RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 OBP2AQ9NY56 170 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 CLEC1BQ9P126 229 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 FBXL5Q9UKA1 691 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 CPSF3Q9UKF6 684 aaKnown RBP3.08□□□□□ -1.92
MCF2-208ENST00000519895 ITGA11Q9UKX5 1188 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 KCNH3Q9ULD8 1083 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 UBQLN1Q9UMX0 589 aaKnown RBP3.08□□□□□ -1.92
MCF2-208ENST00000519895 PCDHGC3Q9UN70 934 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 KIAA1024Q9UPX6 916 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 COQ4Q9Y3A0 265 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 ASB3Q9Y575 518 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 CLIC4Q9Y696 253 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 CDH23Q9H251 3354 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 hCG_1642624A0A1W2PR95 340 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 TTC26A0AVF1 554 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 OR6C75A6NL08 312 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 WNT7AO00755 349 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 CALUO43852 315 aaPredicted RBP3.08□□□□□ -1.92
MCF2-208ENST00000519895 TACC1O75410 805 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 NPTXRO95502 500 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 ABL1P00519 1130 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 RPL13P26373 211 aaKnown RBP3.08□□□□□ -1.92
MCF2-208ENST00000519895 STAT6P42226 847 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 PPP3CCP48454 512 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 DSG1Q02413 1049 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 GUCA2AQ02747 115 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 TUSC3Q13454 348 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 DHX8Q14562 1220 aaKnown RBP3.08□□□□□ -1.92
MCF2-208ENST00000519895 PPP2R5DQ14738 602 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 ZCWPW2Q504Y3 356 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 NOMO2Q5JPE7 1267 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 ZNF658Q5TYW1 1059 aaPredicted RBP3.08□□□□□ -1.92
MCF2-208ENST00000519895 C1orf228Q6PIY5 440 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 BEND5Q7L4P6 421 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 FILIP1Q7Z7B0 1213 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 TMC8Q8IU68 726 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 WDR49Q8IV35 697 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 TPH2Q8IWU9 490 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 COLGALT2Q8IYK4 626 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 FIBCD1Q8N539 461 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 TOP6BLQ8N6T0 577 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 MLKLQ8NB16 471 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 SMG8Q8ND04 991 aaKnown RBP3.08□□□□□ -1.92
MCF2-208ENST00000519895 FAM174AQ8TBP5 190 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 E2F7Q96AV8 911 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 CCDC43Q96MW1 224 aaKnown RBP3.08□□□□□ -1.92
MCF2-208ENST00000519895 ZNF558Q96NG5 402 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 CYP3A43Q9HB55 503 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 KMT5AQ9NQR1 393 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 ZDHHC7Q9NXF8 308 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 EHD2Q9NZN4 543 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 SAMM50Q9Y512 469 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 PCDHB12Q9Y5F1 795 aa3.08□□□□□ -1.92
MCF2-208ENST00000519895 EVPLQ92817 2033 aa3.07□□□□□ -1.92
MCF2-208ENST00000519895 TRAPPC3O43617 180 aa3.07□□□□□ -1.92
MCF2-208ENST00000519895 HYAL3O43820 417 aaPredicted RBP3.07□□□□□ -1.92
MCF2-208ENST00000519895 FAM13AO94988 1023 aa3.07□□□□□ -1.92
MCF2-208ENST00000519895 CTSAP10619 480 aa3.07□□□□□ -1.92
MCF2-208ENST00000519895 ITGA4P13612 1032 aa3.07□□□□□ -1.92
MCF2-208ENST00000519895 SPINK2P20155 84 aa3.07□□□□□ -1.92
MCF2-208ENST00000519895 FGFR3P22607 806 aa3.07□□□□□ -1.92
MCF2-208ENST00000519895 DDX6P26196 483 aaKnown RBP eCLIP3.07□□□□□ -1.92
MCF2-208ENST00000519895 MAPK1P28482 360 aa3.07□□□□□ -1.92
MCF2-208ENST00000519895 MAGEA11P43364 429 aa3.07□□□□□ -1.92
MCF2-208ENST00000519895 UCNP55089 124 aa3.07□□□□□ -1.92
MCF2-208ENST00000519895 OXCT1P55809 520 aa3.07□□□□□ -1.92
MCF2-208ENST00000519895 NLRP11P59045 1033 aaKnown RBP3.07□□□□□ -1.92
MCF2-208ENST00000519895 PRPF4BQ13523 1007 aaKnown RBP3.07□□□□□ -1.92
MCF2-208ENST00000519895 SNW1Q13573 536 aaKnown RBP3.07□□□□□ -1.92
MCF2-208ENST00000519895 SMC1AQ14683 1233 aaKnown RBP3.07□□□□□ -1.92
MCF2-208ENST00000519895 MTERF2Q49AM1 385 aa3.07□□□□□ -1.92
MCF2-208ENST00000519895 ATF7IP2Q5U623 682 aa3.07□□□□□ -1.92
MCF2-208ENST00000519895 SPATA1Q5VX52 437 aa3.07□□□□□ -1.92
MCF2-208ENST00000519895 CENPPQ6IPU0 288 aa3.07□□□□□ -1.92
MCF2-208ENST00000519895 GLB1LQ6UWU2 654 aa3.07□□□□□ -1.92
MCF2-208ENST00000519895 C15orf39Q6ZRI6 1047 aa3.07□□□□□ -1.92
MCF2-208ENST00000519895 EEPD1Q7L9B9 569 aa3.07□□□□□ -1.92
MCF2-208ENST00000519895 GPBP1Q86WP2 473 aa3.07□□□□□ -1.92
MCF2-208ENST00000519895 TMEM192Q8IY95 271 aa3.07□□□□□ -1.92
MCF2-208ENST00000519895 CKAP2LQ8IYA6 745 aa3.07□□□□□ -1.92
MCF2-208ENST00000519895 DBF4BQ8NFT6 615 aa3.07□□□□□ -1.92
MCF2-208ENST00000519895 VN1R2Q8NFZ6 395 aa3.07□□□□□ -1.92
MCF2-208ENST00000519895 SLC22A17Q8WUG5 538 aa3.07□□□□□ -1.92
MCF2-208ENST00000519895 CASP10Q92851 521 aa3.07□□□□□ -1.92
MCF2-208ENST00000519895 WNT8BQ93098 351 aa3.07□□□□□ -1.92
MCF2-208ENST00000519895 PAGE5Q96GU1 130 aa3.07□□□□□ -1.92
MCF2-208ENST00000519895 PGBD1Q96JS3 809 aa3.07□□□□□ -1.92
MCF2-208ENST00000519895 FCRL3Q96P31 734 aaPredicted RBP3.07□□□□□ -1.92
MCF2-208ENST00000519895 EDEM3Q9BZQ6 932 aa3.07□□□□□ -1.92
MCF2-208ENST00000519895 ZBP1Q9H171 429 aa3.07□□□□□ -1.92
MCF2-208ENST00000519895 PLEKHA4Q9H4M7 779 aa3.07□□□□□ -1.92
MCF2-208ENST00000519895 RSAD1Q9HA92 442 aa3.07□□□□□ -1.92
MCF2-208ENST00000519895 PNPLA8Q9NP80 782 aa3.07□□□□□ -1.92
MCF2-208ENST00000519895 TRPV5Q9NQA5 729 aa3.07□□□□□ -1.92
MCF2-208ENST00000519895 SPG21Q9NZD8 308 aa3.07□□□□□ -1.92
MCF2-208ENST00000519895 KIAA1257Q9ULG3 409 aa3.07□□□□□ -1.92
MCF2-208ENST00000519895 MYO6Q9UM54 1294 aa3.07□□□□□ -1.92
MCF2-208ENST00000519895 CITO14578 2027 aa3.07□□□□□ -1.92
MCF2-208ENST00000519895 NUP210Q8TEM1 1887 aaPredicted RBP3.07□□□□□ -1.92
MCF2-208ENST00000519895 VWA3AA6NCI4 1184 aa3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms