RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 SMCO3A2RU48 225 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 TRAPPC3O43617 180 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 PRG2P13727 222 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 GAP43P17677 238 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 ARF4P18085 180 aaPredicted RBP9.35□□□□□ -0.91
COL6A3-210ENST00000473258 NAT1P18440 290 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 NR2F2P24468 414 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 BST2Q10589 180 aaKnown RBP9.35□□□□□ -0.91
COL6A3-210ENST00000473258 GPS1Q13098 491 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 CCDC58Q4VC31 144 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 C6orf10Q5SRN2 563 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 DHX40Q8IX18 779 aaKnown RBP9.35□□□□□ -0.91
COL6A3-210ENST00000473258 TDRD9Q8NDG6 1382 aaKnown RBP9.35□□□□□ -0.91
COL6A3-210ENST00000473258 FAM162AQ96A26 154 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 NT5C1BQ96P26 610 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 ZNF692Q9BU19 519 aaPredicted RBP9.35□□□□□ -0.91
COL6A3-210ENST00000473258 GSDMCQ9BYG8 508 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 GLT8D2Q9H1C3 349 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 CDYLQ9Y232 598 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 HFM1A2PYH4 1435 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 CYP19A1P11511 503 aaPredicted RBP9.35□□□□□ -0.91
COL6A3-210ENST00000473258 ITKQ08881 620 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 TNFAIP8L3Q5GJ75 292 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 ARMC6Q6NXE6 501 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 LRRC8DQ7L1W4 858 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 ZBTB46Q86UZ6 589 aa9.35□□□□□ -0.91
COL6A3-210ENST00000473258 MTG1Q9BT17 334 aaPredicted RBP9.35□□□□□ -0.91
COL6A3-210ENST00000473258 TTC26A0AVF1 554 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 PRMT3O60678 531 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 MYL2P10916 166 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 GARTP22102 1010 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 XIAPP98170 497 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 GFPT1Q06210 699 aaPredicted RBP9.34□□□□□ -0.91
COL6A3-210ENST00000473258 LRRC74AQ0VAA2 488 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 SSX2Q16385 188 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 DDB1Q16531 1140 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 PUS10Q3MIT2 529 aaKnown RBP9.34□□□□□ -0.91
COL6A3-210ENST00000473258 ZNF568Q3ZCX4 644 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 SPDYE7PQ495Y7 208 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 SNAP47Q5SQN1 464 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 BROXQ5VW32 411 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 PRMT9Q6P2P2 845 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 COLGALT2Q8IYK4 626 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 TBC1D19Q8N5T2 526 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 CCNYQ8ND76 341 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 SLC22A8Q8TCC7 542 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 CABLES1Q8TDN4 633 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 GCOM2Q9BZD3 368 aaPredicted RBP9.34□□□□□ -0.91
COL6A3-210ENST00000473258 PRDM11Q9NQV5 511 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 BTBD18B2RXH4 712 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 MAP2K7O14733 419 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 PDPK1O15530 556 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 HLA-DOAP06340 250 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 ZNF24P17028 368 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 VCLP18206 1134 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 CCND2P30279 289 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 ACLYP53396 1101 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 C1orf94Q6P1W5 598 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 ISLR2Q6UXK2 745 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 SSH3Q8TE77 659 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 KRT35Q92764 455 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 CEP295NLQ96MC4 621 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 TUBA1CQ9BQE3 449 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 SENP7Q9BQF6 1050 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 RIOK2Q9BVS4 552 aaKnown RBP9.34□□□□□ -0.91
COL6A3-210ENST00000473258 PUS7LQ9H0K6 701 aaKnown RBP9.34□□□□□ -0.91
COL6A3-210ENST00000473258 NMRK1Q9NWW6 199 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 VPS54Q9P1Q0 977 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 PA2G4Q9UQ80 394 aaKnown RBP9.34□□□□□ -0.91
COL6A3-210ENST00000473258 PCDHGC5Q9Y5F6 944 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 DHFRP00374 187 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 ACAT1P24752 427 aaKnown RBP9.34□□□□□ -0.91
COL6A3-210ENST00000473258 SLC26A3P40879 764 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 CCNFP41002 786 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 HSPA2P54652 639 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 KCNJ2P63252 427 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 HSD17B12Q53GQ0 312 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 COPS6Q7L5N1 327 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 SFRP1Q8N474 314 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 KBTBD8Q8NFY9 601 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 PPP1R36Q96LQ0 422 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 RBM15Q96T37 977 aaKnown RBP eCLIP9.34□□□□□ -0.91
COL6A3-210ENST00000473258 OGDHLQ9ULD0 1010 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 FAM95CA0A1B0GW59 222 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 PHF2O75151 1096 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 LRRN2O75325 713 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 P4HBP07237 508 aaKnown RBP9.34□□□□□ -0.91
COL6A3-210ENST00000473258 LYNP07948 512 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 NUDT7P0C024 238 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 MAGEA10P43363 369 aaPredicted RBP9.34□□□□□ -0.91
COL6A3-210ENST00000473258 ABCB5Q2M3G0 1257 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 KCTD6Q8NC69 237 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 SETD9Q8NE22 299 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 ZHX1-C8orf76Q96EF9 292 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 SGF29Q96ES7 293 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 C9orf72Q96LT7 481 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 NDUFAF4Q9P032 175 aa9.34□□□□□ -0.91
COL6A3-210ENST00000473258 MEIS1O00470 390 aa9.34□□□□□ -0.92
COL6A3-210ENST00000473258 FAM20BO75063 409 aa9.34□□□□□ -0.92
COL6A3-210ENST00000473258 FEN1P39748 380 aaKnown RBP9.34□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms