RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 UAP1L1Q3KQV9 507 aa5.84□□□□□ -1.47
PTPN4-209ENST00000469511 NOTUMQ6P988 496 aa5.84□□□□□ -1.47
PTPN4-209ENST00000469511 DNAJC14Q6Y2X3 702 aaPredicted RBP5.84□□□□□ -1.47
PTPN4-209ENST00000469511 PRICKLE2Q7Z3G6 844 aa5.84□□□□□ -1.47
PTPN4-209ENST00000469511 CACNA2D4Q7Z3S7 1137 aa5.84□□□□□ -1.47
PTPN4-209ENST00000469511 NOSTRINQ8IVI9 506 aa5.84□□□□□ -1.47
PTPN4-209ENST00000469511 MFSD6LQ8IWD5 586 aa5.84□□□□□ -1.47
PTPN4-209ENST00000469511 ZNF461Q8TAF7 563 aa5.84□□□□□ -1.47
PTPN4-209ENST00000469511 TBCKQ8TEA7 893 aa5.84□□□□□ -1.47
PTPN4-209ENST00000469511 SMARCD2Q92925 531 aa5.84□□□□□ -1.47
PTPN4-209ENST00000469511 LOXL4Q96JB6 756 aa5.84□□□□□ -1.47
PTPN4-209ENST00000469511 ZC3H10Q96K80 434 aaKnown RBP5.84□□□□□ -1.47
PTPN4-209ENST00000469511 HHIPQ96QV1 700 aa5.84□□□□□ -1.47
PTPN4-209ENST00000469511 IER2Q9BTL4 223 aa5.84□□□□□ -1.47
PTPN4-209ENST00000469511 LRRC3Q9BY71 257 aa5.84□□□□□ -1.47
PTPN4-209ENST00000469511 CRISPLD1Q9H336 500 aa5.84□□□□□ -1.47
PTPN4-209ENST00000469511 CYP4F11Q9HBI6 524 aa5.84□□□□□ -1.47
PTPN4-209ENST00000469511 POLD4Q9HCU8 107 aa5.84□□□□□ -1.47
PTPN4-209ENST00000469511 ATP13A2Q9NQ11 1180 aa5.84□□□□□ -1.47
PTPN4-209ENST00000469511 FSCN3Q9NQT6 498 aa5.84□□□□□ -1.47
PTPN4-209ENST00000469511 VPS45Q9NRW7 570 aa5.84□□□□□ -1.47
PTPN4-209ENST00000469511 RBM28Q9NW13 759 aaKnown RBP5.84□□□□□ -1.47
PTPN4-209ENST00000469511 VPS54Q9P1Q0 977 aa5.84□□□□□ -1.47
PTPN4-209ENST00000469511 VAV3Q9UKW4 847 aa5.84□□□□□ -1.47
PTPN4-209ENST00000469511 KLF18A0A0U1RQI7 1052 aa5.83□□□□□ -1.48
PTPN4-209ENST00000469511 A0A1B0GTH6 734 aa5.83□□□□□ -1.48
PTPN4-209ENST00000469511 A0A1B0GUA9 196 aa5.83□□□□□ -1.48
PTPN4-209ENST00000469511 BCLAF3A2AJT9 711 aaKnown RBP5.83□□□□□ -1.48
PTPN4-209ENST00000469511 TMEM8BA6NDV4 472 aa5.83□□□□□ -1.48
PTPN4-209ENST00000469511 hCG_1984214I3L0E3 225 aa5.83□□□□□ -1.48
PTPN4-209ENST00000469511 TBX3O15119 743 aa5.83□□□□□ -1.48
PTPN4-209ENST00000469511 MEFVO15553 781 aaPredicted RBP5.83□□□□□ -1.48
PTPN4-209ENST00000469511 FOXD2O60548 495 aaPredicted RBP5.83□□□□□ -1.48
PTPN4-209ENST00000469511 RECQL4O94761 1208 aa5.83□□□□□ -1.48
PTPN4-209ENST00000469511 CAVIN2O95810 425 aa5.83□□□□□ -1.48
PTPN4-209ENST00000469511 LRG1P02750 347 aa5.83□□□□□ -1.48
PTPN4-209ENST00000469511 BCKDHBP21953 392 aa5.83□□□□□ -1.48
PTPN4-209ENST00000469511 MPSTP25325 297 aa5.83□□□□□ -1.48
PTPN4-209ENST00000469511 AXLP30530 894 aa5.83□□□□□ -1.48
PTPN4-209ENST00000469511 HOXA6P31267 233 aa5.83□□□□□ -1.48
PTPN4-209ENST00000469511 QARSP47897 775 aaKnown RBP5.83□□□□□ -1.48
PTPN4-209ENST00000469511 MARSP56192 900 aaKnown RBP5.83□□□□□ -1.48
PTPN4-209ENST00000469511 CREMQ03060 361 aa5.83□□□□□ -1.48
PTPN4-209ENST00000469511 NPY5RQ15761 445 aa5.83□□□□□ -1.48
PTPN4-209ENST00000469511 NTRK3Q16288 839 aa5.83□□□□□ -1.48
PTPN4-209ENST00000469511 HIF1AQ16665 826 aa5.83□□□□□ -1.48
PTPN4-209ENST00000469511 Q4G0T1 1027 aa5.83□□□□□ -1.48
PTPN4-209ENST00000469511 XKR9Q5GH70 373 aa5.83□□□□□ -1.48
PTPN4-209ENST00000469511 FSTL4Q6MZW2 842 aa5.83□□□□□ -1.48
PTPN4-209ENST00000469511 ALKBH2Q6NS38 261 aa5.83□□□□□ -1.48
PTPN4-209ENST00000469511 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.83□□□□□ -1.48
PTPN4-209ENST00000469511 PDZD4Q76G19 769 aaPredicted RBP5.83□□□□□ -1.48
PTPN4-209ENST00000469511 MAEAQ7L5Y9 396 aa5.83□□□□□ -1.48
PTPN4-209ENST00000469511 PROSER1Q86XN7 944 aa5.83□□□□□ -1.48
PTPN4-209ENST00000469511 CHCHD4Q8N4Q1 142 aa5.83□□□□□ -1.48
PTPN4-209ENST00000469511 ZNF713Q8N859 430 aaPredicted RBP5.83□□□□□ -1.48
PTPN4-209ENST00000469511 FRMD1Q8N878 549 aa5.83□□□□□ -1.48
PTPN4-209ENST00000469511 RDM1Q8NG50 284 aa5.83□□□□□ -1.48
PTPN4-209ENST00000469511 HNRNPLLQ8WVV9 542 aaKnown RBP5.83□□□□□ -1.48
PTPN4-209ENST00000469511 RUFY2Q8WXA3 655 aa5.83□□□□□ -1.48
PTPN4-209ENST00000469511 SLC7A3Q8WY07 619 aa5.83□□□□□ -1.48
PTPN4-209ENST00000469511 EZH1Q92800 747 aaPredicted RBP5.83□□□□□ -1.48
PTPN4-209ENST00000469511 DYDC2Q96IM9 177 aa5.83□□□□□ -1.48
PTPN4-209ENST00000469511 TRIM6Q9C030 488 aaPredicted RBP5.83□□□□□ -1.48
PTPN4-209ENST00000469511 SMG9Q9H0W8 520 aaKnown RBP5.83□□□□□ -1.48
PTPN4-209ENST00000469511 C6orf50Q9HD87 102 aa5.83□□□□□ -1.48
PTPN4-209ENST00000469511 TIMMDC1Q9NPL8 285 aa5.83□□□□□ -1.48
PTPN4-209ENST00000469511 GPRC5CQ9NQ84 441 aa5.83□□□□□ -1.48
PTPN4-209ENST00000469511 DNMT3LQ9UJW3 386 aa5.83□□□□□ -1.48
PTPN4-209ENST00000469511 MSRB2Q9Y3D2 182 aa5.83□□□□□ -1.48
PTPN4-209ENST00000469511 INSL5Q9Y5Q6 135 aa5.83□□□□□ -1.48
PTPN4-209ENST00000469511 CELSR3Q9NYQ7 3312 aa5.83□□□□□ -1.48
PTPN4-209ENST00000469511 CYP3A7-CYP3A51PA0A087WV96 503 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 PRRG1O14668 218 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 CHADO15335 359 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 ST8SIA5O15466 376 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 ASAP2O43150 1006 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 PRPF3O43395 683 aaKnown RBP5.82□□□□□ -1.48
PTPN4-209ENST00000469511 B3GAT3O94766 335 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 PRAMEF12O95522 483 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 EGFP01133 1207 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 THP07101 528 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 OR4Q2P0C623 313 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 CEACAM1P13688 526 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 ATF2P15336 505 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 CYP3A7P24462 503 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 YWHABP31946 246 aaKnown RBP5.82□□□□□ -1.48
PTPN4-209ENST00000469511 ARL2P36404 184 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 USP11P51784 963 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 FGD1P98174 961 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 CYP4A11Q02928 519 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 SPIRE1Q08AE8 756 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 FCHO2Q0JRZ9 810 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 SCAPQ12770 1279 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 TWF1Q12792 350 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 LRRC32Q14392 662 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 ZNF800Q2TB10 664 aaPredicted RBP eCLIP5.82□□□□□ -1.48
PTPN4-209ENST00000469511 DGKKQ5KSL6 1271 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 TRIM68Q6AZZ1 485 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 SLC8B1Q6J4K2 584 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms