RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 SLC5A4Q9NY91 659 aa11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 CHMP2BQ9UQN3 213 aa11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 SH3BP1Q9Y3L3 701 aa11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 SHANK3Q9BYB0 1731 aa11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 GYG2O15488 501 aa11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 SERPINB3P29508 390 aa11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 AMPD2Q01433 879 aa11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 FAM102AQ5T9C2 384 aaPredicted RBP11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 EEF1DP3Q658K8 133 aa11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 GRAMD4Q6IC98 578 aa11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 LNX1Q8TBB1 728 aaPredicted RBP11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 RPS6KC1Q96S38 1066 aa11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 RMI1Q9H9A7 625 aa11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 SPC25Q9HBM1 224 aa11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 ERAP1Q9NZ08 941 aa11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 ANGPTL2Q9UKU9 493 aa11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 TIMM13Q9Y5L4 95 aaPredicted RBP11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 PFASO15067 1338 aa11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 KIAA0100Q14667 2235 aaKnown RBP11.31□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 PIAS1O75925 651 aa11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 DCTN3O75935 186 aa11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 CYP2C9P11712 490 aa11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 YBX3P16989 372 aaKnown RBP eCLIP11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 RFC5P40937 340 aa11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 FNTAP49354 379 aa11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 BPIFB4P59827 614 aa11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 CACNB2Q08289 660 aaPredicted RBP11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 HGSNATQ68CP4 663 aa11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 METTL7BQ6UX53 244 aa11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 RHOT2Q8IXI1 618 aa11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 OLFM3Q96PB7 478 aa11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 RNPEPQ9H4A4 650 aa11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 UBE4BO95155 1302 aa11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 LDHAP00338 332 aaKnown RBP11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 ZNF280AP59817 542 aaPredicted RBP11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 XRCC4Q13426 336 aa11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 IRF2BP2Q7Z5L9 587 aa11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 KCTD6Q8NC69 237 aa11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 FAM167AQ96KS9 214 aa11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 OSBPL7Q9BZF2 842 aa11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 KCND2Q9NZV8 630 aa11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 MYH1P12882 1939 aa11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 MYH10P35580 1976 aa11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 UMODL1Q5DID0 1318 aa11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 ASB14A6NK59 587 aa11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 MAFGO15525 162 aa11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 DHX15O43143 795 aaKnown RBP11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 ARIH2O95376 493 aa11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 LCP1P13796 627 aa11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 ATF2P15336 505 aa11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 CDR2Q01850 454 aa11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 USP4Q13107 963 aa11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 ATP13A4Q4VNC1 1196 aa11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 FIGNQ5HY92 759 aa11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 CWF19L1Q69YN2 538 aaKnown RBP11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 CREG2Q8IUH2 290 aa11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 NETO2Q8NC67 525 aa11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 INPP4AQ96PE3 977 aaPredicted RBP11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 MKNK1Q9BUB5 465 aa11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 AFG3L2Q9Y4W6 797 aa11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 ADGRA3Q8IWK6 1321 aa11.3□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 CEP290O15078 2479 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 SOWAHBA6NEL2 793 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 EXTL3O43909 919 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 LGR5O75473 907 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 ECEL1O95672 775 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 ZCCHC18P0CG32 403 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 ESRRAP11474 423 aaPredicted RBP11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 BRAFP15056 766 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 KCNA2P16389 499 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 CAPSQ13938 189 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 ITIH4Q14624 930 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 SLC44A4Q53GD3 710 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 RFX8Q6ZV50 586 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 AGGF1Q8N302 714 aaeCLIP11.29□□□□□ -0.66e-11■■□□□ 13.8
MSH5-SAPCD1-207ENST00000493662 TTC1Q99614 292 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 EDEM3Q9BZQ6 932 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 ISCUQ9H1K1 167 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 MAD1L1Q9Y6D9 718 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 A8MXQ7 604 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 PYGLP06737 847 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 KIAA0319LQ8IZA0 1049 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 CCNYQ8ND76 341 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 SMC1BQ8NDV3 1235 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 UPF1Q92900 1129 aaKnown RBP eCLIP11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 ERP27Q96DN0 273 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 C9orf72Q96LT7 481 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 GORASP1Q9BQQ3 440 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 NMRK2Q9NPI5 230 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 XPNPEP1Q9NQW7 623 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 SAE1Q9UBE0 346 aaPredicted RBP11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 GRIN2DO15399 1336 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 CHD4Q14839 1912 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 WDR91A4D1P6 747 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 CASQ2O14958 399 aaPredicted RBP11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 RTN2O75298 545 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 GH1P01241 217 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 GSTA2P09210 222 aa11.29□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 FAM200BP0CF97 657 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms