RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 WEE1P30291 646 aa13.39□□□□□ -0.27
CPSF3-204ENST00000489403 CDC25CP30307 473 aa13.39□□□□□ -0.27
CPSF3-204ENST00000489403 ADSSP30520 456 aa13.39□□□□□ -0.27
CPSF3-204ENST00000489403 FNTBP49356 437 aa13.39□□□□□ -0.27
CPSF3-204ENST00000489403 WNT7BP56706 349 aa13.39□□□□□ -0.27
CPSF3-204ENST00000489403 ARHGAP8P85298 464 aa13.39□□□□□ -0.27
CPSF3-204ENST00000489403 TNK2Q07912 1038 aa13.39□□□□□ -0.27
CPSF3-204ENST00000489403 SPEM2Q0P670 501 aa13.39□□□□□ -0.27
CPSF3-204ENST00000489403 PON2Q15165 354 aa13.39□□□□□ -0.27
CPSF3-204ENST00000489403 WSCD1Q658N2 575 aa13.39□□□□□ -0.27
CPSF3-204ENST00000489403 LAIR1Q6GTX8 287 aa13.39□□□□□ -0.27
CPSF3-204ENST00000489403 PRR23BQ6ZRT6 265 aa13.39□□□□□ -0.27
CPSF3-204ENST00000489403 DYMQ7RTS9 669 aa13.39□□□□□ -0.27
CPSF3-204ENST00000489403 ZNF720Q7Z2F6 126 aa13.39□□□□□ -0.27
CPSF3-204ENST00000489403 METTL23Q86XA0 190 aa13.39□□□□□ -0.27
CPSF3-204ENST00000489403 THEM5Q8N1Q8 247 aa13.39□□□□□ -0.27
CPSF3-204ENST00000489403 KRI1Q8N9T8 703 aaKnown RBP13.39□□□□□ -0.27
CPSF3-204ENST00000489403 SPPL2BQ8TCT7 592 aa13.39□□□□□ -0.27
CPSF3-204ENST00000489403 GIPC2Q8TF65 315 aa13.39□□□□□ -0.27
CPSF3-204ENST00000489403 C2orf15Q8WU43 125 aaKnown RBP13.39□□□□□ -0.27
CPSF3-204ENST00000489403 POMGNT1Q8WZA1 660 aa13.39□□□□□ -0.27
CPSF3-204ENST00000489403 EPSTI1Q96J88 318 aa13.39□□□□□ -0.27
CPSF3-204ENST00000489403 SMG9Q9H0W8 520 aaKnown RBP13.39□□□□□ -0.27
CPSF3-204ENST00000489403 C2orf42Q9NWW7 574 aa13.39□□□□□ -0.27
CPSF3-204ENST00000489403 CDV3Q9UKY7 258 aaKnown RBP13.39□□□□□ -0.27
CPSF3-204ENST00000489403 CEP250Q9BV73 2442 aa13.38□□□□□ -0.27
CPSF3-204ENST00000489403 HRO43593 1189 aa13.38□□□□□ -0.27
CPSF3-204ENST00000489403 HAPLN1P10915 354 aaPredicted RBP13.38□□□□□ -0.27
CPSF3-204ENST00000489403 HOXC13P31276 330 aa13.38□□□□□ -0.27
CPSF3-204ENST00000489403 POU5F1Q01860 360 aaKnown RBP13.38□□□□□ -0.27
CPSF3-204ENST00000489403 SMARCB1Q12824 385 aa13.38□□□□□ -0.27
CPSF3-204ENST00000489403 SRSF5Q13243 272 aaKnown RBP13.38□□□□□ -0.27
CPSF3-204ENST00000489403 CCINQ13939 588 aa13.38□□□□□ -0.27
CPSF3-204ENST00000489403 SV2CQ496J9 727 aa13.38□□□□□ -0.27
CPSF3-204ENST00000489403 DGKKQ5KSL6 1271 aa13.38□□□□□ -0.27
CPSF3-204ENST00000489403 HVCN1Q96D96 273 aa13.38□□□□□ -0.27
CPSF3-204ENST00000489403 GCNAQ96QF7 691 aa13.38□□□□□ -0.27
CPSF3-204ENST00000489403 STRA6Q9BX79 667 aa13.38□□□□□ -0.27
CPSF3-204ENST00000489403 SLC46A2Q9BY10 475 aa13.38□□□□□ -0.27
CPSF3-204ENST00000489403 TMLHEQ9NVH6 421 aa13.38□□□□□ -0.27
CPSF3-204ENST00000489403 ABI2Q9NYB9 513 aaPredicted RBP13.38□□□□□ -0.27
CPSF3-204ENST00000489403 CLIC4Q9Y696 253 aa13.38□□□□□ -0.27
CPSF3-204ENST00000489403 KPNA7A9QM74 516 aa13.37□□□□□ -0.27
CPSF3-204ENST00000489403 IL18RAPO95256 599 aa13.37□□□□□ -0.27
CPSF3-204ENST00000489403 RETP07949 1114 aa13.37□□□□□ -0.27
CPSF3-204ENST00000489403 GPR15P49685 360 aa13.37□□□□□ -0.27
CPSF3-204ENST00000489403 PLCB2Q00722 1185 aa13.37□□□□□ -0.27
CPSF3-204ENST00000489403 KCNA1Q09470 495 aa13.37□□□□□ -0.27
CPSF3-204ENST00000489403 SIM2Q14190 667 aaPredicted RBP13.37□□□□□ -0.27
CPSF3-204ENST00000489403 PTPAQ15257 358 aa13.37□□□□□ -0.27
CPSF3-204ENST00000489403 TMEM150AQ86TG1 271 aa13.37□□□□□ -0.27
CPSF3-204ENST00000489403 LONP2Q86WA8 852 aa13.37□□□□□ -0.27
CPSF3-204ENST00000489403 NT5DC4Q86YG4 428 aa13.37□□□□□ -0.27
CPSF3-204ENST00000489403 CMTM8Q8IZV2 173 aa13.37□□□□□ -0.27
CPSF3-204ENST00000489403 STKLD1Q8NE28 680 aa13.37□□□□□ -0.27
CPSF3-204ENST00000489403 ZSWIM2Q8NEG5 633 aa13.37□□□□□ -0.27
CPSF3-204ENST00000489403 DNAJC19Q96DA6 116 aa13.37□□□□□ -0.27
CPSF3-204ENST00000489403 ZNF560Q96MR9 790 aa13.37□□□□□ -0.27
CPSF3-204ENST00000489403 SEL1LQ9UBV2 794 aa13.37□□□□□ -0.27
CPSF3-204ENST00000489403 STK17AQ9UEE5 414 aa13.37□□□□□ -0.27
CPSF3-204ENST00000489403 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.37□□□□□ -0.27
CPSF3-204ENST00000489403 ZNF638Q14966 1978 aaKnown RBP13.36□□□□□ -0.27
CPSF3-204ENST00000489403 VPS37CA5D8V6 355 aaPredicted RBP13.36□□□□□ -0.27
CPSF3-204ENST00000489403 MYMKA6NI61 221 aa13.36□□□□□ -0.27
CPSF3-204ENST00000489403 F11P03951 625 aa13.36□□□□□ -0.27
CPSF3-204ENST00000489403 HMGA1P17096 107 aaKnown RBP13.36□□□□□ -0.27
CPSF3-204ENST00000489403 CNR2P34972 360 aa13.36□□□□□ -0.27
CPSF3-204ENST00000489403 POSTNQ15063 836 aa13.36□□□□□ -0.27
CPSF3-204ENST00000489403 TAF12Q16514 161 aa13.36□□□□□ -0.27
CPSF3-204ENST00000489403 ITPRIPL2Q3MIP1 535 aa13.36□□□□□ -0.27
CPSF3-204ENST00000489403 L1TD1Q5T7N2 865 aaKnown RBP13.36□□□□□ -0.27
CPSF3-204ENST00000489403 HEATR6Q6AI08 1181 aaKnown RBP13.36□□□□□ -0.27
CPSF3-204ENST00000489403 SCARA3Q6AZY7 606 aa13.36□□□□□ -0.27
CPSF3-204ENST00000489403 BRSK2Q8IWQ3 736 aa13.36□□□□□ -0.27
CPSF3-204ENST00000489403 DCP1BQ8IZD4 617 aaKnown RBP13.36□□□□□ -0.27
CPSF3-204ENST00000489403 C1orf127Q8N9H9 656 aa13.36□□□□□ -0.27
CPSF3-204ENST00000489403 RIN3Q8TB24 985 aa13.36□□□□□ -0.27
CPSF3-204ENST00000489403 SAAL1Q96ER3 474 aa13.36□□□□□ -0.27
CPSF3-204ENST00000489403 FAM213AQ9BRX8 229 aa13.36□□□□□ -0.27
CPSF3-204ENST00000489403 RTKNQ9BST9 563 aa13.36□□□□□ -0.27
CPSF3-204ENST00000489403 MRPL44Q9H9J2 332 aaKnown RBP13.36□□□□□ -0.27
CPSF3-204ENST00000489403 UPF2Q9HAU5 1272 aaKnown RBP13.36□□□□□ -0.27
CPSF3-204ENST00000489403 HPS4Q9NQG7 708 aa13.36□□□□□ -0.27
CPSF3-204ENST00000489403 THG1LQ9NWX6 298 aaKnown RBP13.36□□□□□ -0.27
CPSF3-204ENST00000489403 TBC1D7Q9P0N9 293 aa13.36□□□□□ -0.27
CPSF3-204ENST00000489403 FBXO2Q9UK22 296 aaPredicted RBP13.36□□□□□ -0.27
CPSF3-204ENST00000489403 L1RE1Q9UN81 338 aa13.36□□□□□ -0.27
CPSF3-204ENST00000489403 CCL26Q9Y258 94 aa13.36□□□□□ -0.27
CPSF3-204ENST00000489403 PCDHB5Q9Y5E4 795 aa13.36□□□□□ -0.27
CPSF3-204ENST00000489403 DCDC2BA2VCK2 349 aa13.35□□□□□ -0.27
CPSF3-204ENST00000489403 LRP3O75074 770 aa13.35□□□□□ -0.27
CPSF3-204ENST00000489403 TADA3O75528 432 aa13.35□□□□□ -0.27
CPSF3-204ENST00000489403 GCNT3O95395 438 aa13.35□□□□□ -0.27
CPSF3-204ENST00000489403 ITGB3P05106 788 aa13.35□□□□□ -0.27
CPSF3-204ENST00000489403 POLR2BP30876 1174 aaKnown RBP13.35□□□□□ -0.27
CPSF3-204ENST00000489403 AVPR1AP37288 418 aa13.35□□□□□ -0.27
CPSF3-204ENST00000489403 PNPLA4P41247 253 aa13.35□□□□□ -0.27
CPSF3-204ENST00000489403 CASP5P51878 434 aa13.35□□□□□ -0.27
CPSF3-204ENST00000489403 NLRP12P59046 1061 aa13.35□□□□□ -0.27
CPSF3-204ENST00000489403 TFAMQ00059 246 aaKnown RBP13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms