RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 GDPD2Q9HCC8 539 aa23.38■■□□□ 1.33
COL9A3-211ENST00000477612 SNX9Q9Y5X1 595 aa23.38■■□□□ 1.33
COL9A3-211ENST00000477612 NUP210Q8TEM1 1887 aaPredicted RBP23.38■■□□□ 1.33
COL9A3-211ENST00000477612 CST3P01034 146 aaPredicted RBP23.37■■□□□ 1.33
COL9A3-211ENST00000477612 AOC1P19801 751 aa23.37■■□□□ 1.33
COL9A3-211ENST00000477612 FCARP24071 287 aa23.37■■□□□ 1.33
COL9A3-211ENST00000477612 LHX1P48742 406 aa23.37■■□□□ 1.33
COL9A3-211ENST00000477612 SOWAHAQ2M3V2 549 aa23.37■■□□□ 1.33
COL9A3-211ENST00000477612 PHLDB3Q6NSJ2 640 aa23.37■■□□□ 1.33
COL9A3-211ENST00000477612 DNAJB7Q7Z6W7 309 aaPredicted RBP23.37■■□□□ 1.33
COL9A3-211ENST00000477612 ZNF516Q92618 1163 aa23.37■■□□□ 1.33
COL9A3-211ENST00000477612 HPDLQ96IR7 371 aa23.37■■□□□ 1.33
COL9A3-211ENST00000477612 ASB16Q96NS5 453 aa23.37■■□□□ 1.33
COL9A3-211ENST00000477612 FNBP1Q96RU3 617 aa23.37■■□□□ 1.33
COL9A3-211ENST00000477612 PKMYT1Q99640 499 aa23.37■■□□□ 1.33
COL9A3-211ENST00000477612 TRPV4Q9HBA0 871 aa23.37■■□□□ 1.33
COL9A3-211ENST00000477612 DDX43Q9NXZ2 648 aaKnown RBP23.37■■□□□ 1.33
COL9A3-211ENST00000477612 R3HCC1Q9Y3T6 440 aaKnown RBP23.37■■□□□ 1.33
COL9A3-211ENST00000477612 PTPRDP23468 1912 aa23.37■■□□□ 1.33
COL9A3-211ENST00000477612 OBSL1O75147 1896 aa23.36■■□□□ 1.33
COL9A3-211ENST00000477612 GREB1Q4ZG55 1949 aa23.36■■□□□ 1.33
COL9A3-211ENST00000477612 TULP1O00294 542 aaPredicted RBP23.36■■□□□ 1.33
COL9A3-211ENST00000477612 EXOC3O60645 756 aa23.36■■□□□ 1.33
COL9A3-211ENST00000477612 FAM163BP0C2L3 166 aa23.36■■□□□ 1.33
COL9A3-211ENST00000477612 PRR29P0C7W0 189 aa23.36■■□□□ 1.33
COL9A3-211ENST00000477612 DLATP10515 647 aaKnown RBP23.36■■□□□ 1.33
COL9A3-211ENST00000477612 HAPLN1P10915 354 aaPredicted RBP23.36■■□□□ 1.33
COL9A3-211ENST00000477612 MYL4P12829 197 aa23.36■■□□□ 1.33
COL9A3-211ENST00000477612 TNNI1P19237 187 aa23.36■■□□□ 1.33
COL9A3-211ENST00000477612 CLDN10P78369 228 aa23.36■■□□□ 1.33
COL9A3-211ENST00000477612 MYL7Q01449 175 aa23.36■■□□□ 1.33
COL9A3-211ENST00000477612 TSPY1Q01534 308 aa23.36■■□□□ 1.33
COL9A3-211ENST00000477612 TCF15Q12870 199 aa23.36■■□□□ 1.33
COL9A3-211ENST00000477612 KCNB1Q14721 858 aa23.36■■□□□ 1.33
COL9A3-211ENST00000477612 NFE2Q16621 373 aaPredicted RBP23.36■■□□□ 1.33
COL9A3-211ENST00000477612 TANGO2Q6ICL3 276 aa23.36■■□□□ 1.33
COL9A3-211ENST00000477612 ITIH5Q86UX2 942 aa23.36■■□□□ 1.33
COL9A3-211ENST00000477612 SHKBP1Q8TBC3 707 aa23.36■■□□□ 1.33
COL9A3-211ENST00000477612 PLA2G2FQ9BZM2 168 aa23.36■■□□□ 1.33
COL9A3-211ENST00000477612 TMLHEQ9NVH6 421 aa23.36■■□□□ 1.33
COL9A3-211ENST00000477612 FGF19O95750 216 aa23.35■■□□□ 1.33
COL9A3-211ENST00000477612 STAU1O95793 577 aaKnown RBP23.35■■□□□ 1.33
COL9A3-211ENST00000477612 ATF6P18850 670 aa23.35■■□□□ 1.33
COL9A3-211ENST00000477612 PTPN5P54829 565 aa23.35■■□□□ 1.33
COL9A3-211ENST00000477612 STARD6P59095 220 aa23.35■■□□□ 1.33
COL9A3-211ENST00000477612 NHLH1Q02575 133 aa23.35■■□□□ 1.33
COL9A3-211ENST00000477612 MGAT5BQ3V5L5 792 aa23.35■■□□□ 1.33
COL9A3-211ENST00000477612 INTS6LQ5JSJ4 861 aaKnown RBP23.35■■□□□ 1.33
COL9A3-211ENST00000477612 FAM78AQ5JUQ0 283 aa23.35■■□□□ 1.33
COL9A3-211ENST00000477612 OSTM1Q86WC4 334 aa23.35■■□□□ 1.33
COL9A3-211ENST00000477612 ADGRF2Q8IZF7 708 aa23.35■■□□□ 1.33
COL9A3-211ENST00000477612 FLCNQ8NFG4 579 aa23.35■■□□□ 1.33
COL9A3-211ENST00000477612 PLEKHO2Q8TD55 490 aa23.35■■□□□ 1.33
COL9A3-211ENST00000477612 PARD3BQ8TEW8 1205 aa23.35■■□□□ 1.33
COL9A3-211ENST00000477612 CCDC47Q96A33 483 aaKnown RBP23.35■■□□□ 1.33
COL9A3-211ENST00000477612 CCDC127Q96BQ5 260 aa23.35■■□□□ 1.33
COL9A3-211ENST00000477612 ZSWIM3Q96MP5 696 aa23.35■■□□□ 1.33
COL9A3-211ENST00000477612 KXD1Q9BQD3 176 aa23.35■■□□□ 1.33
COL9A3-211ENST00000477612 ZFP14Q9HCL3 533 aa23.35■■□□□ 1.33
COL9A3-211ENST00000477612 CA14Q9ULX7 337 aa23.35■■□□□ 1.33
COL9A3-211ENST00000477612 TRAF3IP3Q9Y228 551 aa23.35■■□□□ 1.33
COL9A3-211ENST00000477612 PCDHB5Q9Y5E4 795 aa23.35■■□□□ 1.33
COL9A3-211ENST00000477612 MIA3Q5JRA6 1907 aa23.34■■□□□ 1.33
COL9A3-211ENST00000477612 GALR2O43603 387 aaPredicted RBP23.34■■□□□ 1.33
COL9A3-211ENST00000477612 SOAT2O75908 522 aa23.34■■□□□ 1.33
COL9A3-211ENST00000477612 KIF20AO95235 890 aa23.34■■□□□ 1.33
COL9A3-211ENST00000477612 PFKPQ01813 784 aa23.34■■□□□ 1.33
COL9A3-211ENST00000477612 NFIL3Q16649 462 aa23.34■■□□□ 1.33
COL9A3-211ENST00000477612 KBTBD7Q8WVZ9 684 aa23.34■■□□□ 1.33
COL9A3-211ENST00000477612 SMARCD2Q92925 531 aa23.34■■□□□ 1.33
COL9A3-211ENST00000477612 ABCB6Q9NP58 842 aa23.34■■□□□ 1.33
COL9A3-211ENST00000477612 ARHGEF3Q9NR81 526 aa23.34■■□□□ 1.33
COL9A3-211ENST00000477612 PI15O43692 258 aa23.33■■□□□ 1.33
COL9A3-211ENST00000477612 GJA1P17302 382 aa23.33■■□□□ 1.33
COL9A3-211ENST00000477612 PCSK1P29120 753 aa23.33■■□□□ 1.33
COL9A3-211ENST00000477612 AP3M2P53677 418 aa23.33■■□□□ 1.33
COL9A3-211ENST00000477612 TEAD2Q15562 447 aa23.33■■□□□ 1.33
COL9A3-211ENST00000477612 FAM171BQ6P995 826 aa23.33■■□□□ 1.33
COL9A3-211ENST00000477612 GAREM2Q75VX8 874 aa23.33■■□□□ 1.33
COL9A3-211ENST00000477612 FMR1NBQ8N0W7 255 aaPredicted RBP23.33■■□□□ 1.33
COL9A3-211ENST00000477612 SEPT5Q99719 369 aaPredicted RBP23.33■■□□□ 1.33
COL9A3-211ENST00000477612 IRF2BPLQ9H1B7 796 aa23.33■■□□□ 1.33
COL9A3-211ENST00000477612 ZNF334Q9HCZ1 680 aaPredicted RBP23.33■■□□□ 1.33
COL9A3-211ENST00000477612 ABI2Q9NYB9 513 aaPredicted RBP23.33■■□□□ 1.33
COL9A3-211ENST00000477612 COL4A2P08572 1712 aa23.33■■□□□ 1.32
COL9A3-211ENST00000477612 ZNF638Q14966 1978 aaKnown RBP23.32■■□□□ 1.32
COL9A3-211ENST00000477612 CACNA1HO95180 2353 aa23.32■■□□□ 1.32
COL9A3-211ENST00000477612 A0A1W2PRU2 124 aa23.32■■□□□ 1.32
COL9A3-211ENST00000477612 WARSP23381 471 aaKnown RBP23.32■■□□□ 1.32
COL9A3-211ENST00000477612 ATICP31939 592 aa23.32■■□□□ 1.32
COL9A3-211ENST00000477612 VEPH1Q14D04 833 aa23.32■■□□□ 1.32
COL9A3-211ENST00000477612 CFAP221Q4G0U5 840 aa23.32■■□□□ 1.32
COL9A3-211ENST00000477612 GUF1Q8N442 669 aaKnown RBP23.32■■□□□ 1.32
COL9A3-211ENST00000477612 E2F7Q96AV8 911 aa23.32■■□□□ 1.32
COL9A3-211ENST00000477612 CCDC34Q96HJ3 373 aa23.32■■□□□ 1.32
COL9A3-211ENST00000477612 FUBP3Q96I24 572 aaKnown RBP eCLIP23.32■■□□□ 1.32
COL9A3-211ENST00000477612 SHDQ96IW2 340 aa23.32■■□□□ 1.32
COL9A3-211ENST00000477612 LPIN3Q9BQK8 851 aa23.32■■□□□ 1.32
COL9A3-211ENST00000477612 MKNK1Q9BUB5 465 aa23.32■■□□□ 1.32
COL9A3-211ENST00000477612 DDX23Q9BUQ8 820 aaKnown RBP23.32■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms