RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 TRIM65Q6PJ69 517 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 KIFC1Q9BW19 673 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 C2CD2Q9Y426 696 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 PEG3Q9GZU2 1588 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 TEX28O15482 410 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 HUS1O60921 280 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 ATP4AP20648 1035 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 HSD17B3P37058 310 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 CASP4P49662 377 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 GMFBP60983 142 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 CNTN1Q12860 1018 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 ZYXQ15942 572 aaKnown RBP11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 ZNF699Q32M78 642 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 ZNF57Q68EA5 555 aaPredicted RBP11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 TSHZ1Q6ZSZ6 1077 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 CHMP1BQ7LBR1 199 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 PTPRN2Q92932 1015 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 RFT1Q96AA3 541 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 SH3KBP1Q96B97 665 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 TEX13BQ9BXU2 312 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 SP110Q9HB58 689 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 CLEC11AQ9Y240 323 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 HBS1LQ9Y450 684 aaKnown RBP11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 EDC4Q6P2E9 1401 aaKnown RBP11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 PNMA6FA0A0J9YX94 578 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 PSMB9P28065 219 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 ALDH1B1P30837 517 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 MDH1BQ5I0G3 518 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 PEG10Q86TG7 708 aaKnown RBP11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 CMTR1Q8N1G2 835 aaKnown RBP11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 GIMAP8Q8ND71 665 aaPredicted RBP11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 ASIC4Q96FT7 647 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 BTBD10Q9BSF8 475 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 BHMT2Q9H2M3 363 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 RSAD1Q9HA92 442 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 PLEKHA5Q9HAU0 1116 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 HAO1Q9UJM8 370 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 MYO3BQ8WXR4 1341 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 HEATR9A2RTY3 570 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 GSAPA4D1B5 854 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 EFCAB10A6NFE3 127 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 QARSP47897 775 aaKnown RBP11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 FOXD4Q12950 439 aaPredicted RBP11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 GTF2H3Q13889 308 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 EDRF1Q3B7T1 1238 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 SPDYAQ5MJ70 313 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 THOC7Q6I9Y2 204 aaKnown RBP11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 C3orf62Q6ZUJ4 267 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 CENPLQ8N0S6 344 aaPredicted RBP11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 SPICE1Q8N0Z3 855 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 DHRSXQ8N5I4 330 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 MSL3Q8N5Y2 521 aaKnown RBP11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 HAVCR1Q96D42 359 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 ZNF594Q96JF6 807 aaPredicted RBP11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 GANQ9H2C0 597 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 PCMTD2Q9NV79 361 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 CIDEBQ9UHD4 219 aa11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 FNDC3AQ9Y2H6 1198 aaKnown RBP11.68□□□□□ -0.54
LIMCH1-217ENST00000512946 LOC100653049A0A140TA62 436 aa11.67□□□□□ -0.54
LIMCH1-217ENST00000512946 RAD51CO43502 376 aa11.67□□□□□ -0.54
LIMCH1-217ENST00000512946 TIMM44O43615 452 aa11.67□□□□□ -0.54
LIMCH1-217ENST00000512946 KRT34O76011 436 aa11.67□□□□□ -0.54
LIMCH1-217ENST00000512946 HOXC9P31274 260 aa11.67□□□□□ -0.54
LIMCH1-217ENST00000512946 QPRTQ15274 297 aa11.67□□□□□ -0.54
LIMCH1-217ENST00000512946 UGT3A1Q6NUS8 523 aa11.67□□□□□ -0.54
LIMCH1-217ENST00000512946 MARK2Q7KZI7 788 aaKnown RBP11.67□□□□□ -0.54
LIMCH1-217ENST00000512946 ZNF677Q86XU0 584 aa11.67□□□□□ -0.54
LIMCH1-217ENST00000512946 EIF1ADQ8N9N8 165 aaKnown RBP11.67□□□□□ -0.54
LIMCH1-217ENST00000512946 KYQ8NBH2 561 aa11.67□□□□□ -0.54
LIMCH1-217ENST00000512946 OR6B3Q8NGW1 331 aa11.67□□□□□ -0.54
LIMCH1-217ENST00000512946 LENG1Q96BZ8 264 aaPredicted RBP11.67□□□□□ -0.54
LIMCH1-217ENST00000512946 SLITRK2Q9H156 845 aa11.67□□□□□ -0.54
LIMCH1-217ENST00000512946 WHRNQ9P202 907 aa11.67□□□□□ -0.54
LIMCH1-217ENST00000512946 FRMPD2Q68DX3 1309 aaPredicted RBP11.67□□□□□ -0.54
LIMCH1-217ENST00000512946 SNRPFP62306 86 aaKnown RBP11.67□□□□□ -0.54
LIMCH1-217ENST00000512946 DNAJC3Q13217 504 aa11.67□□□□□ -0.54
LIMCH1-217ENST00000512946 AGAP9Q5VTM2 703 aa11.67□□□□□ -0.54
LIMCH1-217ENST00000512946 TMEM270Q6UE05 265 aa11.67□□□□□ -0.54
LIMCH1-217ENST00000512946 LINC00523Q86TU6 105 aa11.67□□□□□ -0.54
LIMCH1-217ENST00000512946 UBASH3BQ8TF42 649 aa11.67□□□□□ -0.54
LIMCH1-217ENST00000512946 DCUN1D1Q96GG9 259 aa11.67□□□□□ -0.54
LIMCH1-217ENST00000512946 NUAK2Q9H093 628 aa11.67□□□□□ -0.54
LIMCH1-217ENST00000512946 C8orf4Q9NR00 106 aa11.67□□□□□ -0.54
LIMCH1-217ENST00000512946 TMEM51Q9NW97 253 aa11.67□□□□□ -0.54
LIMCH1-217ENST00000512946 XPO7Q9UIA9 1087 aaKnown RBP11.67□□□□□ -0.54
LIMCH1-217ENST00000512946 GNB5O14775 395 aa11.67□□□□□ -0.54
LIMCH1-217ENST00000512946 POTEIP0CG38 1075 aa11.67□□□□□ -0.54
LIMCH1-217ENST00000512946 PGBD4Q96DM1 585 aa11.67□□□□□ -0.54
LIMCH1-217ENST00000512946 SENP7Q9BQF6 1050 aa11.67□□□□□ -0.54
LIMCH1-217ENST00000512946 SLC52A2Q9HAB3 445 aa11.67□□□□□ -0.54
LIMCH1-217ENST00000512946 ALG13Q9NP73 1137 aaKnown RBP11.67□□□□□ -0.54
LIMCH1-217ENST00000512946 CYLDQ9NQC7 956 aa11.67□□□□□ -0.54
LIMCH1-217ENST00000512946 RBM12Q9NTZ6 932 aaKnown RBP11.67□□□□□ -0.54
LIMCH1-217ENST00000512946 AKT3Q9Y243 479 aa11.67□□□□□ -0.54
LIMCH1-217ENST00000512946 CSADQ9Y600 493 aa11.67□□□□□ -0.54
LIMCH1-217ENST00000512946 FHOD1Q9Y613 1164 aa11.67□□□□□ -0.54
LIMCH1-217ENST00000512946 KIAA0586Q9BVV6 1533 aa11.67□□□□□ -0.54
LIMCH1-217ENST00000512946 LDLRP01130 860 aa11.67□□□□□ -0.54
LIMCH1-217ENST00000512946 EIF4A1P60842 406 aaKnown RBP11.67□□□□□ -0.54
LIMCH1-217ENST00000512946 ABCB5Q2M3G0 1257 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms