RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 MBTPS2O43462 519 aa8.62□□□□□ -1.03
USP40-216ENST00000485943 N4BP1O75113 896 aaKnown RBP8.62□□□□□ -1.03
USP40-216ENST00000485943 TBX10O75333 385 aa8.62□□□□□ -1.03
USP40-216ENST00000485943 GNA14O95837 355 aa8.62□□□□□ -1.03
USP40-216ENST00000485943 IL9P15248 144 aa8.62□□□□□ -1.03
USP40-216ENST00000485943 TYMPP19971 482 aa8.62□□□□□ -1.03
USP40-216ENST00000485943 CCNE1P24864 410 aa8.62□□□□□ -1.03
USP40-216ENST00000485943 ATICP31939 592 aa8.62□□□□□ -1.03
USP40-216ENST00000485943 PRCPP42785 496 aa8.62□□□□□ -1.03
USP40-216ENST00000485943 EPHB3P54753 998 aa8.62□□□□□ -1.03
USP40-216ENST00000485943 STX17P56962 302 aa8.62□□□□□ -1.03
USP40-216ENST00000485943 ADCY1Q08828 1119 aa8.62□□□□□ -1.03
USP40-216ENST00000485943 SNW1Q13573 536 aaKnown RBP8.62□□□□□ -1.03
USP40-216ENST00000485943 CAMK1Q14012 370 aa8.62□□□□□ -1.03
USP40-216ENST00000485943 CBX2Q14781 532 aaPredicted RBP8.62□□□□□ -1.03
USP40-216ENST00000485943 MAPRE1Q15691 268 aaKnown RBP8.62□□□□□ -1.03
USP40-216ENST00000485943 WDR72Q3MJ13 1102 aa8.62□□□□□ -1.03
USP40-216ENST00000485943 CYP4A22Q5TCH4 519 aa8.62□□□□□ -1.03
USP40-216ENST00000485943 KIAA0319Q5VV43 1072 aa8.62□□□□□ -1.03
USP40-216ENST00000485943 TPGS2Q68CL5 300 aa8.62□□□□□ -1.03
USP40-216ENST00000485943 OTOP3Q7RTS5 596 aa8.62□□□□□ -1.03
USP40-216ENST00000485943 TRAPPC11Q7Z392 1133 aa8.62□□□□□ -1.03
USP40-216ENST00000485943 ITIH5Q86UX2 942 aa8.62□□□□□ -1.03
USP40-216ENST00000485943 SPATA2LQ8IUW3 424 aaPredicted RBP8.62□□□□□ -1.03
USP40-216ENST00000485943 SLC9A9Q8IVB4 645 aa8.62□□□□□ -1.03
USP40-216ENST00000485943 SPNS2Q8IVW8 549 aa8.62□□□□□ -1.03
USP40-216ENST00000485943 EFCAB13Q8IY85 973 aa8.62□□□□□ -1.03
USP40-216ENST00000485943 ADGRF2Q8IZF7 708 aa8.62□□□□□ -1.03
USP40-216ENST00000485943 TMEM86AQ8N2M4 240 aa8.62□□□□□ -1.03
USP40-216ENST00000485943 C12orf76Q8N812 135 aaPredicted RBP8.62□□□□□ -1.03
USP40-216ENST00000485943 ARMC2Q8NEN0 867 aa8.62□□□□□ -1.03
USP40-216ENST00000485943 LNX1Q8TBB1 728 aaPredicted RBP8.62□□□□□ -1.03
USP40-216ENST00000485943 HDAC7Q8WUI4 952 aa8.62□□□□□ -1.03
USP40-216ENST00000485943 PGLYRP2Q96PD5 576 aa8.62□□□□□ -1.03
USP40-216ENST00000485943 MED10Q9BTT4 135 aa8.62□□□□□ -1.03
USP40-216ENST00000485943 CXCL16Q9H2A7 254 aa8.62□□□□□ -1.03
USP40-216ENST00000485943 RXFP1Q9HBX9 757 aa8.62□□□□□ -1.03
USP40-216ENST00000485943 CHST7Q9NS84 486 aa8.62□□□□□ -1.03
USP40-216ENST00000485943 ZDHHC7Q9NXF8 308 aa8.62□□□□□ -1.03
USP40-216ENST00000485943 ABI2Q9NYB9 513 aaPredicted RBP8.62□□□□□ -1.03
USP40-216ENST00000485943 MTRRQ9UBK8 725 aa8.62□□□□□ -1.03
USP40-216ENST00000485943 PRKAG3Q9UGI9 489 aa8.62□□□□□ -1.03
USP40-216ENST00000485943 ARMCX3Q9UH62 379 aaPredicted RBP8.62□□□□□ -1.03
USP40-216ENST00000485943 MAN1B1Q9UKM7 699 aa8.62□□□□□ -1.03
USP40-216ENST00000485943 TRAF3IP3Q9Y228 551 aa8.62□□□□□ -1.03
USP40-216ENST00000485943 USP15Q9Y4E8 981 aaPredicted RBP8.62□□□□□ -1.03
USP40-216ENST00000485943 BACE2Q9Y5Z0 518 aa8.62□□□□□ -1.03
USP40-216ENST00000485943 MTCL1Q9Y4B5 1905 aaKnown RBP8.62□□□□□ -1.03
USP40-216ENST00000485943 MYH10P35580 1976 aa8.61□□□□□ -1.03
USP40-216ENST00000485943 ATG2AQ2TAZ0 1938 aa8.61□□□□□ -1.03
USP40-216ENST00000485943 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP8.61□□□□□ -1.03
USP40-216ENST00000485943 A8MXQ7 604 aa8.61□□□□□ -1.03
USP40-216ENST00000485943 DLL1O00548 723 aa8.61□□□□□ -1.03
USP40-216ENST00000485943 PIRO00625 290 aa8.61□□□□□ -1.03
USP40-216ENST00000485943 CCL16O15467 120 aa8.61□□□□□ -1.03
USP40-216ENST00000485943 HNRNPA1P09651 372 aaKnown RBP eCLIP8.61□□□□□ -1.03
USP40-216ENST00000485943 MTIF2P46199 727 aaKnown RBP8.61□□□□□ -1.03
USP40-216ENST00000485943 TUFMP49411 452 aaKnown RBP8.61□□□□□ -1.03
USP40-216ENST00000485943 MXI1P50539 228 aa8.61□□□□□ -1.03
USP40-216ENST00000485943 YWHAEP62258 255 aaKnown RBP8.61□□□□□ -1.03
USP40-216ENST00000485943 TPM4P67936 248 aa8.61□□□□□ -1.03
USP40-216ENST00000485943 ROR1Q01973 937 aa8.61□□□□□ -1.03
USP40-216ENST00000485943 CYP27A1Q02318 531 aa8.61□□□□□ -1.03
USP40-216ENST00000485943 EHHADHQ08426 723 aa8.61□□□□□ -1.03
USP40-216ENST00000485943 SMARCB1Q12824 385 aa8.61□□□□□ -1.03
USP40-216ENST00000485943 NCOA4Q13772 614 aa8.61□□□□□ -1.03
USP40-216ENST00000485943 NAB2Q15742 525 aa8.61□□□□□ -1.03
USP40-216ENST00000485943 NFE2Q16621 373 aaPredicted RBP8.61□□□□□ -1.03
USP40-216ENST00000485943 SGSM1Q2NKQ1 1148 aa8.61□□□□□ -1.03
USP40-216ENST00000485943 UVSSAQ2YD98 709 aa8.61□□□□□ -1.03
USP40-216ENST00000485943 SLC39A12Q504Y0 691 aa8.61□□□□□ -1.03
USP40-216ENST00000485943 CRELD2Q6UXH1 353 aaPredicted RBP8.61□□□□□ -1.03
USP40-216ENST00000485943 CYP26C1Q6V0L0 522 aa8.61□□□□□ -1.03
USP40-216ENST00000485943 SCARA5Q6ZMJ2 495 aa8.61□□□□□ -1.03
USP40-216ENST00000485943 C4orf50Q6ZRC1 276 aa8.61□□□□□ -1.03
USP40-216ENST00000485943 C15orf39Q6ZRI6 1047 aa8.61□□□□□ -1.03
USP40-216ENST00000485943 PDZD4Q76G19 769 aaPredicted RBP8.61□□□□□ -1.03
USP40-216ENST00000485943 GET4Q7L5D6 327 aaPredicted RBP8.61□□□□□ -1.03
USP40-216ENST00000485943 DPH6Q7L8W6 267 aa8.61□□□□□ -1.03
USP40-216ENST00000485943 C1orf127Q8N9H9 656 aa8.61□□□□□ -1.03
USP40-216ENST00000485943 MLKLQ8NB16 471 aa8.61□□□□□ -1.03
USP40-216ENST00000485943 SMRP1Q8NCR6 262 aa8.61□□□□□ -1.03
USP40-216ENST00000485943 C3orf58Q8NDZ4 430 aa8.61□□□□□ -1.03
USP40-216ENST00000485943 ENGASEQ8NFI3 743 aa8.61□□□□□ -1.03
USP40-216ENST00000485943 ZNF461Q8TAF7 563 aa8.61□□□□□ -1.03
USP40-216ENST00000485943 TNIP3Q96KP6 325 aa8.61□□□□□ -1.03
USP40-216ENST00000485943 MKNK1Q9BUB5 465 aa8.61□□□□□ -1.03
USP40-216ENST00000485943 PHF7Q9BWX1 381 aaPredicted RBP8.61□□□□□ -1.03
USP40-216ENST00000485943 NAT10Q9H0A0 1025 aaKnown RBP8.61□□□□□ -1.03
USP40-216ENST00000485943 ADAM7Q9H2U9 754 aa8.61□□□□□ -1.03
USP40-216ENST00000485943 CLSTN2Q9H4D0 955 aa8.61□□□□□ -1.03
USP40-216ENST00000485943 DDX43Q9NXZ2 648 aaKnown RBP8.61□□□□□ -1.03
USP40-216ENST00000485943 FBXL5Q9UKA1 691 aa8.61□□□□□ -1.03
USP40-216ENST00000485943 PCDHB5Q9Y5E4 795 aa8.61□□□□□ -1.03
USP40-216ENST00000485943 SCN1AP35498 2009 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 M0QZQ0 153 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 ZNF197O14709 1029 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 IKBKBO14920 756 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 MAPK13O15264 365 aa8.6□□□□□ -1.03
USP40-216ENST00000485943 SLC16A3O15427 465 aaKnown RBP8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms