RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 TSPAN18Q96SJ8 248 aa5.54□□□□□ -1.52
CD44-220ENST00000525688 A1CFQ9NQ94 594 aaKnown RBP5.54□□□□□ -1.52
CD44-220ENST00000525688 PLA2G3Q9NZ20 509 aa5.54□□□□□ -1.52
CD44-220ENST00000525688 NAP1L2Q9ULW6 460 aaPredicted RBP5.54□□□□□ -1.52
CD44-220ENST00000525688 HDAC5Q9UQL6 1122 aa5.54□□□□□ -1.52
CD44-220ENST00000525688 SLC30A1Q9Y6M5 507 aa5.54□□□□□ -1.52
CD44-220ENST00000525688 CEP162Q5TB80 1403 aa5.54□□□□□ -1.52
CD44-220ENST00000525688 CASKIN1Q8WXD9 1431 aa5.54□□□□□ -1.52
CD44-220ENST00000525688 HECW1Q76N89 1606 aa5.53□□□□□ -1.52
CD44-220ENST00000525688 MBD3L4A6NDZ8 208 aaPredicted RBP5.53□□□□□ -1.52
CD44-220ENST00000525688 MBD3L3A6NE82 208 aaPredicted RBP5.53□□□□□ -1.52
CD44-220ENST00000525688 ZNF785A8K8V0 405 aa5.53□□□□□ -1.52
CD44-220ENST00000525688 ADAMTS3O15072 1205 aa5.53□□□□□ -1.52
CD44-220ENST00000525688 LAMTOR5O43504 91 aa5.53□□□□□ -1.52
CD44-220ENST00000525688 IPO13O94829 963 aaKnown RBP5.53□□□□□ -1.52
CD44-220ENST00000525688 MT-ND5P03915 603 aa5.53□□□□□ -1.52
CD44-220ENST00000525688 ANXA2P07355 339 aaKnown RBP5.53□□□□□ -1.52
CD44-220ENST00000525688 FGFR2P21802 821 aa5.53□□□□□ -1.52
CD44-220ENST00000525688 MGAT1P26572 445 aa5.53□□□□□ -1.52
CD44-220ENST00000525688 SLC11A2P49281 568 aa5.53□□□□□ -1.52
CD44-220ENST00000525688 PPM1FP49593 454 aaPredicted RBP5.53□□□□□ -1.52
CD44-220ENST00000525688 GEMIN4P57678 1058 aaKnown RBP5.53□□□□□ -1.52
CD44-220ENST00000525688 RAP2BP61225 183 aa5.53□□□□□ -1.52
CD44-220ENST00000525688 PMS2P11Q13670 270 aa5.53□□□□□ -1.52
CD44-220ENST00000525688 SLC4A8Q2Y0W8 1093 aa5.53□□□□□ -1.52
CD44-220ENST00000525688 ARL13BQ3SXY8 428 aa5.53□□□□□ -1.52
CD44-220ENST00000525688 HYIQ5T013 277 aa5.53□□□□□ -1.52
CD44-220ENST00000525688 C1QTNF12Q5T7M4 302 aa5.53□□□□□ -1.52
CD44-220ENST00000525688 ANO1Q5XXA6 986 aa5.53□□□□□ -1.52
CD44-220ENST00000525688 EFCAB12Q6NXP0 572 aa5.53□□□□□ -1.52
CD44-220ENST00000525688 CASC1Q6TDU7 716 aa5.53□□□□□ -1.52
CD44-220ENST00000525688 LIX1LQ8IVB5 337 aa5.53□□□□□ -1.52
CD44-220ENST00000525688 NKAPQ8N5F7 415 aaKnown RBP5.53□□□□□ -1.52
CD44-220ENST00000525688 PPHLN1Q8NEY8 458 aaKnown RBP5.53□□□□□ -1.52
CD44-220ENST00000525688 ST8SIA2Q92186 375 aa5.53□□□□□ -1.52
CD44-220ENST00000525688 SNX22Q96L94 193 aa5.53□□□□□ -1.52
CD44-220ENST00000525688 TTC14Q96N46 770 aa5.53□□□□□ -1.52
CD44-220ENST00000525688 LRRC37BQ96QE4 947 aa5.53□□□□□ -1.52
CD44-220ENST00000525688 CPPED1Q9BRF8 314 aaPredicted RBP5.53□□□□□ -1.52
CD44-220ENST00000525688 SIK2Q9H0K1 926 aa5.53□□□□□ -1.52
CD44-220ENST00000525688 FBXO2Q9UK22 296 aaPredicted RBP5.53□□□□□ -1.52
CD44-220ENST00000525688 SLC45A2Q9UMX9 530 aa5.53□□□□□ -1.52
CD44-220ENST00000525688 CD109Q6YHK3 1445 aa5.53□□□□□ -1.52
CD44-220ENST00000525688 CDK13Q14004 1512 aaKnown RBP5.53□□□□□ -1.52
CD44-220ENST00000525688 MAGI3Q5TCQ9 1506 aa5.53□□□□□ -1.52
CD44-220ENST00000525688 ABCA9Q8IUA7 1624 aa5.52□□□□□ -1.53
CD44-220ENST00000525688 TEX14Q8IWB6 1497 aa5.52□□□□□ -1.53
CD44-220ENST00000525688 TSPOAP1O95153 1857 aa5.52□□□□□ -1.53
CD44-220ENST00000525688 PCF11O94913 1555 aaKnown RBP5.52□□□□□ -1.53
CD44-220ENST00000525688 A0A087WV62 115 aa5.52□□□□□ -1.53
CD44-220ENST00000525688 CDHR4A6H8M9 788 aa5.52□□□□□ -1.53
CD44-220ENST00000525688 CLCA1A8K7I4 914 aa5.52□□□□□ -1.53
CD44-220ENST00000525688 PYCARD-AS1I3L0S3 204 aa5.52□□□□□ -1.53
CD44-220ENST00000525688 AREL1O15033 823 aa5.52□□□□□ -1.53
CD44-220ENST00000525688 PLA2G6O60733 806 aa5.52□□□□□ -1.53
CD44-220ENST00000525688 MFAP3LO75121 409 aa5.52□□□□□ -1.53
CD44-220ENST00000525688 RAD17O75943 681 aa5.52□□□□□ -1.53
CD44-220ENST00000525688 AGFG2O95081 481 aa5.52□□□□□ -1.53
CD44-220ENST00000525688 UNC5CO95185 931 aa5.52□□□□□ -1.53
CD44-220ENST00000525688 PIM1P11309 404 aaPredicted RBP5.52□□□□□ -1.53
CD44-220ENST00000525688 RRM1P23921 792 aa5.52□□□□□ -1.53
CD44-220ENST00000525688 HALP42357 657 aa5.52□□□□□ -1.53
CD44-220ENST00000525688 TECP42680 631 aa5.52□□□□□ -1.53
CD44-220ENST00000525688 HSPA7P48741 367 aa5.52□□□□□ -1.53
CD44-220ENST00000525688 ZNF135P52742 658 aaPredicted RBP5.52□□□□□ -1.53
CD44-220ENST00000525688 PSMC1P62191 440 aaKnown RBP5.52□□□□□ -1.53
CD44-220ENST00000525688 MPEG1Q2M385 716 aa5.52□□□□□ -1.53
CD44-220ENST00000525688 SLC35G1Q2M3R5 365 aa5.52□□□□□ -1.53
CD44-220ENST00000525688 ALDH1L2Q3SY69 923 aa5.52□□□□□ -1.53
CD44-220ENST00000525688 AMOTQ4VCS5 1084 aa5.52□□□□□ -1.53
CD44-220ENST00000525688 PRR16Q569H4 304 aa5.52□□□□□ -1.53
CD44-220ENST00000525688 DCAF17Q5H9S7 520 aaPredicted RBP5.52□□□□□ -1.53
CD44-220ENST00000525688 KLHDC7AQ5VTJ3 777 aa5.52□□□□□ -1.53
CD44-220ENST00000525688 CATSPERGQ6ZRH7 1159 aa5.52□□□□□ -1.53
CD44-220ENST00000525688 BEND5Q7L4P6 421 aa5.52□□□□□ -1.53
CD44-220ENST00000525688 PPP1R32Q7Z5V6 425 aa5.52□□□□□ -1.53
CD44-220ENST00000525688 USP37Q86T82 979 aa5.52□□□□□ -1.53
CD44-220ENST00000525688 ZFPM1Q8IX07 1006 aa5.52□□□□□ -1.53
CD44-220ENST00000525688 NUP133Q8WUM0 1156 aa5.52□□□□□ -1.53
CD44-220ENST00000525688 IQCDQ96DY2 449 aa5.52□□□□□ -1.53
CD44-220ENST00000525688 TMEM176AQ96HP8 235 aa5.52□□□□□ -1.53
CD44-220ENST00000525688 KLHL32Q96NJ5 620 aa5.52□□□□□ -1.53
CD44-220ENST00000525688 TTLL2Q9BWV7 592 aa5.52□□□□□ -1.53
CD44-220ENST00000525688 EIF2AQ9BY44 585 aaKnown RBP5.52□□□□□ -1.53
CD44-220ENST00000525688 CPEB1Q9BZB8 566 aaKnown RBP5.52□□□□□ -1.53
CD44-220ENST00000525688 TINAGL1Q9GZM7 467 aaPredicted RBP5.52□□□□□ -1.53
CD44-220ENST00000525688 USP40Q9NVE5 1235 aa5.52□□□□□ -1.53
CD44-220ENST00000525688 CDC23Q9UJX2 597 aa5.52□□□□□ -1.53
CD44-220ENST00000525688 SH3BP1Q9Y3L3 701 aa5.52□□□□□ -1.53
CD44-220ENST00000525688 RABGAP1Q9Y3P9 1069 aa5.52□□□□□ -1.53
CD44-220ENST00000525688 PCDHGB2Q9Y5G2 931 aa5.52□□□□□ -1.53
CD44-220ENST00000525688 CFAP43Q8NDM7 1665 aa5.52□□□□□ -1.53
CD44-220ENST00000525688 FYCO1Q9BQS8 1478 aa5.51□□□□□ -1.53
CD44-220ENST00000525688 DRGXA6NNA5 263 aa5.51□□□□□ -1.53
CD44-220ENST00000525688 E9PLN8 166 aa5.51□□□□□ -1.53
CD44-220ENST00000525688 THAP12O43422 761 aa5.51□□□□□ -1.53
CD44-220ENST00000525688 PIP5K1CO60331 668 aa5.51□□□□□ -1.53
CD44-220ENST00000525688 TRIM13O60858 407 aa5.51□□□□□ -1.53
CD44-220ENST00000525688 GRPP07492 148 aa5.51□□□□□ -1.53
CD44-220ENST00000525688 HARSP12081 509 aaKnown RBP5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms