBP22.16■■□□□ 1.14
CD44-222ENST00000526025 UVSSAQ2YD98 709 aa22.16■■□□□ 1.14
CD44-222ENST00000526025 FKBP15Q5T1M5 1219 aa22.16■■□□□ 1.14
CD44-222ENST00000526025 FAM171BQ6P995 826 aa22.16■■□□□ 1.14
CD44-222ENST00000526025 ENOSF1Q7L5Y1 443 aa22.16■■□□□ 1.14
CD44-222ENST00000526025 PALB2Q86YC2 1186 aa22.16■■□□□ 1.14
CD44-222ENST00000526025 GLYCTKQ8IVS8 523 aa22.16■■□□□ 1.14
CD44-222ENST00000526025 TCEAL8Q8IYN2 117 aa22.16■■□□□ 1.14
CD44-222ENST00000526025 OR6B3Q8NGW1 331 aa22.16■■□□□ 1.14
CD44-222ENST00000526025 TNIP3Q96KP6 325 aa22.16■■□□□ 1.14
CD44-222ENST00000526025 RHOBTB2Q9BYZ6 727 aa22.16■■□□□ 1.14
CD44-222ENST00000526025 VPS16Q9H269 839 aa22.16■■□□□ 1.14
CD44-222ENST00000526025 A8MXQ7 604 aa22.15■■□□□ 1.14
CD44-222ENST00000526025 LINC01565O15544 149 aa22.15■■□□□ 1.14
CD44-222ENST00000526025 CILPO75339 1184 aa22.15■■□□□ 1.14
CD44-222ENST00000526025 POU2F2P09086 479 aa22.15■■□□□ 1.14
CD44-222ENST00000526025 WEE2P0C1S8 567 aa22.15■■□□□ 1.14
CD44-222ENST00000526025 LMO2P25791 158 aa22.15■■□□□ 1.14
CD44-222ENST00000526025 RAP1GAPP47736 663 aa22.15■■□□□ 1.14
CD44-222ENST00000526025 CDH8P55286 799 aa22.15■■□□□ 1.14
CD44-222ENST00000526025 CCDC149Q6ZUS6 474 aa22.15■■□□□ 1.14
CD44-222ENST00000526025 UBR7Q8N806 425 aa22.15■■□□□ 1.14
CD44-222ENST00000526025 KREMEN2Q8NCW0 462 aa22.15■■□□□ 1.14
CD44-222ENST00000526025 CMASQ8NFW8 434 aaPredicted RBP22.15■■□□□ 1.14
CD44-222ENST00000526025 ELMO3Q96BJ8 720 aa22.15■■□□□ 1.14
CD44-222ENST00000526025 SYT15Q9BQS2 421 aa22.15■■□□□ 1.14
CD44-222ENST00000526025 CRACR2AQ9BSW2 395 aa22.15■■□□□ 1.14
CD44-222ENST00000526025 ABCB6Q9NP58 842 aa22.15■■□□□ 1.14
CD44-222ENST00000526025 UTP3Q9NQZ2 479 aaKnown RBP eCLIP22.15■■□□□ 1.14
CD44-222ENST00000526025 MAN1C1Q9NR34 630 aa22.15■■□□□ 1.14
CD44-222ENST00000526025 CLDND1Q9NY35 253 aa22.15■■□□□ 1.14
CD44-222ENST00000526025 APEX2Q9UBZ4 518 aa22.15■■□□□ 1.14
CD44-222ENST00000526025 DAAM1Q9Y4D1 1078 aa22.15■■□□□ 1.14
CD44-222ENST00000526025 NME7Q9Y5B8 376 aa22.15■■□□□ 1.14
CD44-222ENST00000526025 PES1O00541 588 aaKnown RBP22.14■■□□□ 1.13
CD44-222ENST00000526025 TBX10O75333 385 aa22.14■■□□□ 1.13
CD44-222ENST00000526025 TRIM21P19474 475 aaKnown RBP22.14■■□□□ 1.13
CD44-222ENST00000526025 RFX1P22670 979 aa22.14■■□□□ 1.13
CD44-222ENST00000526025 HOXA9P31269 272 aa22.14■■□□□ 1.13
CD44-222ENST00000526025 LTBRP36941 435 aa22.14■■□□□ 1.13
CD44-222ENST00000526025 ARPP19P56211 112 aa22.14■■□□□ 1.13
CD44-222ENST00000526025 ANKRD54Q6NXT1 300 aa22.14■■□□□ 1.13
CD44-222ENST00000526025 LRRTM3Q86VH5 581 aa22.14■■□□□ 1.13
CD44-222ENST00000526025 CRYBG2Q8N1P7 616 aa22.14■■□□□ 1.13
CD44-222ENST00000526025 PPM1KQ8N3J5 372 aa22.14■■□□□ 1.13
CD44-222ENST00000526025 B3GALNT2Q8NCR0 500 aa22.14■■□□□ 1.13
CD44-222ENST00000526025 SPPL2BQ8TCT7 592 aa22.14■■□□□ 1.13
CD44-222ENST00000526025 HLA-CQ95604 372 aa22.14■■□□□ 1.13
CD44-222ENST00000526025 FUBP3Q96I24 572 aaKnown RBP eCLIP22.14■■□□□ 1.13
CD44-222ENST00000526025 TMEM209Q96SK2 561 aa22.14■■□□□ 1.13
CD44-222ENST00000526025 UBE2ZQ9H832 354 aaPredicted RBP22.14■■□□□ 1.13
CD44-222ENST00000526025 SFXN1Q9H9B4 322 aa22.14■■□□□ 1.13
CD44-222ENST00000526025 CISHQ9NSE2 258 aa22.14■■□□□ 1.13
CD44-222ENST00000526025 ZDHHC7Q9NXF8 308 aa22.14■■□□□ 1.13
CD44-222ENST00000526025 CLEC1BQ9P126 229 aa22.14■■□□□ 1.13
CD44-222ENST00000526025 MTMR11A4FU01 709 aa22.13■■□□□ 1.13
CD44-222ENST00000526025 HNRNPA1P09651 372 aaKnown RBP eCLIP22.13■■□□□ 1.13
CD44-222ENST00000526025 OR4Q2P0C623 313 aa22.13■■□□□ 1.13
CD44-222ENST00000526025 SLC9A1P19634 815 aa22.13■■□□□ 1.13
CD44-222ENST00000526025 ACAT1P24752 427 aaKnown RBP22.13■■□□□ 1.13
CD44-222ENST00000526025 LRMPQ12912 555 aa22.13■■□□□ 1.13
CD44-222ENST00000526025 SKIV2LQ15477 1246 aaKnown RBP22.13■■□□□ 1.13
CD44-222ENST00000526025 CFAP221Q4G0U5 840 aa22.13■■□□□ 1.13
CD44-222ENST00000526025 FILIP1LQ4L180 1135 aa22.13■■□□□ 1.13
CD44-222ENST00000526025 SLC39A12Q504Y0 691 aa22.13■■□□□ 1.13
CD44-222ENST00000526025 LIN9Q5TKA1 542 aa22.13■■□□□ 1.13
CD44-222ENST00000526025 PHLDB3Q6NSJ2 640 aa22.13■■□□□ 1.13
CD44-222ENST00000526025 LLGL2Q6P1M3 1020 aa22.13■■□□□ 1.13
CD44-222ENST00000526025 CYP26C1Q6V0L0 522 aa22.13■■□□□ 1.13
CD44-222ENST00000526025 RNF19BQ6ZMZ0 732 aa22.13■■□□□ 1.13
CD44-222ENST00000526025 MYCBPAPQ8TBZ2 947 aa22.13■■□□□ 1.13
CD44-222ENST00000526025 MSLNLQ96KJ4 702 aa22.13■■□□□ 1.13
CD44-222ENST00000526025 ERGIC2Q96RQ1 377 aa22.13■■□□□ 1.13
CD44-222ENST00000526025 ARID3AQ99856 593 aa22.13■■□□□ 1.13
CD44-222ENST00000526025 NT5C1AQ9BXI3 368 aa22.13■■□□□ 1.13
CD44-222ENST00000526025 PLCB1Q9NQ66 1216 aa22.13■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms