RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 PQBP1O60828 265 aaKnown RBP6.6□□□□□ -1.35
USP48-209ENST00000487880 VPS4BO75351 444 aa6.6□□□□□ -1.35
USP48-209ENST00000487880 RPS7P62081 194 aaKnown RBP6.6□□□□□ -1.35
USP48-209ENST00000487880 GUCY1B3Q02153 619 aa6.6□□□□□ -1.35
USP48-209ENST00000487880 SLC13A2Q13183 592 aa6.6□□□□□ -1.35
USP48-209ENST00000487880 CTBP1Q13363 440 aa6.6□□□□□ -1.35
USP48-209ENST00000487880 TP53BP2Q13625 1128 aa6.6□□□□□ -1.35
USP48-209ENST00000487880 HLXQ14774 488 aaPredicted RBP6.6□□□□□ -1.35
USP48-209ENST00000487880 LMBRD2Q68DH5 695 aaPredicted RBP6.6□□□□□ -1.35
USP48-209ENST00000487880 C11orf96Q7Z7L8 435 aa6.6□□□□□ -1.35
USP48-209ENST00000487880 SESTD1Q86VW0 696 aa6.6□□□□□ -1.35
USP48-209ENST00000487880 ADGRG5Q8IZF4 528 aa6.6□□□□□ -1.35
USP48-209ENST00000487880 DNAJC5GQ8N7S2 189 aa6.6□□□□□ -1.35
USP48-209ENST00000487880 NAA15Q9BXJ9 866 aaKnown RBP6.6□□□□□ -1.35
USP48-209ENST00000487880 ZNF518BQ9C0D4 1074 aa6.6□□□□□ -1.35
USP48-209ENST00000487880 SMOC2Q9H3U7 446 aa6.6□□□□□ -1.35
USP48-209ENST00000487880 ZNF287Q9HBT7 754 aa6.6□□□□□ -1.35
USP48-209ENST00000487880 XPR1Q9UBH6 696 aa6.6□□□□□ -1.35
USP48-209ENST00000487880 RGS17Q9UGC6 210 aaPredicted RBP6.6□□□□□ -1.35
USP48-209ENST00000487880 OGDHLQ9ULD0 1010 aa6.6□□□□□ -1.35
USP48-209ENST00000487880 SOAT2O75908 522 aa6.59□□□□□ -1.35
USP48-209ENST00000487880 FOSP01100 380 aaPredicted RBP6.59□□□□□ -1.35
USP48-209ENST00000487880 PIK3CBP42338 1070 aa6.59□□□□□ -1.35
USP48-209ENST00000487880 WNT3P56703 355 aa6.59□□□□□ -1.35
USP48-209ENST00000487880 PUM1Q14671 1186 aaKnown RBP eCLIP6.59□□□□□ -1.35
USP48-209ENST00000487880 LONRF3Q496Y0 759 aa6.59□□□□□ -1.35
USP48-209ENST00000487880 AMOTQ4VCS5 1084 aa6.59□□□□□ -1.35
USP48-209ENST00000487880 PROKR1Q8TCW9 393 aa6.59□□□□□ -1.35
USP48-209ENST00000487880 SLC46A1Q96NT5 459 aa6.59□□□□□ -1.35
USP48-209ENST00000487880 MMRN2Q9H8L6 949 aa6.59□□□□□ -1.35
USP48-209ENST00000487880 COL20A1Q9P218 1284 aa6.59□□□□□ -1.35
USP48-209ENST00000487880 TMX2Q9Y320 296 aa6.59□□□□□ -1.35
USP48-209ENST00000487880 REXO2Q9Y3B8 237 aaKnown RBP6.59□□□□□ -1.35
USP48-209ENST00000487880 NPIPB8E9PQR5 432 aa6.58□□□□□ -1.36
USP48-209ENST00000487880 FOXN3O00409 490 aaPredicted RBP6.58□□□□□ -1.36
USP48-209ENST00000487880 TOR1BO14657 336 aa6.58□□□□□ -1.36
USP48-209ENST00000487880 TBC1D4O60343 1298 aa6.58□□□□□ -1.36
USP48-209ENST00000487880 MAP4K4O95819 1239 aaPredicted RBP6.58□□□□□ -1.36
USP48-209ENST00000487880 CHRM3P20309 590 aa6.58□□□□□ -1.36
USP48-209ENST00000487880 TM4SF4P48230 202 aa6.58□□□□□ -1.36
USP48-209ENST00000487880 GCLCP48506 637 aaPredicted RBP6.58□□□□□ -1.36
USP48-209ENST00000487880 RAB32Q13637 225 aa6.58□□□□□ -1.36
USP48-209ENST00000487880 CD300EQ496F6 205 aaPredicted RBP6.58□□□□□ -1.36
USP48-209ENST00000487880 KCNV1Q6PIU1 500 aa6.58□□□□□ -1.36
USP48-209ENST00000487880 SLC30A10Q6XR72 485 aa6.58□□□□□ -1.36
USP48-209ENST00000487880 MICALCLQ6ZW33 695 aa6.58□□□□□ -1.36
USP48-209ENST00000487880 GPR149Q86SP6 731 aa6.58□□□□□ -1.36
USP48-209ENST00000487880 GGNQ86UU5 652 aa6.58□□□□□ -1.36
USP48-209ENST00000487880 COLGALT2Q8IYK4 626 aa6.58□□□□□ -1.36
USP48-209ENST00000487880 Q8N1X5 172 aa6.58□□□□□ -1.36
USP48-209ENST00000487880 SLC15A4Q8N697 577 aa6.58□□□□□ -1.36
USP48-209ENST00000487880 ASB10Q8WXI3 467 aa6.58□□□□□ -1.36
USP48-209ENST00000487880 TMEM125Q96AQ2 219 aa6.58□□□□□ -1.36
USP48-209ENST00000487880 MESP1Q9BRJ9 268 aa6.58□□□□□ -1.36
USP48-209ENST00000487880 ZNF341Q9BYN7 854 aa6.58□□□□□ -1.36
USP48-209ENST00000487880 ZNF700Q9H0M5 742 aa6.58□□□□□ -1.36
USP48-209ENST00000487880 SERHL2Q9H4I8 314 aa6.58□□□□□ -1.36
USP48-209ENST00000487880 CHST12Q9NRB3 414 aa6.58□□□□□ -1.36
USP48-209ENST00000487880 ANKFY1Q9P2R3 1169 aa6.58□□□□□ -1.36
USP48-209ENST00000487880 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.58□□□□□ -1.36
USP48-209ENST00000487880 RAD54BQ9Y620 910 aa6.58□□□□□ -1.36
USP48-209ENST00000487880 PIPSLA2A3N6 862 aa6.57□□□□□ -1.36
USP48-209ENST00000487880 ZNF202O95125 648 aa6.57□□□□□ -1.36
USP48-209ENST00000487880 ATXN1LP0C7T5 689 aaKnown RBP6.57□□□□□ -1.36
USP48-209ENST00000487880 EGR2P11161 476 aaPredicted RBP6.57□□□□□ -1.36
USP48-209ENST00000487880 CYP2C9P11712 490 aa6.57□□□□□ -1.36
USP48-209ENST00000487880 MAKP20794 623 aa6.57□□□□□ -1.36
USP48-209ENST00000487880 TACR2P21452 398 aa6.57□□□□□ -1.36
USP48-209ENST00000487880 NPTX2P47972 431 aa6.57□□□□□ -1.36
USP48-209ENST00000487880 CASP5P51878 434 aa6.57□□□□□ -1.36
USP48-209ENST00000487880 ZNF134P52741 427 aa6.57□□□□□ -1.36
USP48-209ENST00000487880 IQCB1Q15051 598 aa6.57□□□□□ -1.36
USP48-209ENST00000487880 SLC44A4Q53GD3 710 aa6.57□□□□□ -1.36
USP48-209ENST00000487880 C3orf38Q5JPI3 329 aa6.57□□□□□ -1.36
USP48-209ENST00000487880 LY6G5CQ5SRR4 150 aa6.57□□□□□ -1.36
USP48-209ENST00000487880 GAS2L3Q86XJ1 694 aa6.57□□□□□ -1.36
USP48-209ENST00000487880 FAM9AQ8IZU1 332 aaPredicted RBP6.57□□□□□ -1.36
USP48-209ENST00000487880 OR56A3Q8NH54 315 aa6.57□□□□□ -1.36
USP48-209ENST00000487880 SVIPQ8NHG7 77 aa6.57□□□□□ -1.36
USP48-209ENST00000487880 SNX19Q92543 992 aa6.57□□□□□ -1.36
USP48-209ENST00000487880 MOGAT1Q96PD6 335 aa6.57□□□□□ -1.36
USP48-209ENST00000487880 STRBPQ96SI9 672 aaKnown RBP6.57□□□□□ -1.36
USP48-209ENST00000487880 OSBPL9Q96SU4 736 aa6.57□□□□□ -1.36
USP48-209ENST00000487880 UNKQ9C0B0 810 aaKnown RBP6.57□□□□□ -1.36
USP48-209ENST00000487880 A1CFQ9NQ94 594 aaKnown RBP6.57□□□□□ -1.36
USP48-209ENST00000487880 SACM1LQ9NTJ5 587 aa6.57□□□□□ -1.36
USP48-209ENST00000487880 INTS13Q9NVM9 706 aa6.57□□□□□ -1.36
USP48-209ENST00000487880 TRGV11A0A075B6L2 103 aa6.56□□□□□ -1.36
USP48-209ENST00000487880 MBD3L4A6NDZ8 208 aaPredicted RBP6.56□□□□□ -1.36
USP48-209ENST00000487880 MBD3L3A6NE82 208 aaPredicted RBP6.56□□□□□ -1.36
USP48-209ENST00000487880 RHPN2P1A8MT19 583 aa6.56□□□□□ -1.36
USP48-209ENST00000487880 TMEM233B4DJY2 109 aa6.56□□□□□ -1.36
USP48-209ENST00000487880 F8W8V4 182 aa6.56□□□□□ -1.36
USP48-209ENST00000487880 MYO1CO00159 1063 aa6.56□□□□□ -1.36
USP48-209ENST00000487880 PLIN1O60240 522 aa6.56□□□□□ -1.36
USP48-209ENST00000487880 NBPF7P0C2Y1 421 aaPredicted RBP6.56□□□□□ -1.36
USP48-209ENST00000487880 GATA3P23771 443 aa6.56□□□□□ -1.36
USP48-209ENST00000487880 ZEB1P37275 1124 aaPredicted RBP6.56□□□□□ -1.36
USP48-209ENST00000487880 NDUFV1P49821 464 aa6.56□□□□□ -1.36
USP48-209ENST00000487880 LOXL3P58215 753 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms