RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 BTG3Q14201 252 aaPredicted RBP6.36□□□□□ -1.39
USP39-213ENST00000467885 SV2CQ496J9 727 aa6.36□□□□□ -1.39
USP39-213ENST00000467885 SFMBT2Q5VUG0 894 aa6.36□□□□□ -1.39
USP39-213ENST00000467885 FAM171BQ6P995 826 aa6.36□□□□□ -1.39
USP39-213ENST00000467885 NUDT18Q6ZVK8 323 aa6.36□□□□□ -1.39
USP39-213ENST00000467885 PAQR9Q6ZVX9 377 aa6.36□□□□□ -1.39
USP39-213ENST00000467885 CACNA2D4Q7Z3S7 1137 aa6.36□□□□□ -1.39
USP39-213ENST00000467885 ZNF571Q7Z3V5 609 aaPredicted RBP6.36□□□□□ -1.39
USP39-213ENST00000467885 LRRTM3Q86VH5 581 aa6.36□□□□□ -1.39
USP39-213ENST00000467885 UNC93AQ86WB7 457 aa6.36□□□□□ -1.39
USP39-213ENST00000467885 OSTM1Q86WC4 334 aa6.36□□□□□ -1.39
USP39-213ENST00000467885 TMEM173Q86WV6 379 aaPredicted RBP6.36□□□□□ -1.39
USP39-213ENST00000467885 RNF168Q8IYW5 571 aaPredicted RBP6.36□□□□□ -1.39
USP39-213ENST00000467885 TOP6BLQ8N6T0 577 aa6.36□□□□□ -1.39
USP39-213ENST00000467885 SLC4A11Q8NBS3 891 aa6.36□□□□□ -1.39
USP39-213ENST00000467885 CCDC150Q8NCX0 1101 aa6.36□□□□□ -1.39
USP39-213ENST00000467885 ZNF606Q8WXB4 792 aa6.36□□□□□ -1.39
USP39-213ENST00000467885 TFAP2BQ92481 460 aa6.36□□□□□ -1.39
USP39-213ENST00000467885 IGSF21Q96ID5 467 aa6.36□□□□□ -1.39
USP39-213ENST00000467885 FAM193BQ96PV7 902 aaPredicted RBP6.36□□□□□ -1.39
USP39-213ENST00000467885 TWNKQ96RR1 684 aa6.36□□□□□ -1.39
USP39-213ENST00000467885 PCDHB18PQ96TA0 734 aa6.36□□□□□ -1.39
USP39-213ENST00000467885 VN1R3Q9BXE9 311 aa6.36□□□□□ -1.39
USP39-213ENST00000467885 MRPL9Q9BYD2 267 aaKnown RBP6.36□□□□□ -1.39
USP39-213ENST00000467885 NUCKS1Q9H1E3 243 aaKnown RBP6.36□□□□□ -1.39
USP39-213ENST00000467885 KCNF1Q9H3M0 494 aa6.36□□□□□ -1.39
USP39-213ENST00000467885 FAM124BQ9H5Z6 455 aaPredicted RBP6.36□□□□□ -1.39
USP39-213ENST00000467885 SMYD3Q9H7B4 428 aa6.36□□□□□ -1.39
USP39-213ENST00000467885 ABHD10Q9NUJ1 306 aa6.36□□□□□ -1.39
USP39-213ENST00000467885 KIAA1257Q9ULG3 409 aa6.36□□□□□ -1.39
USP39-213ENST00000467885 BARX2Q9UMQ3 279 aaPredicted RBP6.36□□□□□ -1.39
USP39-213ENST00000467885 STXBP5LQ9Y2K9 1186 aa6.36□□□□□ -1.39
USP39-213ENST00000467885 R3HCC1Q9Y3T6 440 aaKnown RBP6.36□□□□□ -1.39
USP39-213ENST00000467885 MRPL42Q9Y6G3 142 aaKnown RBP6.36□□□□□ -1.39
USP39-213ENST00000467885 TTC3P53804 2025 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 HSFX4A0A1B0GTS1 333 aaPredicted RBP6.35□□□□□ -1.39
USP39-213ENST00000467885 HSFX3A0A1B0GWH4 333 aaPredicted RBP6.35□□□□□ -1.39
USP39-213ENST00000467885 DDX3XO00571 662 aaKnown RBP eCLIP6.35□□□□□ -1.39
USP39-213ENST00000467885 HCRTO43612 131 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 TLL1O43897 1013 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 HUS1O60921 280 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 SERPING1P05155 500 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 PLEKP08567 350 aaPredicted RBP6.35□□□□□ -1.39
USP39-213ENST00000467885 P4HA1P13674 534 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 CYP11B1P15538 503 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 FERP16591 822 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 PTPN1P18031 435 aaKnown RBP6.35□□□□□ -1.39
USP39-213ENST00000467885 CD58P19256 250 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 TYMPP19971 482 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 DEKP35659 375 aaKnown RBP6.35□□□□□ -1.39
USP39-213ENST00000467885 EIF4A3P38919 411 aaKnown RBP6.35□□□□□ -1.39
USP39-213ENST00000467885 LHX1P48742 406 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 BPIFB4P59827 614 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 CCZ1BP86790 482 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 CCZ1P86791 482 aaPredicted RBP6.35□□□□□ -1.39
USP39-213ENST00000467885 PLCB3Q01970 1234 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 ARID5AQ03989 594 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 CNGA2Q16280 664 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 ZNF394Q53GI3 561 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 FAM171A1Q5VUB5 890 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 TMEM270Q6UE05 265 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 RSPO2Q6UXX9 243 aaPredicted RBP6.35□□□□□ -1.39
USP39-213ENST00000467885 RAD9BQ6WBX8 426 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 DSTYKQ6XUX3 929 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 DDX53Q86TM3 631 aaKnown RBP6.35□□□□□ -1.39
USP39-213ENST00000467885 SLC47A2Q86VL8 602 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 TMTC1Q8IUR5 882 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 CNGA4Q8IV77 575 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 SLC39A11Q8N1S5 342 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 TMEM86AQ8N2M4 240 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 FIBCD1Q8N539 461 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 TTC39CQ8N584 583 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 C12orf29Q8N999 325 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 COLGALT1Q8NBJ5 622 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 APPL2Q8NEU8 664 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 LNX1Q8TBB1 728 aaPredicted RBP6.35□□□□□ -1.39
USP39-213ENST00000467885 SPPL3Q8TCT6 385 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 HASPINQ8TF76 798 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 TMEM176AQ96HP8 235 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 SPAG5Q96R06 1193 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 SLC9A7Q96T83 725 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 YME1L1Q96TA2 773 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 PKMYT1Q99640 499 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 BAG1Q99933 345 aaPredicted RBP6.35□□□□□ -1.39
USP39-213ENST00000467885 AGPAT1Q99943 283 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 ACBD6Q9BR61 282 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 IMPG2Q9BZV3 1241 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 UBE2OQ9C0C9 1292 aaKnown RBP6.35□□□□□ -1.39
USP39-213ENST00000467885 HAUS4Q9H6D7 363 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 NHEJ1Q9H9Q4 299 aaPredicted RBP6.35□□□□□ -1.39
USP39-213ENST00000467885 SPG21Q9NZD8 308 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 HMGXB4Q9UGU5 601 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 NOCTQ9UK39 431 aaKnown RBP6.35□□□□□ -1.39
USP39-213ENST00000467885 ADAM28Q9UKQ2 775 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 PRG3Q9Y2Y8 225 aaPredicted RBP6.35□□□□□ -1.39
USP39-213ENST00000467885 PCDHB4Q9Y5E5 795 aa6.35□□□□□ -1.39
USP39-213ENST00000467885 BZW2Q9Y6E2 419 aaKnown RBP6.35□□□□□ -1.39
USP39-213ENST00000467885 EPN1Q9Y6I3 576 aaPredicted RBP6.35□□□□□ -1.39
USP39-213ENST00000467885 SCN5AQ14524 2016 aa6.34□□□□□ -1.39
USP39-213ENST00000467885 A0A087X0T9 212 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms