RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 VPS33AQ96AX1 596 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 C9orf16Q9BUW7 83 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 NDUFB9Q9Y6M9 179 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 AP1S2P56377 157 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 DDR2Q16832 855 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 CYP4Z2PQ8N1L4 340 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 WNK4Q96J92 1243 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 UNC45AQ9H3U1 944 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 MAPRE3Q9UPY8 281 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 HSD17B3P37058 310 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 SPDYAQ5MJ70 313 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 OMA1Q96E52 524 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 OSBPL10Q9BXB5 764 aa13.85□□□□□ -0.19
COL6A3-209ENST00000472056 AIM2O14862 343 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 SOAT2O75908 522 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 DPP9Q86TI2 863 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 JAMLQ86YT9 394 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 PHKA1P46020 1223 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 TPI1P60174 286 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 ROR2Q01974 943 aaKnown RBP13.84□□□□□ -0.19
COL6A3-209ENST00000472056 ITGA9Q13797 1035 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 SEL1L3Q68CR1 1132 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 NAPEPLDQ6IQ20 393 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 TMPRSS6Q8IU80 811 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 SHCBP1Q8NEM2 672 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 INPP5DQ92835 1189 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 MYRFQ9Y2G1 1151 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 ECDO95905 644 aaPredicted RBP13.84□□□□□ -0.19
COL6A3-209ENST00000472056 CCDC144BQ3MJ40 725 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 CCDC153Q494R4 210 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 FIGNQ5HY92 759 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 THNSL1Q8IYQ7 743 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 URGCPQ8TCY9 931 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 SMARCAD1Q9H4L7 1026 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 STK32BQ9NY57 414 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 SPDYE5A6NIY4 337 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 RALAP11233 206 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 PHKG2P15735 406 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 TTLL9Q3SXZ7 439 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 SPDYE7PQ495Y7 208 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 CATSPERBQ9H7T0 1116 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 CPDO75976 1380 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.84□□□□□ -0.19
COL6A3-209ENST00000472056 NDUFS3O75489 264 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 ATP6V1B1P15313 513 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 PMF1Q6P1K2 205 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 NUP93Q8N1F7 819 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 OR6B3Q8NGW1 331 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 ASIC4Q96FT7 647 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 C17orf75Q9HAS0 396 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 LY9Q9HBG7 655 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 MYO5BQ9ULV0 1848 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 CYP2D7A0A087X1C5 515 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 ANXA6P08133 673 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 BCAP31P51572 246 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 ZNF568Q3ZCX4 644 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 NEK10Q6ZWH5 1172 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 ASB2Q96Q27 587 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 C15orf41Q9Y2V0 281 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 USP42Q9H9J4 1324 aaKnown RBP13.84□□□□□ -0.19
COL6A3-209ENST00000472056 FKBP9O95302 570 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 GRM4Q14833 912 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 FAM180AQ6UWF9 173 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 FKBP9P1Q75LS8 142 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 OSCP1Q8WVF1 389 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 STARD8Q92502 1023 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 ZIM3Q96PE6 472 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 TRIM9Q9C026 710 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 SPRTNQ9H040 489 aaPredicted RBP13.84□□□□□ -0.19
COL6A3-209ENST00000472056 TASP1Q9H6P5 420 aa13.84□□□□□ -0.19
COL6A3-209ENST00000472056 RBAKQ9NYW8 714 aaPredicted RBP13.84□□□□□ -0.19
COL6A3-209ENST00000472056 SULF1Q8IWU6 871 aa13.83□□□□□ -0.19
COL6A3-209ENST00000472056 GALNT4Q8N4A0 578 aa13.83□□□□□ -0.19
COL6A3-209ENST00000472056 CENPTQ96BT3 561 aa13.83□□□□□ -0.19
COL6A3-209ENST00000472056 HEMGNQ9BXL5 484 aa13.83□□□□□ -0.19
COL6A3-209ENST00000472056 TMCC3Q9ULS5 477 aa13.83□□□□□ -0.19
COL6A3-209ENST00000472056 TSPAN9O75954 239 aa13.83□□□□□ -0.2
COL6A3-209ENST00000472056 TMEM253P0C7T8 217 aa13.83□□□□□ -0.2
COL6A3-209ENST00000472056 JAK1P23458 1154 aa13.83□□□□□ -0.2
COL6A3-209ENST00000472056 UNC45BQ8IWX7 931 aa13.83□□□□□ -0.2
COL6A3-209ENST00000472056 GSPT2Q8IYD1 628 aaKnown RBP13.83□□□□□ -0.2
COL6A3-209ENST00000472056 ATPAF2Q8N5M1 289 aa13.83□□□□□ -0.2
COL6A3-209ENST00000472056 ZNF862O60290 1169 aa13.83□□□□□ -0.2
COL6A3-209ENST00000472056 ALOX5P09917 674 aa13.83□□□□□ -0.2
COL6A3-209ENST00000472056 FMO5P49326 533 aa13.83□□□□□ -0.2
COL6A3-209ENST00000472056 TFDP3Q5H9I0 405 aa13.83□□□□□ -0.2
COL6A3-209ENST00000472056 KCNT1Q5JUK3 1230 aa13.83□□□□□ -0.2
COL6A3-209ENST00000472056 TJP2Q9UDY2 1190 aa13.83□□□□□ -0.2
COL6A3-209ENST00000472056 COMMD3-BMI1R4GMX3 469 aa13.83□□□□□ -0.2
COL6A3-209ENST00000472056 H3BMM5 538 aa13.83□□□□□ -0.2
COL6A3-209ENST00000472056 VWA5AO00534 786 aa13.83□□□□□ -0.2
COL6A3-209ENST00000472056 NUDT2P50583 147 aa13.83□□□□□ -0.2
COL6A3-209ENST00000472056 PSMC5P62195 406 aa13.83□□□□□ -0.2
COL6A3-209ENST00000472056 RGS21Q2M5E4 152 aa13.83□□□□□ -0.2
COL6A3-209ENST00000472056 DPP10Q8N608 796 aa13.83□□□□□ -0.2
COL6A3-209ENST00000472056 PDCD10Q9BUL8 212 aa13.83□□□□□ -0.2
COL6A3-209ENST00000472056 INTS2Q9H0H0 1204 aaKnown RBP13.83□□□□□ -0.2
COL6A3-209ENST00000472056 RAB6BQ9NRW1 208 aa13.83□□□□□ -0.2
COL6A3-209ENST00000472056 COMMD8Q9NX08 183 aa13.83□□□□□ -0.2
COL6A3-209ENST00000472056 EIF3LQ9Y262 564 aaKnown RBP13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms