RNA–Protein interactions for RNA: ENST00000510569.5

NUP54-209, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-209ENST00000510569 DDX17Q92841 729 aaKnown RBP6.57□□□□□ -1.36
NUP54-209ENST00000510569 FAM136AQ96C01 138 aa6.57□□□□□ -1.36
NUP54-209ENST00000510569 MRPL46Q9H2W6 279 aaKnown RBP6.57□□□□□ -1.36
NUP54-209ENST00000510569 SERTAD4Q9NUC0 356 aa6.57□□□□□ -1.36
NUP54-209ENST00000510569 RNF7Q9UBF6 113 aa6.57□□□□□ -1.36
NUP54-209ENST00000510569 ZNF70Q9UC06 446 aaPredicted RBP6.57□□□□□ -1.36
NUP54-209ENST00000510569 FEZ2Q9UHY8 353 aaPredicted RBP6.57□□□□□ -1.36
NUP54-209ENST00000510569 PADI4Q9UM07 663 aa6.57□□□□□ -1.36
NUP54-209ENST00000510569 PCDHA3Q9Y5H8 950 aa6.57□□□□□ -1.36
NUP54-209ENST00000510569 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa6.56□□□□□ -1.36
NUP54-209ENST00000510569 PDCP20941 246 aa6.56□□□□□ -1.36
NUP54-209ENST00000510569 CD6P30203 668 aa6.56□□□□□ -1.36
NUP54-209ENST00000510569 TFF2Q03403 129 aa6.56□□□□□ -1.36
NUP54-209ENST00000510569 BMPR2Q13873 1038 aa6.56□□□□□ -1.36
NUP54-209ENST00000510569 PLAC9Q5JTB6 97 aa6.56□□□□□ -1.36
NUP54-209ENST00000510569 TMEM240Q5SV17 173 aa6.56□□□□□ -1.36
NUP54-209ENST00000510569 TEDDM1Q5T9Z0 273 aa6.56□□□□□ -1.36
NUP54-209ENST00000510569 CAMKK1Q8N5S9 505 aa6.56□□□□□ -1.36
NUP54-209ENST00000510569 SEMA6DQ8NFY4 1073 aa6.56□□□□□ -1.36
NUP54-209ENST00000510569 SCARB1Q8WTV0 552 aa6.56□□□□□ -1.36
NUP54-209ENST00000510569 NAF1Q96HR8 494 aaKnown RBP6.56□□□□□ -1.36
NUP54-209ENST00000510569 SLAMF7Q9NQ25 335 aa6.56□□□□□ -1.36
NUP54-209ENST00000510569 DKK3Q9UBP4 350 aa6.56□□□□□ -1.36
NUP54-209ENST00000510569 ABCF2Q9UG63 623 aa6.56□□□□□ -1.36
NUP54-209ENST00000510569 SERGEFQ9UGK8 458 aa6.56□□□□□ -1.36
NUP54-209ENST00000510569 NXPH3O95157 252 aa6.55□□□□□ -1.36
NUP54-209ENST00000510569 EBLN1P0CF75 366 aa6.55□□□□□ -1.36
NUP54-209ENST00000510569 CHRM3P20309 590 aa6.55□□□□□ -1.36
NUP54-209ENST00000510569 PHKA1P46020 1223 aa6.55□□□□□ -1.36
NUP54-209ENST00000510569 GCLCP48506 637 aaPredicted RBP6.55□□□□□ -1.36
NUP54-209ENST00000510569 EVA1CP58658 441 aa6.55□□□□□ -1.36
NUP54-209ENST00000510569 LLGL1Q15334 1064 aa6.55□□□□□ -1.36
NUP54-209ENST00000510569 VPS53Q5VIR6 699 aa6.55□□□□□ -1.36
NUP54-209ENST00000510569 SUMO4Q6EEV6 95 aa6.55□□□□□ -1.36
NUP54-209ENST00000510569 USP45Q70EL2 814 aa6.55□□□□□ -1.36
NUP54-209ENST00000510569 ZNF551Q7Z340 670 aaPredicted RBP6.55□□□□□ -1.36
NUP54-209ENST00000510569 ATRIPQ8WXE1 791 aa6.55□□□□□ -1.36
NUP54-209ENST00000510569 DDB2Q92466 427 aa6.55□□□□□ -1.36
NUP54-209ENST00000510569 ZNF778Q96MU6 729 aa6.55□□□□□ -1.36
NUP54-209ENST00000510569 RAD54BQ9Y620 910 aa6.55□□□□□ -1.36
NUP54-209ENST00000510569 VPS4BO75351 444 aa6.54□□□□□ -1.36
NUP54-209ENST00000510569 CCND1P24385 295 aa6.54□□□□□ -1.36
NUP54-209ENST00000510569 ZNF81P51508 661 aa6.54□□□□□ -1.36
NUP54-209ENST00000510569 TBCCQ15814 346 aa6.54□□□□□ -1.36
NUP54-209ENST00000510569 EZH2Q15910 746 aaKnown RBP6.54□□□□□ -1.36
NUP54-209ENST00000510569 USP37Q86T82 979 aa6.54□□□□□ -1.36
NUP54-209ENST00000510569 KLHDC4Q8TBB5 520 aa6.54□□□□□ -1.36
NUP54-209ENST00000510569 FAM167AQ96KS9 214 aa6.54□□□□□ -1.36
NUP54-209ENST00000510569 SLC29A3Q9BZD2 475 aa6.54□□□□□ -1.36
NUP54-209ENST00000510569 SERHLQ9NQF3 203 aa6.54□□□□□ -1.36
NUP54-209ENST00000510569 ST6GALNAC1Q9NSC7 600 aaPredicted RBP6.54□□□□□ -1.36
NUP54-209ENST00000510569 FNDC1Q4ZHG4 1894 aaPredicted RBP6.53□□□□□ -1.36
NUP54-209ENST00000510569 FTLP02792 175 aaPredicted RBP6.53□□□□□ -1.36
NUP54-209ENST00000510569 GNAI2P04899 355 aa6.53□□□□□ -1.36
NUP54-209ENST00000510569 HNRNPCP07910 306 aaKnown RBP eCLIP6.53□□□□□ -1.36
NUP54-209ENST00000510569 TYRP14679 529 aa6.53□□□□□ -1.36
NUP54-209ENST00000510569 JUPP14923 745 aa6.53□□□□□ -1.36
NUP54-209ENST00000510569 SSBP2P81877 361 aaPredicted RBP6.53□□□□□ -1.36
NUP54-209ENST00000510569 BOP1Q14137 746 aaKnown RBP6.53□□□□□ -1.36
NUP54-209ENST00000510569 ZNF618Q5T7W0 954 aa6.53□□□□□ -1.36
NUP54-209ENST00000510569 DTX2Q86UW9 622 aa6.53□□□□□ -1.36
NUP54-209ENST00000510569 PPP1R3BQ86XI6 285 aa6.53□□□□□ -1.36
NUP54-209ENST00000510569 TNPO1Q92973 898 aaKnown RBP6.53□□□□□ -1.36
NUP54-209ENST00000510569 NELL2Q99435 816 aa6.53□□□□□ -1.36
NUP54-209ENST00000510569 SMAD5Q99717 465 aaKnown RBP6.53□□□□□ -1.36
NUP54-209ENST00000510569 LMBRD1Q9NUN5 540 aa6.53□□□□□ -1.36
NUP54-209ENST00000510569 TARM1B6A8C7 271 aa6.52□□□□□ -1.37
NUP54-209ENST00000510569 M0QYG6 137 aa6.52□□□□□ -1.37
NUP54-209ENST00000510569 IGSF3O75054 1194 aa6.52□□□□□ -1.37
NUP54-209ENST00000510569 LATS1O95835 1130 aa6.52□□□□□ -1.37
NUP54-209ENST00000510569 PIM1P11309 404 aaPredicted RBP6.52□□□□□ -1.37
NUP54-209ENST00000510569 MAP2K6P52564 334 aa6.52□□□□□ -1.37
NUP54-209ENST00000510569 EMC10Q5UCC4 262 aa6.52□□□□□ -1.37
NUP54-209ENST00000510569 FAM160B1Q5W0V3 765 aa6.52□□□□□ -1.37
NUP54-209ENST00000510569 ZNF782Q6ZMW2 699 aaPredicted RBP6.52□□□□□ -1.37
NUP54-209ENST00000510569 TBC1D5Q92609 795 aa6.52□□□□□ -1.37
NUP54-209ENST00000510569 REPS1Q96D71 796 aa6.52□□□□□ -1.37
NUP54-209ENST00000510569 WDR26Q9H7D7 661 aa6.52□□□□□ -1.37
NUP54-209ENST00000510569 ARHGEF3Q9NR81 526 aa6.52□□□□□ -1.37
NUP54-209ENST00000510569 HESX1Q9UBX0 185 aa6.52□□□□□ -1.37
NUP54-209ENST00000510569 SNUPNO95149 360 aaKnown RBP6.51□□□□□ -1.37
NUP54-209ENST00000510569 AHSGP02765 367 aa6.51□□□□□ -1.37
NUP54-209ENST00000510569 POU2F2P09086 479 aa6.51□□□□□ -1.37
NUP54-209ENST00000510569 SFRP4Q6FHJ7 346 aaPredicted RBP6.51□□□□□ -1.37
NUP54-209ENST00000510569 ZNF425Q6IV72 752 aa6.51□□□□□ -1.37
NUP54-209ENST00000510569 CEP85Q6P2H3 762 aa6.51□□□□□ -1.37
NUP54-209ENST00000510569 ANKRD16Q6P6B7 361 aa6.51□□□□□ -1.37
NUP54-209ENST00000510569 CPA6Q8N4T0 437 aa6.51□□□□□ -1.37
NUP54-209ENST00000510569 SEMA4CQ9C0C4 833 aa6.51□□□□□ -1.37
NUP54-209ENST00000510569 WDR91A4D1P6 747 aa6.5□□□□□ -1.37
NUP54-209ENST00000510569 ZNF213O14771 459 aa6.5□□□□□ -1.37
NUP54-209ENST00000510569 PPM1DO15297 605 aa6.5□□□□□ -1.37
NUP54-209ENST00000510569 ERBB2P04626 1255 aa6.5□□□□□ -1.37
NUP54-209ENST00000510569 ZNF134P52741 427 aa6.5□□□□□ -1.37
NUP54-209ENST00000510569 EIF2B5Q13144 721 aaKnown RBP6.5□□□□□ -1.37
NUP54-209ENST00000510569 SRSF7Q16629 238 aaKnown RBP eCLIP6.5□□□□□ -1.37
NUP54-209ENST00000510569 AARS2Q5JTZ9 985 aaKnown RBP6.5□□□□□ -1.37
NUP54-209ENST00000510569 EPHA10Q5JZY3 1008 aa6.5□□□□□ -1.37
NUP54-209ENST00000510569 TMEM108Q6UXF1 575 aa6.5□□□□□ -1.37
NUP54-209ENST00000510569 VGLL2Q8N8G2 317 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms