RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 SCN9AQ15858 1988 aa10.71□□□□□ -0.69
MCF2-209ENST00000520602 CELF2O95319 508 aaKnown RBP10.71□□□□□ -0.69
MCF2-209ENST00000520602 ZBED1O96006 694 aa10.71□□□□□ -0.69
MCF2-209ENST00000520602 SHBGP04278 402 aa10.71□□□□□ -0.69
MCF2-209ENST00000520602 LCP1P13796 627 aa10.71□□□□□ -0.69
MCF2-209ENST00000520602 SLC26A2P50443 739 aa10.71□□□□□ -0.69
MCF2-209ENST00000520602 TAP1Q03518 808 aa10.71□□□□□ -0.69
MCF2-209ENST00000520602 ZNF484Q5JVG2 852 aa10.71□□□□□ -0.69
MCF2-209ENST00000520602 MFSD7Q6UXD7 560 aa10.71□□□□□ -0.69
MCF2-209ENST00000520602 PRMT1Q99873 361 aaKnown RBP10.71□□□□□ -0.69
MCF2-209ENST00000520602 DDX23Q9BUQ8 820 aaKnown RBP10.71□□□□□ -0.69
MCF2-209ENST00000520602 NT5C1AQ9BXI3 368 aa10.71□□□□□ -0.69
MCF2-209ENST00000520602 CDC42EP4Q9H3Q1 356 aaKnown RBP10.71□□□□□ -0.69
MCF2-209ENST00000520602 RNPEPQ9H4A4 650 aa10.71□□□□□ -0.69
MCF2-209ENST00000520602 LRRC4Q9HBW1 653 aa10.71□□□□□ -0.69
MCF2-209ENST00000520602 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.71□□□□□ -0.69
MCF2-209ENST00000520602 STXBP5LQ9Y2K9 1186 aa10.71□□□□□ -0.69
MCF2-209ENST00000520602 A0A087WUV0 522 aaPredicted RBP10.71□□□□□ -0.7
MCF2-209ENST00000520602 SPAG7O75391 227 aa10.71□□□□□ -0.7
MCF2-209ENST00000520602 ARIH2O95376 493 aa10.71□□□□□ -0.7
MCF2-209ENST00000520602 LGALS2P05162 132 aa10.71□□□□□ -0.7
MCF2-209ENST00000520602 NFICP08651 508 aa10.71□□□□□ -0.7
MCF2-209ENST00000520602 EIF3EP60228 445 aaKnown RBP10.71□□□□□ -0.7
MCF2-209ENST00000520602 NOMO3P69849 1222 aa10.71□□□□□ -0.7
MCF2-209ENST00000520602 C1QBPQ07021 282 aaKnown RBP10.71□□□□□ -0.7
MCF2-209ENST00000520602 FAM133BQ5BKY9 247 aaKnown RBP10.71□□□□□ -0.7
MCF2-209ENST00000520602 AGBL2Q5U5Z8 902 aa10.71□□□□□ -0.7
MCF2-209ENST00000520602 DCAF12L1Q5VU92 463 aa10.71□□□□□ -0.7
MCF2-209ENST00000520602 JADE1Q6IE81 842 aa10.71□□□□□ -0.7
MCF2-209ENST00000520602 ZNF572Q7Z3I7 529 aaPredicted RBP10.71□□□□□ -0.7
MCF2-209ENST00000520602 ACOT1Q86TX2 421 aa10.71□□□□□ -0.7
MCF2-209ENST00000520602 TMEM121Q9BTD3 319 aa10.71□□□□□ -0.7
MCF2-209ENST00000520602 C10orf88Q9H8K7 445 aa10.71□□□□□ -0.7
MCF2-209ENST00000520602 TXNRD2Q9NNW7 524 aa10.71□□□□□ -0.7
MCF2-209ENST00000520602 AVENQ9NQS1 362 aaPredicted RBP10.71□□□□□ -0.7
MCF2-209ENST00000520602 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.71□□□□□ -0.7
MCF2-209ENST00000520602 COQ4Q9Y3A0 265 aa10.71□□□□□ -0.7
MCF2-209ENST00000520602 GOLGB1Q14789 3259 aaKnown RBP10.7□□□□□ -0.7
MCF2-209ENST00000520602 LY75O60449 1722 aa10.7□□□□□ -0.7
MCF2-209ENST00000520602 PSTPIP1O43586 416 aa10.7□□□□□ -0.7
MCF2-209ENST00000520602 RARBP10826 455 aa10.7□□□□□ -0.7
MCF2-209ENST00000520602 RARGP13631 454 aa10.7□□□□□ -0.7
MCF2-209ENST00000520602 TAS2R40P59535 323 aa10.7□□□□□ -0.7
MCF2-209ENST00000520602 PPIL2Q13356 520 aa10.7□□□□□ -0.7
MCF2-209ENST00000520602 DGKDQ16760 1214 aa10.7□□□□□ -0.7
MCF2-209ENST00000520602 DUPD1Q68J44 220 aa10.7□□□□□ -0.7
MCF2-209ENST00000520602 TRMT10CQ7L0Y3 403 aaKnown RBP10.7□□□□□ -0.7
MCF2-209ENST00000520602 SPATS2Q86XZ4 545 aaKnown RBP10.7□□□□□ -0.7
MCF2-209ENST00000520602 EFCAB13Q8IY85 973 aa10.7□□□□□ -0.7
MCF2-209ENST00000520602 TTC13Q8NBP0 860 aa10.7□□□□□ -0.7
MCF2-209ENST00000520602 FAF2Q96CS3 445 aa10.7□□□□□ -0.7
MCF2-209ENST00000520602 CHMP6Q96FZ7 201 aa10.7□□□□□ -0.7
MCF2-209ENST00000520602 PWWP2AQ96N64 755 aa10.7□□□□□ -0.7
MCF2-209ENST00000520602 OSMRQ99650 979 aa10.7□□□□□ -0.7
MCF2-209ENST00000520602 NIFKQ9BYG3 293 aaKnown RBP10.7□□□□□ -0.7
MCF2-209ENST00000520602 CDT1Q9H211 546 aa10.7□□□□□ -0.7
MCF2-209ENST00000520602 SAE1Q9UBE0 346 aaPredicted RBP10.7□□□□□ -0.7
MCF2-209ENST00000520602 CPA4Q9UI42 421 aa10.7□□□□□ -0.7
MCF2-209ENST00000520602 MAGED2Q9UNF1 606 aaPredicted RBP10.7□□□□□ -0.7
MCF2-209ENST00000520602 HUS1O60921 280 aa10.7□□□□□ -0.7
MCF2-209ENST00000520602 CFHP08603 1231 aa10.7□□□□□ -0.7
MCF2-209ENST00000520602 ATP4AP20648 1035 aa10.7□□□□□ -0.7
MCF2-209ENST00000520602 ICAM3P32942 547 aa10.7□□□□□ -0.7
MCF2-209ENST00000520602 MSH2P43246 934 aa10.7□□□□□ -0.7
MCF2-209ENST00000520602 BCAR1P56945 870 aa10.7□□□□□ -0.7
MCF2-209ENST00000520602 IFI35P80217 286 aaPredicted RBP10.7□□□□□ -0.7
MCF2-209ENST00000520602 PTPN11Q06124 597 aaPredicted RBP10.7□□□□□ -0.7
MCF2-209ENST00000520602 TTC16Q8NEE8 873 aa10.7□□□□□ -0.7
MCF2-209ENST00000520602 DCLK3Q9C098 648 aa10.7□□□□□ -0.7
MCF2-209ENST00000520602 DHX35Q9H5Z1 703 aaKnown RBP10.7□□□□□ -0.7
MCF2-209ENST00000520602 GGT7Q9UJ14 662 aa10.7□□□□□ -0.7
MCF2-209ENST00000520602 SPDYE5A6NIY4 337 aa10.7□□□□□ -0.7
MCF2-209ENST00000520602 ASS1P00966 412 aaKnown RBP10.7□□□□□ -0.7
MCF2-209ENST00000520602 INHBAP08476 426 aa10.7□□□□□ -0.7
MCF2-209ENST00000520602 ZSCAN5DPP0CG00 497 aa10.7□□□□□ -0.7
MCF2-209ENST00000520602 ALDH3A1P30838 453 aa10.7□□□□□ -0.7
MCF2-209ENST00000520602 ARL4CP56559 192 aa10.7□□□□□ -0.7
MCF2-209ENST00000520602 IL9RQ01113 521 aa10.7□□□□□ -0.7
MCF2-209ENST00000520602 TFDP2Q14188 446 aa10.7□□□□□ -0.7
MCF2-209ENST00000520602 TAF1CQ15572 869 aaPredicted RBP10.7□□□□□ -0.7
MCF2-209ENST00000520602 SMAD1Q15797 465 aaKnown RBP10.7□□□□□ -0.7
MCF2-209ENST00000520602 DENND1BQ6P3S1 775 aa10.7□□□□□ -0.7
MCF2-209ENST00000520602 ARHGEF18Q6ZSZ5 1173 aa10.7□□□□□ -0.7
MCF2-209ENST00000520602 HACE1Q8IYU2 909 aa10.7□□□□□ -0.7
MCF2-209ENST00000520602 CFAP36Q96G28 342 aa10.7□□□□□ -0.7
MCF2-209ENST00000520602 SMYD3Q9H7B4 428 aa10.7□□□□□ -0.7
MCF2-209ENST00000520602 PRM3Q9NNZ6 103 aa10.7□□□□□ -0.7
MCF2-209ENST00000520602 KLHL14Q9P2G3 628 aa10.7□□□□□ -0.7
MCF2-209ENST00000520602 RBPJLQ9UBG7 517 aa10.7□□□□□ -0.7
MCF2-209ENST00000520602 AGTP01019 485 aa10.69□□□□□ -0.7
MCF2-209ENST00000520602 RBP3P10745 1247 aa10.69□□□□□ -0.7
MCF2-209ENST00000520602 MAGEA4P43358 317 aa10.69□□□□□ -0.7
MCF2-209ENST00000520602 PRAMEF19Q5SWL8 479 aa10.69□□□□□ -0.7
MCF2-209ENST00000520602 TTC27Q6P3X3 843 aa10.69□□□□□ -0.7
MCF2-209ENST00000520602 EXD1Q8NHP7 514 aa10.69□□□□□ -0.7
MCF2-209ENST00000520602 SPATA18Q8TC71 538 aa10.69□□□□□ -0.7
MCF2-209ENST00000520602 XPO6Q96QU8 1125 aaKnown RBP10.69□□□□□ -0.7
MCF2-209ENST00000520602 STRA6Q9BX79 667 aa10.69□□□□□ -0.7
MCF2-209ENST00000520602 WDR35Q9P2L0 1181 aa10.69□□□□□ -0.7
MCF2-209ENST00000520602 HES2Q9Y543 173 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms