RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 RMDN3Q96TC7 470 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 PHACTR1Q9C0D0 580 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 KCNK12Q9HB15 430 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 LZTFL1Q9NQ48 299 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 CROTQ9UKG9 612 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 SLIT3O75094 1523 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 RRN3P2A6NIE6 340 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 C2CD4DB7Z1M9 353 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 ENC1O14682 589 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 ZNF862O60290 1169 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 MAN1A2O60476 641 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 ALDH1L1O75891 902 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 KRT76Q01546 638 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 HYAL1Q12794 435 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 STX1AQ16623 288 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 DGKKQ5KSL6 1271 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 SLC9C2Q5TAH2 1124 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 BTNL9Q6UXG8 535 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 ELOA2Q8IYF1 753 aaPredicted RBP5.4□□□□□ -1.54
USP54-216ENST00000498143 SYCE1Q8N0S2 351 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 ANKRD44Q8N8A2 993 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 CALML6Q8TD86 181 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 BCAS4Q8TDM0 211 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 EIF2AK1Q9BQI3 630 aaKnown RBP5.4□□□□□ -1.54
USP54-216ENST00000498143 CCDC8Q9H0W5 538 aaPredicted RBP5.4□□□□□ -1.54
USP54-216ENST00000498143 C10orf88Q9H8K7 445 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 PSTPIP2Q9H939 334 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 PARVAQ9NVD7 372 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 CTTNBP2NLQ9P2B4 639 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 BAIAP2L1Q9UHR4 511 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 IPO11Q9UI26 975 aaKnown RBP5.4□□□□□ -1.54
USP54-216ENST00000498143 AP1M2Q9Y6Q5 423 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 MTORP42345 2549 aa5.4□□□□□ -1.54
USP54-216ENST00000498143 NEURL1BA8MQ27 555 aa5.4□□□□□ -1.55
USP54-216ENST00000498143 F6X3S4 739 aa5.4□□□□□ -1.55
USP54-216ENST00000498143 SCAMP3O14828 347 aaKnown RBP5.4□□□□□ -1.55
USP54-216ENST00000498143 GUCA1CO95843 209 aa5.4□□□□□ -1.55
USP54-216ENST00000498143 CPB1P15086 417 aa5.4□□□□□ -1.55
USP54-216ENST00000498143 PXNP49023 591 aaPredicted RBP5.4□□□□□ -1.55
USP54-216ENST00000498143 PER3P56645 1201 aa5.4□□□□□ -1.55
USP54-216ENST00000498143 AMPD3Q01432 767 aa5.4□□□□□ -1.55
USP54-216ENST00000498143 TYRO3Q06418 890 aa5.4□□□□□ -1.55
USP54-216ENST00000498143 KCNH2Q12809 1159 aa5.4□□□□□ -1.55
USP54-216ENST00000498143 ADAM15Q13444 863 aa5.4□□□□□ -1.55
USP54-216ENST00000498143 DSG2Q14126 1118 aa5.4□□□□□ -1.55
USP54-216ENST00000498143 NFE2L1Q14494 772 aa5.4□□□□□ -1.55
USP54-216ENST00000498143 ZC3H12BQ5HYM0 836 aaKnown RBP5.4□□□□□ -1.55
USP54-216ENST00000498143 TMEM164Q5U3C3 297 aa5.4□□□□□ -1.55
USP54-216ENST00000498143 C4orf50Q6ZRC1 276 aa5.4□□□□□ -1.55
USP54-216ENST00000498143 TRIM69Q86WT6 500 aa5.4□□□□□ -1.55
USP54-216ENST00000498143 DHRS1Q96LJ7 313 aa5.4□□□□□ -1.55
USP54-216ENST00000498143 ACAP3Q96P50 834 aa5.4□□□□□ -1.55
USP54-216ENST00000498143 ADAM2Q99965 735 aa5.4□□□□□ -1.55
USP54-216ENST00000498143 KAT14Q9H8E8 782 aa5.4□□□□□ -1.55
USP54-216ENST00000498143 SLC38A10Q9HBR0 1119 aa5.4□□□□□ -1.55
USP54-216ENST00000498143 SH3GLB2Q9NR46 395 aa5.4□□□□□ -1.55
USP54-216ENST00000498143 PLAGL2Q9UPG8 496 aa5.4□□□□□ -1.55
USP54-216ENST00000498143 INVSQ9Y283 1065 aa5.4□□□□□ -1.55
USP54-216ENST00000498143 RAXQ9Y2V3 346 aa5.4□□□□□ -1.55
USP54-216ENST00000498143 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP5.4□□□□□ -1.55
USP54-216ENST00000498143 CCDC195A0A1B0GUA6 201 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 MCF2LO15068 1137 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 AHCYL1O43865 530 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 EPB41P11171 864 aaKnown RBP5.39□□□□□ -1.55
USP54-216ENST00000498143 ALOX15P16050 662 aaPredicted RBP5.39□□□□□ -1.55
USP54-216ENST00000498143 CDC27P30260 824 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 S100A5P33763 92 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 CHKAP35790 457 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 CCT5P48643 541 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 KRT83P78385 493 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 ROR2Q01974 943 aaKnown RBP5.39□□□□□ -1.55
USP54-216ENST00000498143 ZNF211Q13398 564 aaPredicted RBP5.39□□□□□ -1.55
USP54-216ENST00000498143 TUBB2AQ13885 445 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 LONRF1Q17RB8 773 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 DUSP28Q4G0W2 176 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 GLE1Q53GS7 698 aaKnown RBP5.39□□□□□ -1.55
USP54-216ENST00000498143 DCAF6Q58WW2 860 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 TSHZ3Q63HK5 1081 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 KIAA1324Q6UXG2 1013 aaKnown RBP5.39□□□□□ -1.55
USP54-216ENST00000498143 CNNM3Q8NE01 707 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 TOR1AIP2Q8NFQ8 470 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 TTC8Q8TAM2 541 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 KHSRPQ92945 711 aaKnown RBP eCLIP5.39□□□□□ -1.55
USP54-216ENST00000498143 CCDC77Q9BR77 488 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 CENPKQ9BS16 269 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 TUBB2BQ9BVA1 445 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 AMNQ9BXJ7 453 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 ST7Q9NRC1 585 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 DCAF16Q9NXF7 216 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 COX16Q9P0S2 106 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 FARP1Q9Y4F1 1045 aaPredicted RBP5.39□□□□□ -1.55
USP54-216ENST00000498143 SVILO95425 2214 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 F8VZ95 297 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 WISP1O95388 367 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 RASA1P20936 1047 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 CTGFP29279 349 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 CCND2P30279 289 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 TRIM14Q14142 442 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 BEND3Q5T5X7 828 aa5.39□□□□□ -1.55
USP54-216ENST00000498143 ITPRIPL1Q6GPH6 555 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms