RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 ZSCAN16Q9H4T2 348 aaPredicted RBP26.4■■□□□ 1.82
PTCH1-210ENST00000468211 PCIF1Q9H4Z3 704 aa26.4■■□□□ 1.82
PTCH1-210ENST00000468211 PRMT8Q9NR22 394 aaPredicted RBP26.4■■□□□ 1.82
PTCH1-210ENST00000468211 RBAKQ9NYW8 714 aaPredicted RBP26.4■■□□□ 1.82
PTCH1-210ENST00000468211 AGAP1Q9UPQ3 857 aa26.4■■□□□ 1.82
PTCH1-210ENST00000468211 K7ELQ4 463 aaPredicted RBP26.39■■□□□ 1.82
PTCH1-210ENST00000468211 KINO60870 393 aaKnown RBP26.39■■□□□ 1.82
PTCH1-210ENST00000468211 PRAMEF12O95522 483 aa26.39■■□□□ 1.82
PTCH1-210ENST00000468211 ITGB3P05106 788 aa26.39■■□□□ 1.82
PTCH1-210ENST00000468211 HAPLN1P10915 354 aaPredicted RBP26.39■■□□□ 1.82
PTCH1-210ENST00000468211 GARTP22102 1010 aa26.39■■□□□ 1.82
PTCH1-210ENST00000468211 CCNE1P24864 410 aa26.39■■□□□ 1.82
PTCH1-210ENST00000468211 YAF2Q8IY57 180 aa26.39■■□□□ 1.82
PTCH1-210ENST00000468211 KIAA2013Q8IYS2 634 aa26.39■■□□□ 1.82
PTCH1-210ENST00000468211 ZBTB44Q8NCP5 570 aa26.39■■□□□ 1.82
PTCH1-210ENST00000468211 LINC00301Q8NCQ3 95 aa26.39■■□□□ 1.82
PTCH1-210ENST00000468211 ZFYVE19Q96K21 471 aa26.39■■□□□ 1.82
PTCH1-210ENST00000468211 LMAN1LQ9HAT1 526 aa26.39■■□□□ 1.82
PTCH1-210ENST00000468211 ABI2Q9NYB9 513 aaPredicted RBP26.39■■□□□ 1.82
PTCH1-210ENST00000468211 TFIP11Q9UBB9 837 aaKnown RBP26.39■■□□□ 1.82
PTCH1-210ENST00000468211 SLC38A8A6NNN8 435 aa26.38■■□□□ 1.81
PTCH1-210ENST00000468211 CHADO15335 359 aa26.38■■□□□ 1.81
PTCH1-210ENST00000468211 STK38Q15208 465 aa26.38■■□□□ 1.81
PTCH1-210ENST00000468211 WDR44Q5JSH3 913 aa26.38■■□□□ 1.81
PTCH1-210ENST00000468211 PDCL2Q8N4E4 241 aa26.38■■□□□ 1.81
PTCH1-210ENST00000468211 STKLD1Q8NE28 680 aa26.38■■□□□ 1.81
PTCH1-210ENST00000468211 TTC8Q8TAM2 541 aa26.38■■□□□ 1.81
PTCH1-210ENST00000468211 SPPL2BQ8TCT7 592 aa26.38■■□□□ 1.81
PTCH1-210ENST00000468211 NOC3LQ8WTT2 800 aaKnown RBP26.38■■□□□ 1.81
PTCH1-210ENST00000468211 ZNF560Q96MR9 790 aa26.38■■□□□ 1.81
PTCH1-210ENST00000468211 SMG9Q9H0W8 520 aaKnown RBP26.38■■□□□ 1.81
PTCH1-210ENST00000468211 PDE11AQ9HCR9 933 aa26.38■■□□□ 1.81
PTCH1-210ENST00000468211 L1RE1Q9UN81 338 aa26.38■■□□□ 1.81
PTCH1-210ENST00000468211 PCDHGA2Q9Y5H1 932 aa26.38■■□□□ 1.81
PTCH1-210ENST00000468211 EXTL3O43909 919 aa26.37■■□□□ 1.81
PTCH1-210ENST00000468211 FGF19O95750 216 aa26.37■■□□□ 1.81
PTCH1-210ENST00000468211 CHRNB1P11230 501 aa26.37■■□□□ 1.81
PTCH1-210ENST00000468211 TDGF1P13385 188 aa26.37■■□□□ 1.81
PTCH1-210ENST00000468211 ID4P47928 161 aa26.37■■□□□ 1.81
PTCH1-210ENST00000468211 GPR15P49685 360 aa26.37■■□□□ 1.81
PTCH1-210ENST00000468211 ALCAMQ13740 583 aa26.37■■□□□ 1.81
PTCH1-210ENST00000468211 E2F4Q16254 413 aa26.37■■□□□ 1.81
PTCH1-210ENST00000468211 TMEM150AQ86TG1 271 aa26.37■■□□□ 1.81
PTCH1-210ENST00000468211 C2orf15Q8WU43 125 aaKnown RBP26.37■■□□□ 1.81
PTCH1-210ENST00000468211 RUBCNQ92622 972 aa26.37■■□□□ 1.81
PTCH1-210ENST00000468211 ZSCAN32Q9NX65 697 aa26.37■■□□□ 1.81
PTCH1-210ENST00000468211 LILRB5O75023 590 aa26.36■■□□□ 1.81
PTCH1-210ENST00000468211 LDHAP00338 332 aaKnown RBP26.36■■□□□ 1.81
PTCH1-210ENST00000468211 HOXD13P35453 343 aa26.36■■□□□ 1.81
PTCH1-210ENST00000468211 PNPLA4P41247 253 aa26.36■■□□□ 1.81
PTCH1-210ENST00000468211 GAS6Q14393 721 aa26.36■■□□□ 1.81
PTCH1-210ENST00000468211 VEPH1Q14D04 833 aa26.36■■□□□ 1.81
PTCH1-210ENST00000468211 CCDC142Q17RM4 750 aa26.36■■□□□ 1.81
PTCH1-210ENST00000468211 ARHGAP15Q53QZ3 475 aa26.36■■□□□ 1.81
PTCH1-210ENST00000468211 TXNDC11Q6PKC3 985 aa26.36■■□□□ 1.81
PTCH1-210ENST00000468211 CSGALNACT2Q8N6G5 542 aa26.36■■□□□ 1.81
PTCH1-210ENST00000468211 CSGALNACT1Q8TDX6 532 aa26.36■■□□□ 1.81
PTCH1-210ENST00000468211 ATRIPQ8WXE1 791 aa26.36■■□□□ 1.81
PTCH1-210ENST00000468211 HINFPQ9BQA5 517 aa26.36■■□□□ 1.81
PTCH1-210ENST00000468211 SLC46A2Q9BY10 475 aa26.36■■□□□ 1.81
PTCH1-210ENST00000468211 TASP1Q9H6P5 420 aa26.36■■□□□ 1.81
PTCH1-210ENST00000468211 GTSE1Q9NYZ3 720 aa26.36■■□□□ 1.81
PTCH1-210ENST00000468211 SIX4Q9UIU6 781 aa26.36■■□□□ 1.81
PTCH1-210ENST00000468211 CEP250Q9BV73 2442 aa26.36■■□□□ 1.81
PTCH1-210ENST00000468211 PTPRJQ12913 1337 aa26.36■■□□□ 1.81
PTCH1-210ENST00000468211 HCRTO43612 131 aa26.35■■□□□ 1.81
PTCH1-210ENST00000468211 HMGA1P17096 107 aaKnown RBP26.35■■□□□ 1.81
PTCH1-210ENST00000468211 MLLT6P55198 1093 aaPredicted RBP26.35■■□□□ 1.81
PTCH1-210ENST00000468211 SMARCB1Q12824 385 aa26.35■■□□□ 1.81
PTCH1-210ENST00000468211 BFSP1Q12934 665 aa26.35■■□□□ 1.81
PTCH1-210ENST00000468211 SDHAF4Q5VUM1 108 aa26.35■■□□□ 1.81
PTCH1-210ENST00000468211 LMBRD2Q68DH5 695 aaPredicted RBP26.35■■□□□ 1.81
PTCH1-210ENST00000468211 OSTM1Q86WC4 334 aa26.35■■□□□ 1.81
PTCH1-210ENST00000468211 CCDC65Q8IXS2 484 aa26.35■■□□□ 1.81
PTCH1-210ENST00000468211 DCP1BQ8IZD4 617 aaKnown RBP26.35■■□□□ 1.81
PTCH1-210ENST00000468211 PI4K2AQ9BTU6 479 aa26.35■■□□□ 1.81
PTCH1-210ENST00000468211 MTMR12Q9C0I1 747 aa26.35■■□□□ 1.81
PTCH1-210ENST00000468211 RBM12Q9NTZ6 932 aaKnown RBP26.35■■□□□ 1.81
PTCH1-210ENST00000468211 KBTBD4Q9NVX7 518 aa26.35■■□□□ 1.81
PTCH1-210ENST00000468211 PCDHB5Q9Y5E4 795 aa26.35■■□□□ 1.81
PTCH1-210ENST00000468211 DPYSL4O14531 572 aa26.34■■□□□ 1.81
PTCH1-210ENST00000468211 SPTLC2O15270 562 aa26.34■■□□□ 1.81
PTCH1-210ENST00000468211 ACAT1P24752 427 aaKnown RBP26.34■■□□□ 1.81
PTCH1-210ENST00000468211 CDC25CP30307 473 aa26.34■■□□□ 1.81
PTCH1-210ENST00000468211 KPNA1P52294 538 aaPredicted RBP26.34■■□□□ 1.81
PTCH1-210ENST00000468211 TNK2Q07912 1038 aa26.34■■□□□ 1.81
PTCH1-210ENST00000468211 MAMSTRQ6ZN01 415 aa26.34■■□□□ 1.81
PTCH1-210ENST00000468211 GPD1LQ8N335 351 aa26.34■■□□□ 1.81
PTCH1-210ENST00000468211 CACTINQ8WUQ7 758 aaKnown RBP26.34■■□□□ 1.81
PTCH1-210ENST00000468211 PKMYT1Q99640 499 aa26.34■■□□□ 1.81
PTCH1-210ENST00000468211 TMEM206Q9H813 350 aa26.34■■□□□ 1.81
PTCH1-210ENST00000468211 OBP2AQ9NY56 170 aa26.34■■□□□ 1.81
PTCH1-210ENST00000468211 GREB1Q4ZG55 1949 aa26.33■■□□□ 1.81
PTCH1-210ENST00000468211 F11P03951 625 aa26.33■■□□□ 1.81
PTCH1-210ENST00000468211 WEE1P30291 646 aa26.33■■□□□ 1.81
PTCH1-210ENST00000468211 NLRP12P59046 1061 aa26.33■■□□□ 1.81
PTCH1-210ENST00000468211 ARHGAP29Q52LW3 1261 aa26.33■■□□□ 1.81
PTCH1-210ENST00000468211 FOXD4L5Q5VV16 416 aaPredicted RBP26.33■■□□□ 1.81
PTCH1-210ENST00000468211 LRRC52Q8N7C0 313 aa26.33■■□□□ 1.81
PTCH1-210ENST00000468211 OR5B17Q8NGF7 314 aa26.33■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms