RNA–Protein interactions for RNA: ENST00000509009.5

PDPN-208, Transcript of podoplanin, humanhuman

TSL 4 BASIC

Gene PDPN, Length 571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-208ENST00000509009 MAMSTRQ6ZN01 415 aa13.47□□□□□ -0.25
PDPN-208ENST00000509009 DCP1BQ8IZD4 617 aaKnown RBP13.47□□□□□ -0.25
PDPN-208ENST00000509009 GLIS3Q8NEA6 775 aa13.47□□□□□ -0.25
PDPN-208ENST00000509009 FAM200AQ8TCP9 573 aa13.47□□□□□ -0.25
PDPN-208ENST00000509009 SPPL2BQ8TCT7 592 aa13.47□□□□□ -0.25
PDPN-208ENST00000509009 GIPC2Q8TF65 315 aa13.47□□□□□ -0.25
PDPN-208ENST00000509009 FAM3CQ92520 227 aa13.47□□□□□ -0.25
PDPN-208ENST00000509009 ZNF560Q96MR9 790 aa13.47□□□□□ -0.25
PDPN-208ENST00000509009 SEPT5Q99719 369 aaPredicted RBP13.47□□□□□ -0.25
PDPN-208ENST00000509009 LRRC27Q9C0I9 530 aa13.47□□□□□ -0.25
PDPN-208ENST00000509009 TNMDQ9H2S6 317 aa13.47□□□□□ -0.25
PDPN-208ENST00000509009 TMLHEQ9NVH6 421 aa13.47□□□□□ -0.25
PDPN-208ENST00000509009 RBAKQ9NYW8 714 aaPredicted RBP13.47□□□□□ -0.25
PDPN-208ENST00000509009 NDRG2Q9UN36 371 aaKnown RBP13.47□□□□□ -0.25
PDPN-208ENST00000509009 CUTAO60888 179 aa13.46□□□□□ -0.25
PDPN-208ENST00000509009 HUS1O60921 280 aa13.46□□□□□ -0.25
PDPN-208ENST00000509009 YEATS4O95619 227 aa13.46□□□□□ -0.25
PDPN-208ENST00000509009 WEE1P30291 646 aa13.46□□□□□ -0.25
PDPN-208ENST00000509009 RBP5P82980 135 aa13.46□□□□□ -0.25
PDPN-208ENST00000509009 MTAPQ13126 283 aa13.46□□□□□ -0.25
PDPN-208ENST00000509009 VEPH1Q14D04 833 aa13.46□□□□□ -0.25
PDPN-208ENST00000509009 FOXD4L5Q5VV16 416 aaPredicted RBP13.46□□□□□ -0.25
PDPN-208ENST00000509009 SHC4Q6S5L8 630 aa13.46□□□□□ -0.25
PDPN-208ENST00000509009 YAF2Q8IY57 180 aa13.46□□□□□ -0.25
PDPN-208ENST00000509009 GPD1LQ8N335 351 aa13.46□□□□□ -0.25
PDPN-208ENST00000509009 PDCL2Q8N4E4 241 aa13.46□□□□□ -0.25
PDPN-208ENST00000509009 LRRC52Q8N7C0 313 aa13.46□□□□□ -0.25
PDPN-208ENST00000509009 SUMF1Q8NBK3 374 aa13.46□□□□□ -0.25
PDPN-208ENST00000509009 ZNF507Q8TCN5 953 aa13.46□□□□□ -0.25
PDPN-208ENST00000509009 NOC3LQ8WTT2 800 aaKnown RBP13.46□□□□□ -0.25
PDPN-208ENST00000509009 FOXD4L4Q8WXT5 416 aaPredicted RBP13.46□□□□□ -0.25
PDPN-208ENST00000509009 NELL1Q92832 810 aa13.46□□□□□ -0.25
PDPN-208ENST00000509009 ACBD6Q9BR61 282 aa13.46□□□□□ -0.25
PDPN-208ENST00000509009 SLC46A2Q9BY10 475 aa13.46□□□□□ -0.25
PDPN-208ENST00000509009 TRIM9Q9C026 710 aa13.46□□□□□ -0.25
PDPN-208ENST00000509009 CUEDC2Q9H467 287 aa13.46□□□□□ -0.25
PDPN-208ENST00000509009 TASP1Q9H6P5 420 aa13.46□□□□□ -0.25
PDPN-208ENST00000509009 LMAN1LQ9HAT1 526 aa13.46□□□□□ -0.25
PDPN-208ENST00000509009 GDAP2Q9NXN4 497 aa13.46□□□□□ -0.25
PDPN-208ENST00000509009 SIX4Q9UIU6 781 aa13.46□□□□□ -0.25
PDPN-208ENST00000509009 L1RE1Q9UN81 338 aa13.46□□□□□ -0.25
PDPN-208ENST00000509009 PCDHB5Q9Y5E4 795 aa13.46□□□□□ -0.25
PDPN-208ENST00000509009 PIAS3Q9Y6X2 628 aa13.46□□□□□ -0.25
PDPN-208ENST00000509009 ANK1P16157 1881 aa13.46□□□□□ -0.26
PDPN-208ENST00000509009 ZNF233A6NK53 670 aa13.45□□□□□ -0.26
PDPN-208ENST00000509009 DPYSL4O14531 572 aa13.45□□□□□ -0.26
PDPN-208ENST00000509009 KIAA0391O15091 583 aaKnown RBP13.45□□□□□ -0.26
PDPN-208ENST00000509009 F11P03951 625 aa13.45□□□□□ -0.26
PDPN-208ENST00000509009 HMGA1P17096 107 aaKnown RBP13.45□□□□□ -0.26
PDPN-208ENST00000509009 CCNE1P24864 410 aa13.45□□□□□ -0.26
PDPN-208ENST00000509009 AMPD3Q01432 767 aa13.45□□□□□ -0.26
PDPN-208ENST00000509009 BFSP1Q12934 665 aa13.45□□□□□ -0.26
PDPN-208ENST00000509009 TAF12Q16514 161 aa13.45□□□□□ -0.26
PDPN-208ENST00000509009 ARHGAP15Q53QZ3 475 aa13.45□□□□□ -0.26
PDPN-208ENST00000509009 CNNM4Q6P4Q7 775 aa13.45□□□□□ -0.26
PDPN-208ENST00000509009 STXBP4Q6ZWJ1 553 aa13.45□□□□□ -0.26
PDPN-208ENST00000509009 EPM2AIP1Q7L775 607 aaPredicted RBP13.45□□□□□ -0.26
PDPN-208ENST00000509009 TMEM150AQ86TG1 271 aa13.45□□□□□ -0.26
PDPN-208ENST00000509009 TMEM86AQ8N2M4 240 aa13.45□□□□□ -0.26
PDPN-208ENST00000509009 IQUBQ8NA54 791 aa13.45□□□□□ -0.26
PDPN-208ENST00000509009 DHX58Q96C10 678 aa13.45□□□□□ -0.26
PDPN-208ENST00000509009 C7orf25Q9BPX7 421 aa13.45□□□□□ -0.26
PDPN-208ENST00000509009 CHRDQ9H2X0 955 aa13.45□□□□□ -0.26
PDPN-208ENST00000509009 INTS13Q9NVM9 706 aa13.45□□□□□ -0.26
PDPN-208ENST00000509009 OBP2AQ9NY56 170 aa13.45□□□□□ -0.26
PDPN-208ENST00000509009 ABI2Q9NYB9 513 aaPredicted RBP13.45□□□□□ -0.26
PDPN-208ENST00000509009 ITGA11Q9UKX5 1188 aa13.45□□□□□ -0.26
PDPN-208ENST00000509009 GABRDO14764 452 aa13.44□□□□□ -0.26
PDPN-208ENST00000509009 PRPF40AO75400 957 aaKnown RBP13.44□□□□□ -0.26
PDPN-208ENST00000509009 KRT19P08727 400 aa13.44□□□□□ -0.26
PDPN-208ENST00000509009 ZSCAN22P10073 491 aaPredicted RBP13.44□□□□□ -0.26
PDPN-208ENST00000509009 CHRNB1P11230 501 aa13.44□□□□□ -0.26
PDPN-208ENST00000509009 PDIA4P13667 645 aaKnown RBP13.44□□□□□ -0.26
PDPN-208ENST00000509009 CDC25CP30307 473 aa13.44□□□□□ -0.26
PDPN-208ENST00000509009 CYP4F8P98187 520 aa13.44□□□□□ -0.26
PDPN-208ENST00000509009 TSPY1Q01534 308 aa13.44□□□□□ -0.26
PDPN-208ENST00000509009 NFE2Q16621 373 aaPredicted RBP13.44□□□□□ -0.26
PDPN-208ENST00000509009 FOXD4L6Q3SYB3 417 aaPredicted RBP13.44□□□□□ -0.26
PDPN-208ENST00000509009 ARHGAP29Q52LW3 1261 aa13.44□□□□□ -0.26
PDPN-208ENST00000509009 TSSK4Q6SA08 328 aa13.44□□□□□ -0.26
PDPN-208ENST00000509009 FOXD4L3Q6VB84 417 aaPredicted RBP13.44□□□□□ -0.26
PDPN-208ENST00000509009 OSTM1Q86WC4 334 aa13.44□□□□□ -0.26
PDPN-208ENST00000509009 CBWD2Q8IUF1 395 aa13.44□□□□□ -0.26
PDPN-208ENST00000509009 ZBTB44Q8NCP5 570 aa13.44□□□□□ -0.26
PDPN-208ENST00000509009 OR5B17Q8NGF7 314 aa13.44□□□□□ -0.26
PDPN-208ENST00000509009 CSGALNACT1Q8TDX6 532 aa13.44□□□□□ -0.26
PDPN-208ENST00000509009 ATRIPQ8WXE1 791 aa13.44□□□□□ -0.26
PDPN-208ENST00000509009 PKMYT1Q99640 499 aa13.44□□□□□ -0.26
PDPN-208ENST00000509009 PI4K2AQ9BTU6 479 aa13.44□□□□□ -0.26
PDPN-208ENST00000509009 MTMR12Q9C0I1 747 aa13.44□□□□□ -0.26
PDPN-208ENST00000509009 C8orf33Q9H7E9 229 aaPredicted RBP13.44□□□□□ -0.26
PDPN-208ENST00000509009 ZSCAN32Q9NX65 697 aa13.44□□□□□ -0.26
PDPN-208ENST00000509009 DDX43Q9NXZ2 648 aaKnown RBP13.44□□□□□ -0.26
PDPN-208ENST00000509009 GTF3C4Q9UKN8 822 aa13.44□□□□□ -0.26
PDPN-208ENST00000509009 SNX9Q9Y5X1 595 aa13.44□□□□□ -0.26
PDPN-208ENST00000509009 MIA3Q5JRA6 1907 aa13.43□□□□□ -0.26
PDPN-208ENST00000509009 EIF3DO15371 548 aaKnown RBP eCLIP13.43□□□□□ -0.26
PDPN-208ENST00000509009 POLR2DO15514 142 aaKnown RBP13.43□□□□□ -0.26
PDPN-208ENST00000509009 TGFB1I1O43294 461 aa13.43□□□□□ -0.26
PDPN-208ENST00000509009 KINO60870 393 aaKnown RBP13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms