RNA–Protein interactions for RNA: ENST00000492606.1

UBR4-215, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 3

Gene UBR4, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-215	ENST00000492606	AGO3	Q9H9G7	860 aa	Known RBP	4.7	□□□□□ -1.66
UBR4-215	ENST00000492606	C1GALT1	Q9NS00	363 aa		4.7	□□□□□ -1.66
UBR4-215	ENST00000492606	BABAM1	Q9NWV8	329 aa		4.7	□□□□□ -1.66
UBR4-215	ENST00000492606	APEX2	Q9UBZ4	518 aa		4.7	□□□□□ -1.66
UBR4-215	ENST00000492606	PCOLCE2	Q9UKZ9	415 aa		4.7	□□□□□ -1.66
UBR4-215	ENST00000492606	TMX2	Q9Y320	296 aa		4.7	□□□□□ -1.66
UBR4-215	ENST00000492606	IRAK3	Q9Y616	596 aa		4.7	□□□□□ -1.66
UBR4-215	ENST00000492606	RYR1	P21817	5038 aa		4.7	□□□□□ -1.66
UBR4-215	ENST00000492606	UBE4B	O95155	1302 aa		4.7	□□□□□ -1.66
UBR4-215	ENST00000492606	KIR2DP1	A0A0G2JNF4	349 aa	Predicted RBP	4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	PPP1R12A	O14974	1030 aa	Predicted RBP	4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	NKRF	O15226	690 aa	Known RBP eCLIP	4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	BRINP1	O60477	761 aa		4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	CDC45	O75419	566 aa		4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	F2	P00734	622 aa		4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	TP53	P04637	393 aa	Predicted RBP	4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	EPHX1	P07099	455 aa		4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	HOXB7	P09629	217 aa		4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	IFIT1	P09914	478 aa	Known RBP	4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	SCG2	P13521	617 aa		4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	CAST	P20810	708 aa	Known RBP	4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	CCNE1	P24864	410 aa		4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	HOXC8	P31273	242 aa		4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	GBP1	P32455	592 aa		4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	DHPS	P49366	369 aa	Predicted RBP	4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	GYS2	P54840	703 aa		4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	NTHL1	P78549	312 aa		4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	KRT17	Q04695	432 aa		4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	ARHGAP1	Q07960	439 aa		4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	SSRP1	Q08945	709 aa	Known RBP	4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	PPP2R5B	Q15173	497 aa		4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	ANKRD39	Q53RE8	183 aa		4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	DCAF6	Q58WW2	860 aa		4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	FAM83B	Q5T0W9	1011 aa		4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	BROX	Q5VW32	411 aa		4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	DUSP27	Q5VZP5	1158 aa		4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	C16orf86	Q6ZW13	317 aa		4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	MTSS1L	Q765P7	747 aa		4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	ARMCX6	Q7L4S7	300 aa		4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	TAOK1	Q7L7X3	1001 aa		4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	PTRH1	Q86Y79	214 aa	Known RBP	4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	ZNF280B	Q86YH2	543 aa		4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	PHACTR4	Q8IZ21	702 aa		4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	VPS52	Q8N1B4	723 aa		4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	LRRC47	Q8N1G4	583 aa	Known RBP	4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	SLC39A11	Q8N1S5	342 aa		4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	KCT2	Q8NC54	265 aa		4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	APPBP2	Q92624	585 aa		4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	ATP6V0A1	Q93050	837 aa		4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	ZNF512B	Q96KM6	892 aa	Predicted RBP	4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	EXOC2	Q96KP1	924 aa		4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	UNK	Q9C0B0	810 aa	Known RBP	4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	CCDC8	Q9H0W5	538 aa	Predicted RBP	4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	AKTIP	Q9H8T0	292 aa		4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	GPRC5C	Q9NQ84	441 aa		4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	MAN1C1	Q9NR34	630 aa		4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	ARHGEF4	Q9NR80	690 aa		4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	DONSON	Q9NYP3	566 aa		4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	SPG21	Q9NZD8	308 aa		4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	FBXO40	Q9UH90	709 aa		4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	CDH7	Q9ULB5	785 aa		4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	CEP131	Q9UPN4	1083 aa		4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	ZNF281	Q9Y2X9	895 aa		4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	ZFP37	Q9Y6Q3	630 aa	Predicted RBP	4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	ATXN2	Q99700	1313 aa	Known RBP	4.69	□□□□□ -1.66
UBR4-215	ENST00000492606	ZFC3H1	O60293	1989 aa	Known RBP	4.68	□□□□□ -1.66
UBR4-215	ENST00000492606		A0A087X0B3	334 aa		4.68	□□□□□ -1.66
UBR4-215	ENST00000492606	NT5C1B-RDH14	C9J2C7	533 aa		4.68	□□□□□ -1.66
UBR4-215	ENST00000492606		K7ENP7	123 aa		4.68	□□□□□ -1.66
UBR4-215	ENST00000492606	TBX1	O43435	398 aa		4.68	□□□□□ -1.66
UBR4-215	ENST00000492606	RNGTT	O60942	597 aa	Known RBP	4.68	□□□□□ -1.66
UBR4-215	ENST00000492606	CAND2	O75155	1236 aa		4.68	□□□□□ -1.66
UBR4-215	ENST00000492606	PAPLN	O95428	1278 aa		4.68	□□□□□ -1.66
UBR4-215	ENST00000492606	NFIC	P08651	508 aa		4.68	□□□□□ -1.66
UBR4-215	ENST00000492606	FAM87A	P0C7U9	286 aa		4.68	□□□□□ -1.66
UBR4-215	ENST00000492606	TXN	P10599	105 aa	Known RBP	4.68	□□□□□ -1.66
UBR4-215	ENST00000492606	CD52	P31358	61 aa		4.68	□□□□□ -1.66
UBR4-215	ENST00000492606	PHKA1	P46020	1223 aa		4.68	□□□□□ -1.66
UBR4-215	ENST00000492606	UQCRFS1	P47985	274 aa		4.68	□□□□□ -1.66
UBR4-215	ENST00000492606	ATXN3	P54252	364 aa	Predicted RBP	4.68	□□□□□ -1.66
UBR4-215	ENST00000492606	HNRNPU	Q00839	825 aa	Known RBP eCLIP	4.68	□□□□□ -1.66
UBR4-215	ENST00000492606	MGAT3	Q09327	533 aa		4.68	□□□□□ -1.66
UBR4-215	ENST00000492606	NEXN	Q0ZGT2	675 aa		4.68	□□□□□ -1.66
UBR4-215	ENST00000492606	LONRF2	Q1L5Z9	754 aa		4.68	□□□□□ -1.66
UBR4-215	ENST00000492606	SGO2	Q562F6	1265 aa		4.68	□□□□□ -1.66
UBR4-215	ENST00000492606	FBXO47	Q5MNV8	452 aa		4.68	□□□□□ -1.66
UBR4-215	ENST00000492606	YOD1	Q5VVQ6	348 aa	Predicted RBP	4.68	□□□□□ -1.66
UBR4-215	ENST00000492606	INO80C	Q6PI98	192 aa	Predicted RBP	4.68	□□□□□ -1.66
UBR4-215	ENST00000492606	DHRS13	Q6UX07	377 aa		4.68	□□□□□ -1.66
UBR4-215	ENST00000492606	CYP26C1	Q6V0L0	522 aa		4.68	□□□□□ -1.66
UBR4-215	ENST00000492606	HOMER1	Q86YM7	354 aa		4.68	□□□□□ -1.66
UBR4-215	ENST00000492606	MFSD2A	Q8NA29	543 aa		4.68	□□□□□ -1.66
UBR4-215	ENST00000492606	DAGLB	Q8NCG7	672 aa		4.68	□□□□□ -1.66
UBR4-215	ENST00000492606	FBLIM1	Q8WUP2	373 aa		4.68	□□□□□ -1.66
UBR4-215	ENST00000492606	WFDC12	Q8WWY7	111 aa		4.68	□□□□□ -1.66
UBR4-215	ENST00000492606	DNASE1L2	Q92874	299 aa		4.68	□□□□□ -1.66
UBR4-215	ENST00000492606	FGF13	Q92913	245 aa		4.68	□□□□□ -1.66
UBR4-215	ENST00000492606	NSUN4	Q96CB9	384 aa	Known RBP	4.68	□□□□□ -1.66
UBR4-215	ENST00000492606	MEGF10	Q96KG7	1140 aa		4.68	□□□□□ -1.66
UBR4-215	ENST00000492606	DHRS1	Q96LJ7	313 aa		4.68	□□□□□ -1.66

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