RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 SRRDQ9UH36 339 aa5.43□□□□□ -1.54
CD44-215ENST00000525241 PCDHGB6Q9Y5F9 930 aa5.43□□□□□ -1.54
CD44-215ENST00000525241 SPATA31A3Q5VYP0 1347 aa5.43□□□□□ -1.54
CD44-215ENST00000525241 TRGV11A0A075B6L2 103 aa5.42□□□□□ -1.54
CD44-215ENST00000525241 A0A087WWL8 130 aa5.42□□□□□ -1.54
CD44-215ENST00000525241 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa5.42□□□□□ -1.54
CD44-215ENST00000525241 ISM1B1AKI9 464 aa5.42□□□□□ -1.54
CD44-215ENST00000525241 PRC1O43663 620 aa5.42□□□□□ -1.54
CD44-215ENST00000525241 ITGAMP11215 1152 aa5.42□□□□□ -1.54
CD44-215ENST00000525241 TRIM27P14373 513 aa5.42□□□□□ -1.54
CD44-215ENST00000525241 KRT4P19013 534 aa5.42□□□□□ -1.54
CD44-215ENST00000525241 CTBP1Q13363 440 aa5.42□□□□□ -1.54
CD44-215ENST00000525241 CNGA2Q16280 664 aa5.42□□□□□ -1.54
CD44-215ENST00000525241 AMOTQ4VCS5 1084 aa5.42□□□□□ -1.54
CD44-215ENST00000525241 MICALCLQ6ZW33 695 aa5.42□□□□□ -1.54
CD44-215ENST00000525241 NEU4Q8WWR8 484 aaPredicted RBP5.42□□□□□ -1.54
CD44-215ENST00000525241 SNX19Q92543 992 aa5.42□□□□□ -1.54
CD44-215ENST00000525241 SUCLG2Q96I99 432 aa5.42□□□□□ -1.54
CD44-215ENST00000525241 SLC46A1Q96NT5 459 aa5.42□□□□□ -1.54
CD44-215ENST00000525241 SCAND2PQ9GZW5 306 aaPredicted RBP5.42□□□□□ -1.54
CD44-215ENST00000525241 SYBUQ9NX95 663 aa5.42□□□□□ -1.54
CD44-215ENST00000525241 XPR1Q9UBH6 696 aa5.42□□□□□ -1.54
CD44-215ENST00000525241 RAD54BQ9Y620 910 aa5.42□□□□□ -1.54
CD44-215ENST00000525241 COL4A3Q01955 1670 aa5.42□□□□□ -1.54
CD44-215ENST00000525241 GRID2IPA4D2P6 1211 aa5.41□□□□□ -1.54
CD44-215ENST00000525241 TBC1D4O60343 1298 aa5.41□□□□□ -1.54
CD44-215ENST00000525241 MGEA5O60502 916 aa5.41□□□□□ -1.54
CD44-215ENST00000525241 CAND2O75155 1236 aa5.41□□□□□ -1.54
CD44-215ENST00000525241 SOAT2O75908 522 aa5.41□□□□□ -1.54
CD44-215ENST00000525241 FSHBP01225 129 aa5.41□□□□□ -1.54
CD44-215ENST00000525241 VIPR2P41587 438 aa5.41□□□□□ -1.54
CD44-215ENST00000525241 NPTX2P47972 431 aa5.41□□□□□ -1.54
CD44-215ENST00000525241 GCLCP48506 637 aaPredicted RBP5.41□□□□□ -1.54
CD44-215ENST00000525241 ZNF134P52741 427 aa5.41□□□□□ -1.54
CD44-215ENST00000525241 PURAQ00577 322 aaKnown RBP5.41□□□□□ -1.54
CD44-215ENST00000525241 FMO1Q01740 532 aa5.41□□□□□ -1.54
CD44-215ENST00000525241 SLC13A2Q13183 592 aa5.41□□□□□ -1.54
CD44-215ENST00000525241 LONRF3Q496Y0 759 aa5.41□□□□□ -1.54
CD44-215ENST00000525241 PREPLQ4J6C6 727 aaPredicted RBP5.41□□□□□ -1.54
CD44-215ENST00000525241 COBLL1Q53SF7 1204 aa5.41□□□□□ -1.54
CD44-215ENST00000525241 LMBRD2Q68DH5 695 aaPredicted RBP5.41□□□□□ -1.54
CD44-215ENST00000525241 Q6YL49 198 aa5.41□□□□□ -1.54
CD44-215ENST00000525241 FAM9AQ8IZU1 332 aaPredicted RBP5.41□□□□□ -1.54
CD44-215ENST00000525241 LNX2Q8N448 690 aa5.41□□□□□ -1.54
CD44-215ENST00000525241 SLC15A4Q8N697 577 aa5.41□□□□□ -1.54
CD44-215ENST00000525241 DNAJC5GQ8N7S2 189 aa5.41□□□□□ -1.54
CD44-215ENST00000525241 SSH3Q8TE77 659 aa5.41□□□□□ -1.54
CD44-215ENST00000525241 PTCD3Q96EY7 689 aaKnown RBP5.41□□□□□ -1.54
CD44-215ENST00000525241 APOL5Q9BWW9 433 aa5.41□□□□□ -1.54
CD44-215ENST00000525241 LRRC27Q9C0I9 530 aa5.41□□□□□ -1.54
CD44-215ENST00000525241 TBCCD1Q9NVR7 557 aa5.41□□□□□ -1.54
CD44-215ENST00000525241 TESQ9UGI8 421 aaKnown RBP5.41□□□□□ -1.54
CD44-215ENST00000525241 TMX2Q9Y320 296 aa5.41□□□□□ -1.54
CD44-215ENST00000525241 APAF1O14727 1248 aa5.4□□□□□ -1.54
CD44-215ENST00000525241 SRGNP10124 158 aa5.4□□□□□ -1.54
CD44-215ENST00000525241 BRAFP15056 766 aa5.4□□□□□ -1.54
CD44-215ENST00000525241 TGM1P22735 817 aa5.4□□□□□ -1.54
CD44-215ENST00000525241 GDF5P43026 501 aa5.4□□□□□ -1.54
CD44-215ENST00000525241 NDUFV1P49821 464 aa5.4□□□□□ -1.54
CD44-215ENST00000525241 BLOC1S1P78537 153 aa5.4□□□□□ -1.54
CD44-215ENST00000525241 TAP1Q03518 808 aa5.4□□□□□ -1.54
CD44-215ENST00000525241 KLF10Q13118 480 aa5.4□□□□□ -1.54
CD44-215ENST00000525241 IQCB1Q15051 598 aa5.4□□□□□ -1.54
CD44-215ENST00000525241 SF3B3Q15393 1217 aaKnown RBP5.4□□□□□ -1.54
CD44-215ENST00000525241 USP51Q70EK9 711 aa5.4□□□□□ -1.54
CD44-215ENST00000525241 MICU3Q86XE3 530 aa5.4□□□□□ -1.54
CD44-215ENST00000525241 KRT78Q8N1N4 520 aa5.4□□□□□ -1.54
CD44-215ENST00000525241 LCORLQ8N3X6 602 aa5.4□□□□□ -1.54
CD44-215ENST00000525241 AMER2Q8N7J2 671 aa5.4□□□□□ -1.54
CD44-215ENST00000525241 SLC16A11Q8NCK7 471 aa5.4□□□□□ -1.54
CD44-215ENST00000525241 PJA1Q8NG27 643 aa5.4□□□□□ -1.54
CD44-215ENST00000525241 SLC30A5Q8TAD4 765 aa5.4□□□□□ -1.54
CD44-215ENST00000525241 LINC00476Q8WZB0 136 aa5.4□□□□□ -1.54
CD44-215ENST00000525241 NMD3Q96D46 503 aaKnown RBP5.4□□□□□ -1.54
CD44-215ENST00000525241 Q96MF0 132 aa5.4□□□□□ -1.54
CD44-215ENST00000525241 ZNF518BQ9C0D4 1074 aa5.4□□□□□ -1.54
CD44-215ENST00000525241 TTYH3Q9C0H2 523 aa5.4□□□□□ -1.54
CD44-215ENST00000525241 ARNT2Q9HBZ2 717 aa5.4□□□□□ -1.54
CD44-215ENST00000525241 KIAA1586Q9HCI6 787 aa5.4□□□□□ -1.54
CD44-215ENST00000525241 SACM1LQ9NTJ5 587 aa5.4□□□□□ -1.54
CD44-215ENST00000525241 ING1Q9UK53 422 aaPredicted RBP5.4□□□□□ -1.54
CD44-215ENST00000525241 FAM50BQ9Y247 325 aa5.4□□□□□ -1.54
CD44-215ENST00000525241 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.4□□□□□ -1.54
CD44-215ENST00000525241 A0A0B4J269 797 aa5.39□□□□□ -1.55
CD44-215ENST00000525241 TRIM43BA6NCK2 446 aa5.39□□□□□ -1.55
CD44-215ENST00000525241 TMEM233B4DJY2 109 aa5.39□□□□□ -1.55
CD44-215ENST00000525241 F5H697 171 aa5.39□□□□□ -1.55
CD44-215ENST00000525241 MYO1CO00159 1063 aa5.39□□□□□ -1.55
CD44-215ENST00000525241 PQBP1O60828 265 aaKnown RBP5.39□□□□□ -1.55
CD44-215ENST00000525241 MAP4K4O95819 1239 aaPredicted RBP5.39□□□□□ -1.55
CD44-215ENST00000525241 ATXN1LP0C7T5 689 aaKnown RBP5.39□□□□□ -1.55
CD44-215ENST00000525241 SLC5A1P13866 664 aa5.39□□□□□ -1.55
CD44-215ENST00000525241 ITGALP20701 1170 aa5.39□□□□□ -1.55
CD44-215ENST00000525241 HNRNPMP52272 730 aaKnown RBP eCLIP5.39□□□□□ -1.55
CD44-215ENST00000525241 TUBB3Q13509 450 aa5.39□□□□□ -1.55
CD44-215ENST00000525241 SAFBQ15424 915 aaKnown RBP eCLIP5.39□□□□□ -1.55
CD44-215ENST00000525241 C3orf38Q5JPI3 329 aa5.39□□□□□ -1.55
CD44-215ENST00000525241 TMEM108Q6UXF1 575 aa5.39□□□□□ -1.55
CD44-215ENST00000525241 KSR2Q6VAB6 950 aa5.39□□□□□ -1.55
CD44-215ENST00000525241 SESTD1Q86VW0 696 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms