RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 TBC1D7Q9P0N9 293 aa13.07□□□□□ -0.32
SQSTM1-207ENST00000481335 PCDHGA2Q9Y5H1 932 aa13.07□□□□□ -0.32
SQSTM1-207ENST00000481335 COL4A3Q01955 1670 aa13.07□□□□□ -0.32
SQSTM1-207ENST00000481335 HEPACAM2A8MVW5 462 aa13.06□□□□□ -0.32
SQSTM1-207ENST00000481335 HUS1O60921 280 aa13.06□□□□□ -0.32
SQSTM1-207ENST00000481335 ITGB3P05106 788 aa13.06□□□□□ -0.32
SQSTM1-207ENST00000481335 TMEM191BP0C7N4 346 aa13.06□□□□□ -0.32
SQSTM1-207ENST00000481335 HAPLN1P10915 354 aaPredicted RBP13.06□□□□□ -0.32
SQSTM1-207ENST00000481335 ATF6P18850 670 aa13.06□□□□□ -0.32
SQSTM1-207ENST00000481335 DDX6P26196 483 aaKnown RBP eCLIP13.06□□□□□ -0.321e-6■□□□□ 10.6
SQSTM1-207ENST00000481335 GABRR2P28476 465 aa13.06□□□□□ -0.32
SQSTM1-207ENST00000481335 POLR2BP30876 1174 aaKnown RBP13.06□□□□□ -0.32
SQSTM1-207ENST00000481335 MYL7Q01449 175 aa13.06□□□□□ -0.32
SQSTM1-207ENST00000481335 PPP2R5DQ14738 602 aa13.06□□□□□ -0.32
SQSTM1-207ENST00000481335 ARHGAP29Q52LW3 1261 aa13.06□□□□□ -0.32
SQSTM1-207ENST00000481335 WSCD1Q658N2 575 aa13.06□□□□□ -0.32
SQSTM1-207ENST00000481335 GAREM2Q75VX8 874 aa13.06□□□□□ -0.32
SQSTM1-207ENST00000481335 DPH6Q7L8W6 267 aa13.06□□□□□ -0.32
SQSTM1-207ENST00000481335 YAF2Q8IY57 180 aa13.06□□□□□ -0.32
SQSTM1-207ENST00000481335 MAML2Q8IZL2 1156 aaPredicted RBP13.06□□□□□ -0.32
SQSTM1-207ENST00000481335 TOP6BLQ8N6T0 577 aa13.06□□□□□ -0.32
SQSTM1-207ENST00000481335 SAAL1Q96ER3 474 aa13.06□□□□□ -0.32
SQSTM1-207ENST00000481335 ANKRD36BP1Q96IX9 119 aa13.06□□□□□ -0.32
SQSTM1-207ENST00000481335 SEPT5Q99719 369 aaPredicted RBP13.06□□□□□ -0.32
SQSTM1-207ENST00000481335 CBWD1Q9BRT8 395 aa13.06□□□□□ -0.32
SQSTM1-207ENST00000481335 MKNK1Q9BUB5 465 aa13.06□□□□□ -0.32
SQSTM1-207ENST00000481335 CHRDQ9H2X0 955 aa13.06□□□□□ -0.32
SQSTM1-207ENST00000481335 ATXN3LQ9H3M9 355 aa13.06□□□□□ -0.32
SQSTM1-207ENST00000481335 TASP1Q9H6P5 420 aa13.06□□□□□ -0.32
SQSTM1-207ENST00000481335 PRMT8Q9NR22 394 aaPredicted RBP13.06□□□□□ -0.32
SQSTM1-207ENST00000481335 CGNQ9P2M7 1197 aaKnown RBP13.06□□□□□ -0.32
SQSTM1-207ENST00000481335 SLC27A5Q9Y2P5 690 aa13.06□□□□□ -0.32
SQSTM1-207ENST00000481335 R3HCC1Q9Y3T6 440 aaKnown RBP13.06□□□□□ -0.32
SQSTM1-207ENST00000481335 PCDHB5Q9Y5E4 795 aa13.06□□□□□ -0.32
SQSTM1-207ENST00000481335 PIAS3Q9Y6X2 628 aa13.06□□□□□ -0.32
SQSTM1-207ENST00000481335 PTPRDP23468 1912 aa13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 GREB1Q4ZG55 1949 aa13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 ZNF233A6NK53 670 aa13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 SHISA7A6NL88 538 aa13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 NRG2O14511 850 aaPredicted RBP13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 DPYSL4O14531 572 aa13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 KINO60870 393 aaKnown RBP13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 LRRN2O75325 713 aa13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 PRPF6O94906 941 aaKnown RBP13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 HSP90AA1P07900 732 aaKnown RBP13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 CSH1P0DML2 217 aa13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 CSH2P0DML3 217 aa13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 GJA1P17302 382 aa13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 PCSK1P29120 753 aa13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 LHX1P48742 406 aa13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 RBP5P82980 135 aa13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 MYO1EQ12965 1108 aa13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 TAF12Q16514 161 aa13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 WDR49Q8IV35 697 aa13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 ARID3BQ8IVW6 561 aaPredicted RBP13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 ADSSL1Q8N142 457 aa13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 ZNF687Q8N1G0 1237 aa13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 PDCL2Q8N4E4 241 aa13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 CSGALNACT2Q8N6G5 542 aa13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 TTC9BQ8N6N2 239 aa13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 CXorf38Q8TB03 319 aa13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 FAM200AQ8TCP9 573 aa13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 CSGALNACT1Q8TDX6 532 aa13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 FAM3CQ92520 227 aa13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 NELL1Q92832 810 aa13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 FUBP3Q96I24 572 aaKnown RBP eCLIP13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 CEP295NLQ96MC4 621 aa13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 C7orf25Q9BPX7 421 aa13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 PANK2Q9BZ23 570 aa13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 IKZF4Q9H2S9 585 aa13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 KIF9Q9HAQ2 790 aa13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 FOXD4L1Q9NU39 408 aa13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 UXTQ9UBK9 157 aaPredicted RBP13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 CFAP45Q9UL16 551 aa13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 AGAP1Q9UPQ3 857 aa13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 MTF2Q9Y483 593 aaPredicted RBP13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 FRYLO94915 3013 aa13.05□□□□□ -0.32
SQSTM1-207ENST00000481335 ANAPC1Q9H1A4 1944 aa13.04□□□□□ -0.32
SQSTM1-207ENST00000481335 GABRDO14764 452 aa13.04□□□□□ -0.32
SQSTM1-207ENST00000481335 PRPF40AO75400 957 aaKnown RBP13.04□□□□□ -0.32
SQSTM1-207ENST00000481335 F13A1P00488 732 aa13.04□□□□□ -0.32
SQSTM1-207ENST00000481335 TNNC2P02585 160 aa13.04□□□□□ -0.32
SQSTM1-207ENST00000481335 ZSCAN22P10073 491 aaPredicted RBP13.04□□□□□ -0.32
SQSTM1-207ENST00000481335 CD72P21854 359 aa13.04□□□□□ -0.32
SQSTM1-207ENST00000481335 VIPR2P41587 438 aa13.04□□□□□ -0.32
SQSTM1-207ENST00000481335 WNT7BP56706 349 aa13.04□□□□□ -0.32
SQSTM1-207ENST00000481335 RPL10AP62906 217 aaKnown RBP13.04□□□□□ -0.32
SQSTM1-207ENST00000481335 ASIC1P78348 528 aa13.04□□□□□ -0.32
SQSTM1-207ENST00000481335 FOXK2Q01167 660 aa13.04□□□□□ -0.32
SQSTM1-207ENST00000481335 EHHADHQ08426 723 aa13.04□□□□□ -0.32
SQSTM1-207ENST00000481335 FZD5Q13467 585 aa13.04□□□□□ -0.32
SQSTM1-207ENST00000481335 LRRC32Q14392 662 aa13.04□□□□□ -0.32
SQSTM1-207ENST00000481335 CFAP221Q4G0U5 840 aa13.04□□□□□ -0.32
SQSTM1-207ENST00000481335 INTS6LQ5JSJ4 861 aaKnown RBP13.04□□□□□ -0.32
SQSTM1-207ENST00000481335 FAM26FQ5R3K3 315 aa13.04□□□□□ -0.32
SQSTM1-207ENST00000481335 GPR158Q5T848 1215 aa13.04□□□□□ -0.32
SQSTM1-207ENST00000481335 SHC4Q6S5L8 630 aa13.04□□□□□ -0.32
SQSTM1-207ENST00000481335 UNC13DQ70J99 1090 aa13.04□□□□□ -0.32
SQSTM1-207ENST00000481335 EPM2AIP1Q7L775 607 aaPredicted RBP13.04□□□□□ -0.32
SQSTM1-207ENST00000481335 LRRTM3Q86VH5 581 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms