RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 RSPO2Q6UXX9 243 aaPredicted RBP18.3■□□□□ 0.52
VIM-205ENST00000485947 USP37Q86T82 979 aa18.3■□□□□ 0.52
VIM-205ENST00000485947 CREBRFQ8IUR6 639 aa18.3■□□□□ 0.52
VIM-205ENST00000485947 TRIM59Q8IWR1 403 aa18.3■□□□□ 0.52
VIM-205ENST00000485947 FAM186BQ8IYM0 893 aa18.3■□□□□ 0.52
VIM-205ENST00000485947 EEF2KMTQ96G04 330 aa18.3■□□□□ 0.52
VIM-205ENST00000485947 NAP1L5Q96NT1 182 aaPredicted RBP18.3■□□□□ 0.52
VIM-205ENST00000485947 CBWD1Q9BRT8 395 aa18.3■□□□□ 0.52
VIM-205ENST00000485947 ARMCX3Q9UH62 379 aaPredicted RBP18.3■□□□□ 0.52
VIM-205ENST00000485947 AFF4Q9UHB7 1163 aaKnown RBP18.3■□□□□ 0.52
VIM-205ENST00000485947 DSEQ9UL01 958 aa18.3■□□□□ 0.52
VIM-205ENST00000485947 DUSP12Q9UNI6 340 aa18.3■□□□□ 0.52
VIM-205ENST00000485947 ANO9A1A5B4 782 aa18.29■□□□□ 0.52
VIM-205ENST00000485947 OR6C75A6NL08 312 aa18.29■□□□□ 0.52
VIM-205ENST00000485947 LGALS16A8MUM7 142 aa18.29■□□□□ 0.52
VIM-205ENST00000485947 PIRO00625 290 aa18.29■□□□□ 0.52
VIM-205ENST00000485947 N4BP1O75113 896 aaKnown RBP18.29■□□□□ 0.52
VIM-205ENST00000485947 ACOT2P49753 483 aa18.29■□□□□ 0.52
VIM-205ENST00000485947 LILRA4P59901 499 aa18.29■□□□□ 0.52
VIM-205ENST00000485947 ENPEPQ07075 957 aa18.29■□□□□ 0.52
VIM-205ENST00000485947 NR1I3Q14994 352 aa18.29■□□□□ 0.52
VIM-205ENST00000485947 JADE1Q6IE81 842 aa18.29■□□□□ 0.52
VIM-205ENST00000485947 VPS16Q9H269 839 aa18.29■□□□□ 0.52
VIM-205ENST00000485947 CDH7Q9ULB5 785 aa18.29■□□□□ 0.52
VIM-205ENST00000485947 WDR27A2RRH5 827 aa18.28■□□□□ 0.52
VIM-205ENST00000485947 TISP43B9A030 160 aa18.28■□□□□ 0.52
VIM-205ENST00000485947 ANHXE9PGG2 379 aa18.28■□□□□ 0.52
VIM-205ENST00000485947 PRRG1O14668 218 aa18.28■□□□□ 0.52
VIM-205ENST00000485947 MICAL2O94851 1124 aa18.28■□□□□ 0.52
VIM-205ENST00000485947 LRG1P02750 347 aa18.28■□□□□ 0.52
VIM-205ENST00000485947 ASGR2P07307 311 aa18.28■□□□□ 0.52
VIM-205ENST00000485947 ODC1P11926 461 aa18.28■□□□□ 0.52
VIM-205ENST00000485947 CASP4P49662 377 aa18.28■□□□□ 0.52
VIM-205ENST00000485947 C9orf57Q5W0N0 161 aa18.28■□□□□ 0.52
VIM-205ENST00000485947 CRELD2Q6UXH1 353 aaPredicted RBP18.28■□□□□ 0.52
VIM-205ENST00000485947 DSTYKQ6XUX3 929 aa18.28■□□□□ 0.52
VIM-205ENST00000485947 INTS8Q75QN2 995 aaKnown RBP18.28■□□□□ 0.52
VIM-205ENST00000485947 MTSS1LQ765P7 747 aa18.28■□□□□ 0.52
VIM-205ENST00000485947 GRASPQ7Z6J2 395 aaPredicted RBP18.28■□□□□ 0.52
VIM-205ENST00000485947 GPD1LQ8N335 351 aa18.28■□□□□ 0.52
VIM-205ENST00000485947 LEMD2Q8NC56 503 aa18.28■□□□□ 0.52
VIM-205ENST00000485947 FEZF2Q8TBJ5 459 aa18.28■□□□□ 0.52
VIM-205ENST00000485947 CACTINQ8WUQ7 758 aaKnown RBP18.28■□□□□ 0.52
VIM-205ENST00000485947 FAM212AQ96EL1 285 aa18.28■□□□□ 0.52
VIM-205ENST00000485947 BORCS6Q96GS4 357 aa18.28■□□□□ 0.52
VIM-205ENST00000485947 MYADMQ96S97 322 aa18.28■□□□□ 0.52
VIM-205ENST00000485947 IRF2BPLQ9H1B7 796 aa18.28■□□□□ 0.52
VIM-205ENST00000485947 PCIF1Q9H4Z3 704 aa18.28■□□□□ 0.52
VIM-205ENST00000485947 HSFX1Q9UBD0 423 aa18.28■□□□□ 0.52
VIM-205ENST00000485947 UTP18Q9Y5J1 556 aaKnown RBP eCLIP18.28■□□□□ 0.52
VIM-205ENST00000485947 PDCD11Q14690 1871 aaKnown RBP18.28■□□□□ 0.52
VIM-205ENST00000485947 PTPRZ1P23471 2315 aaPredicted RBP18.28■□□□□ 0.52
VIM-205ENST00000485947 C2orf16Q68DN1 1984 aa18.28■□□□□ 0.52
VIM-205ENST00000485947 EXTL3O43909 919 aa18.27■□□□□ 0.52
VIM-205ENST00000485947 CYP11A1P05108 521 aa18.27■□□□□ 0.52
VIM-205ENST00000485947 NFICP08651 508 aa18.27■□□□□ 0.52
VIM-205ENST00000485947 KRT13P13646 458 aa18.27■□□□□ 0.52
VIM-205ENST00000485947 PTPN2P17706 415 aa18.27■□□□□ 0.52
VIM-205ENST00000485947 PNPLA4P41247 253 aa18.27■□□□□ 0.52
VIM-205ENST00000485947 MCCD1P59942 119 aaPredicted RBP18.27■□□□□ 0.52
VIM-205ENST00000485947 PABPC1LQ4VXU2 614 aaKnown RBP18.27■□□□□ 0.52
VIM-205ENST00000485947 VWA3BQ502W6 1294 aa18.27■□□□□ 0.52
VIM-205ENST00000485947 MIIPQ5JXC2 388 aa18.27■□□□□ 0.52
VIM-205ENST00000485947 FKBP15Q5T1M5 1219 aa18.27■□□□□ 0.52
VIM-205ENST00000485947 BRSK2Q8IWQ3 736 aa18.27■□□□□ 0.52
VIM-205ENST00000485947 ELMOD1Q8N336 334 aa18.27■□□□□ 0.52
VIM-205ENST00000485947 NDST4Q9H3R1 872 aa18.27■□□□□ 0.52
VIM-205ENST00000485947 INTS13Q9NVM9 706 aa18.27■□□□□ 0.52
VIM-205ENST00000485947 DPP3Q9NY33 737 aa18.27■□□□□ 0.52
VIM-205ENST00000485947 GDE1Q9NZC3 331 aa18.27■□□□□ 0.52
VIM-205ENST00000485947 WNT16Q9UBV4 365 aa18.27■□□□□ 0.52
VIM-205ENST00000485947 MYO10Q9HD67 2058 aa18.27■□□□□ 0.51
VIM-205ENST00000485947 A0A1W2PQC6 194 aa18.26■□□□□ 0.51
VIM-205ENST00000485947 GOLGA6L6A8MZA4 724 aa18.26■□□□□ 0.51
VIM-205ENST00000485947 ZNF197O14709 1029 aa18.26■□□□□ 0.51
VIM-205ENST00000485947 CCL16O15467 120 aa18.26■□□□□ 0.51
VIM-205ENST00000485947 SMARCB1Q12824 385 aa18.26■□□□□ 0.51
VIM-205ENST00000485947 BFSP1Q12934 665 aa18.26■□□□□ 0.51
VIM-205ENST00000485947 GPR17Q13304 367 aa18.26■□□□□ 0.51
VIM-205ENST00000485947 PLD1Q13393 1074 aa18.26■□□□□ 0.51
VIM-205ENST00000485947 SURF1Q15526 300 aa18.26■□□□□ 0.51
VIM-205ENST00000485947 OVOS1Q6IE37 1185 aa18.26■□□□□ 0.51
VIM-205ENST00000485947 GET4Q7L5D6 327 aaPredicted RBP18.26■□□□□ 0.51
VIM-205ENST00000485947 VSTM4Q8IW00 320 aa18.26■□□□□ 0.51
VIM-205ENST00000485947 DRC7Q8IY82 874 aa18.26■□□□□ 0.51
VIM-205ENST00000485947 SLC44A3Q8N4M1 653 aa18.26■□□□□ 0.51
VIM-205ENST00000485947 CYP4F11Q9HBI6 524 aa18.26■□□□□ 0.51
VIM-205ENST00000485947 IMPACTQ9P2X3 320 aa18.26■□□□□ 0.51
VIM-205ENST00000485947 POLIQ9UNA4 740 aa18.26■□□□□ 0.51
VIM-205ENST00000485947 ITIH6Q6UXX5 1313 aa18.25■□□□□ 0.51
VIM-205ENST00000485947 PES1O00541 588 aaKnown RBP18.25■□□□□ 0.51
VIM-205ENST00000485947 SRFP11831 508 aa18.25■□□□□ 0.51
VIM-205ENST00000485947 CPB1P15086 417 aa18.25■□□□□ 0.51
VIM-205ENST00000485947 PBX1P40424 430 aa18.25■□□□□ 0.51
VIM-205ENST00000485947 TAF6P49848 677 aa18.25■□□□□ 0.51
VIM-205ENST00000485947 CLCN5P51795 746 aa18.25■□□□□ 0.51
VIM-205ENST00000485947 UBXN1Q04323 297 aa18.25■□□□□ 0.51
VIM-205ENST00000485947 HTR4Q13639 388 aa18.25■□□□□ 0.51
VIM-205ENST00000485947 SNRNP35Q16560 246 aaKnown RBP18.25■□□□□ 0.51
VIM-205ENST00000485947 IQCEQ6IPM2 695 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms