RNA–Protein interactions for RNA: ENST00000463041.1

PTPRF-210, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 298 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-210ENST00000463041 CXorf38Q8TB03 319 aa7.84□□□□□ -1.15
PTPRF-210ENST00000463041 SHKBP1Q8TBC3 707 aa7.84□□□□□ -1.15
PTPRF-210ENST00000463041 ZSCAN18Q8TBC5 510 aaPredicted RBP7.84□□□□□ -1.15
PTPRF-210ENST00000463041 ANKRD36BP1Q96IX9 119 aa7.84□□□□□ -1.15
PTPRF-210ENST00000463041 BCO2Q9BYV7 579 aa7.84□□□□□ -1.15
PTPRF-210ENST00000463041 BRD9Q9H8M2 597 aa7.84□□□□□ -1.15
PTPRF-210ENST00000463041 INTS13Q9NVM9 706 aa7.84□□□□□ -1.15
PTPRF-210ENST00000463041 HSPBP1Q9NZL4 362 aa7.84□□□□□ -1.15
PTPRF-210ENST00000463041 USP25Q9UHP3 1055 aa7.84□□□□□ -1.15
PTPRF-210ENST00000463041 ZMYM5Q9UJ78 669 aa7.84□□□□□ -1.15
PTPRF-210ENST00000463041 PCDHB5Q9Y5E4 795 aa7.84□□□□□ -1.15
PTPRF-210ENST00000463041 SPTBN4Q9H254 2564 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 UBE4BO95155 1302 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 A0A1W2PRU2 124 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 SOBPA7XYQ1 873 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 HEPACAM2A8MVW5 462 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 GABRDO14764 452 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 ZNF263O14978 683 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 TGFB1I1O43294 461 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 GFRA3O60609 400 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 PRPF40AO75400 957 aaKnown RBP7.83□□□□□ -1.16
PTPRF-210ENST00000463041 TNNC2P02585 160 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 KRT19P08727 400 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 GJA1P17302 382 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 CMA1P23946 247 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 GABRR2P28476 465 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 PCSK1P29120 753 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 CDC25CP30307 473 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 GDI1P31150 447 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 VIPR2P41587 438 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 WNT7BP56706 349 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 MYL7Q01449 175 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 DNM1Q05193 864 aaKnown RBP7.83□□□□□ -1.16
PTPRF-210ENST00000463041 BFSP1Q12934 665 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 UBXN2BQ14CS0 331 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 TEAD2Q15562 447 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 MGAT5BQ3V5L5 792 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 ARHGAP15Q53QZ3 475 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 GAREM2Q75VX8 874 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 HS2ST1Q7LGA3 356 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 ARID3BQ8IVW6 561 aaPredicted RBP7.83□□□□□ -1.16
PTPRF-210ENST00000463041 C12orf56Q8IXR9 622 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 PDCL2Q8N4E4 241 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 TOP6BLQ8N6T0 577 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 XXYLT1Q8NBI6 393 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 SPRYD3Q8NCJ5 442 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 GLIS3Q8NEA6 775 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 FAM200AQ8TCP9 573 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 NOC3LQ8WTT2 800 aaKnown RBP7.83□□□□□ -1.16
PTPRF-210ENST00000463041 LEO1Q8WVC0 666 aaPredicted RBP7.83□□□□□ -1.16
PTPRF-210ENST00000463041 SCFD1Q8WVM8 642 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 HPS3Q969F9 1004 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 CLDN23Q96B33 292 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 FOXQ1Q9C009 403 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 ATXN3LQ9H3M9 355 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 SLITRK6Q9H5Y7 841 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 TASP1Q9H6P5 420 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 ZNF334Q9HCZ1 680 aaPredicted RBP7.83□□□□□ -1.16
PTPRF-210ENST00000463041 ABCB6Q9NP58 842 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 LTB4R2Q9NPC1 389 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 AGPAT3Q9NRZ7 376 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 OBP2AQ9NY56 170 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 SIX4Q9UIU6 781 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 GTF3C3Q9Y5Q9 886 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 SNX9Q9Y5X1 595 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 ATG2BQ96BY7 2078 aa7.83□□□□□ -1.16
PTPRF-210ENST00000463041 FRYLO94915 3013 aa7.82□□□□□ -1.16
PTPRF-210ENST00000463041 NRG2O14511 850 aaPredicted RBP7.82□□□□□ -1.16
PTPRF-210ENST00000463041 DPYSL4O14531 572 aa7.82□□□□□ -1.16
PTPRF-210ENST00000463041 CLIC2O15247 247 aa7.82□□□□□ -1.16
PTPRF-210ENST00000463041 CHADO15335 359 aa7.82□□□□□ -1.16
PTPRF-210ENST00000463041 SOAT2O75908 522 aa7.82□□□□□ -1.16
PTPRF-210ENST00000463041 MYL1P05976 194 aa7.82□□□□□ -1.16
PTPRF-210ENST00000463041 CSH1P0DML2 217 aa7.82□□□□□ -1.16
PTPRF-210ENST00000463041 CSH2P0DML3 217 aa7.82□□□□□ -1.16
PTPRF-210ENST00000463041 TNNI1P19237 187 aa7.82□□□□□ -1.16
PTPRF-210ENST00000463041 CD72P21854 359 aa7.82□□□□□ -1.16
PTPRF-210ENST00000463041 DDX6P26196 483 aaKnown RBP eCLIP7.82□□□□□ -1.16
PTPRF-210ENST00000463041 AFMP43652 599 aa7.82□□□□□ -1.16
PTPRF-210ENST00000463041 RPS9P46781 194 aaKnown RBP7.82□□□□□ -1.16
PTPRF-210ENST00000463041 RPL10AP62906 217 aaKnown RBP7.82□□□□□ -1.16
PTPRF-210ENST00000463041 CUL4BQ13620 913 aa7.82□□□□□ -1.16
PTPRF-210ENST00000463041 PKP1Q13835 747 aa7.82□□□□□ -1.16
PTPRF-210ENST00000463041 GRM2Q14416 872 aa7.82□□□□□ -1.16
PTPRF-210ENST00000463041 PSMD6Q15008 389 aa7.82□□□□□ -1.16
PTPRF-210ENST00000463041 SNRNP35Q16560 246 aaKnown RBP7.82□□□□□ -1.16
PTPRF-210ENST00000463041 KNOP1Q1ED39 458 aaKnown RBP7.82□□□□□ -1.16
PTPRF-210ENST00000463041 BMT2Q1RMZ1 405 aa7.82□□□□□ -1.16
PTPRF-210ENST00000463041 SOWAHAQ2M3V2 549 aa7.82□□□□□ -1.16
PTPRF-210ENST00000463041 ZNF528Q3MIS6 628 aa7.82□□□□□ -1.16
PTPRF-210ENST00000463041 GPR158Q5T848 1215 aa7.82□□□□□ -1.16
PTPRF-210ENST00000463041 FAM171BQ6P995 826 aa7.82□□□□□ -1.16
PTPRF-210ENST00000463041 C1orf228Q6PIY5 440 aa7.82□□□□□ -1.16
PTPRF-210ENST00000463041 VITQ6UXI7 678 aa7.82□□□□□ -1.16
PTPRF-210ENST00000463041 MAMSTRQ6ZN01 415 aa7.82□□□□□ -1.16
PTPRF-210ENST00000463041 TPRG1Q6ZUI0 275 aa7.82□□□□□ -1.16
PTPRF-210ENST00000463041 TRAPPC11Q7Z392 1133 aa7.82□□□□□ -1.16
PTPRF-210ENST00000463041 LIMS2Q7Z4I7 341 aa7.82□□□□□ -1.16
PTPRF-210ENST00000463041 FRMD5Q7Z6J6 570 aa7.82□□□□□ -1.16
PTPRF-210ENST00000463041 CBWD2Q8IUF1 395 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms