RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 POMGNT1Q8WZA1 660 aa14.35□□□□□ -0.11
HMGB3-204ENST00000448905 DDX1Q92499 740 aaKnown RBP14.35□□□□□ -0.11
HMGB3-204ENST00000448905 ZFYVE19Q96K21 471 aa14.35□□□□□ -0.11
HMGB3-204ENST00000448905 TMEM209Q96SK2 561 aa14.35□□□□□ -0.11
HMGB3-204ENST00000448905 SLC46A2Q9BY10 475 aa14.35□□□□□ -0.11
HMGB3-204ENST00000448905 SEMA4GQ9NTN9 838 aa14.35□□□□□ -0.11
HMGB3-204ENST00000448905 RBM12Q9NTZ6 932 aaKnown RBP14.35□□□□□ -0.11
HMGB3-204ENST00000448905 BLOC1S4Q9NUP1 217 aa14.35□□□□□ -0.11
HMGB3-204ENST00000448905 R3HCC1Q9Y3T6 440 aaKnown RBP14.35□□□□□ -0.11
HMGB3-204ENST00000448905 PCDHB5Q9Y5E4 795 aa14.35□□□□□ -0.11
HMGB3-204ENST00000448905 STYXL1Q9Y6J8 313 aa14.35□□□□□ -0.11
HMGB3-204ENST00000448905 TRIP11Q15643 1979 aa14.34□□□□□ -0.11
HMGB3-204ENST00000448905 LOC105378220A0A1B0GUY1 285 aaPredicted RBP14.34□□□□□ -0.11
HMGB3-204ENST00000448905 ANKRD63C9JTQ0 380 aa14.34□□□□□ -0.11
HMGB3-204ENST00000448905 LDHAP00338 332 aaKnown RBP14.34□□□□□ -0.11
HMGB3-204ENST00000448905 HAPLN1P10915 354 aaPredicted RBP14.34□□□□□ -0.11
HMGB3-204ENST00000448905 RPL10AP62906 217 aaKnown RBP14.34□□□□□ -0.11
HMGB3-204ENST00000448905 GAS6Q14393 721 aa14.34□□□□□ -0.11
HMGB3-204ENST00000448905 KARSQ15046 597 aaKnown RBP14.34□□□□□ -0.11
HMGB3-204ENST00000448905 ZC2HC1CQ53FD0 456 aaPredicted RBP14.34□□□□□ -0.11
HMGB3-204ENST00000448905 WSCD1Q658N2 575 aa14.34□□□□□ -0.11
HMGB3-204ENST00000448905 TMEM130Q8N3G9 435 aa14.34□□□□□ -0.11
HMGB3-204ENST00000448905 TTC9BQ8N6N2 239 aa14.34□□□□□ -0.11
HMGB3-204ENST00000448905 MRPS31Q92665 395 aaKnown RBP14.34□□□□□ -0.11
HMGB3-204ENST00000448905 HVCN1Q96D96 273 aa14.34□□□□□ -0.11
HMGB3-204ENST00000448905 ZNF560Q96MR9 790 aa14.34□□□□□ -0.11
HMGB3-204ENST00000448905 LRRC3BQ96PB8 259 aa14.34□□□□□ -0.11
HMGB3-204ENST00000448905 LPIN3Q9BQK8 851 aa14.34□□□□□ -0.11
HMGB3-204ENST00000448905 MKNK1Q9BUB5 465 aa14.34□□□□□ -0.11
HMGB3-204ENST00000448905 CCSER1Q9C0I3 900 aa14.34□□□□□ -0.11
HMGB3-204ENST00000448905 PARD6AQ9NPB6 346 aa14.34□□□□□ -0.11
HMGB3-204ENST00000448905 TDP1Q9NUW8 608 aa14.34□□□□□ -0.11
HMGB3-204ENST00000448905 ABI2Q9NYB9 513 aaPredicted RBP14.34□□□□□ -0.11
HMGB3-204ENST00000448905 SEL1LQ9UBV2 794 aa14.34□□□□□ -0.11
HMGB3-204ENST00000448905 SLC8A2Q9UPR5 921 aa14.34□□□□□ -0.11
HMGB3-204ENST00000448905 PCDHB13Q9Y5F0 798 aa14.34□□□□□ -0.11
HMGB3-204ENST00000448905 PATJQ8NI35 1801 aa14.34□□□□□ -0.11
HMGB3-204ENST00000448905 HUS1O60921 280 aa14.33□□□□□ -0.12
HMGB3-204ENST00000448905 CSH1P0DML2 217 aa14.33□□□□□ -0.12
HMGB3-204ENST00000448905 CSH2P0DML3 217 aa14.33□□□□□ -0.12
HMGB3-204ENST00000448905 TXLNAP40222 546 aa14.33□□□□□ -0.12
HMGB3-204ENST00000448905 CYP4F8P98187 520 aa14.33□□□□□ -0.12
HMGB3-204ENST00000448905 RUNX3Q13761 415 aa14.33□□□□□ -0.12
HMGB3-204ENST00000448905 SF3A1Q15459 793 aaKnown RBP14.33□□□□□ -0.12
HMGB3-204ENST00000448905 SLC39A4Q6P5W5 647 aa14.33□□□□□ -0.12
HMGB3-204ENST00000448905 TXNDC11Q6PKC3 985 aa14.33□□□□□ -0.12
HMGB3-204ENST00000448905 SV2BQ7L1I2 683 aa14.33□□□□□ -0.12
HMGB3-204ENST00000448905 WDR5BQ86VZ2 330 aa14.33□□□□□ -0.12
HMGB3-204ENST00000448905 ACCSQ96QU6 501 aa14.33□□□□□ -0.12
HMGB3-204ENST00000448905 MRPL44Q9H9J2 332 aaKnown RBP14.33□□□□□ -0.12
HMGB3-204ENST00000448905 UXTQ9UBK9 157 aaPredicted RBP14.33□□□□□ -0.12
HMGB3-204ENST00000448905 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.33□□□□□ -0.12
HMGB3-204ENST00000448905 CCDC163A0A0D9SF12 145 aa14.32□□□□□ -0.12
HMGB3-204ENST00000448905 K7ESF4 209 aa14.32□□□□□ -0.12
HMGB3-204ENST00000448905 SLC30A4O14863 429 aa14.32□□□□□ -0.12
HMGB3-204ENST00000448905 PRPF40AO75400 957 aaKnown RBP14.32□□□□□ -0.12
HMGB3-204ENST00000448905 GAP43P17677 238 aa14.32□□□□□ -0.12
HMGB3-204ENST00000448905 PDCP20941 246 aa14.32□□□□□ -0.12
HMGB3-204ENST00000448905 TFAMQ00059 246 aaKnown RBP14.32□□□□□ -0.12
HMGB3-204ENST00000448905 TNK2Q07912 1038 aa14.32□□□□□ -0.12
HMGB3-204ENST00000448905 CCINQ13939 588 aa14.32□□□□□ -0.12
HMGB3-204ENST00000448905 RRAGBQ5VZM2 374 aa14.32□□□□□ -0.12
HMGB3-204ENST00000448905 Q6ZS52 159 aa14.32□□□□□ -0.12
HMGB3-204ENST00000448905 DYMQ7RTS9 669 aa14.32□□□□□ -0.12
HMGB3-204ENST00000448905 CACNA2D4Q7Z3S7 1137 aa14.32□□□□□ -0.12
HMGB3-204ENST00000448905 LRRTM3Q86VH5 581 aa14.32□□□□□ -0.12
HMGB3-204ENST00000448905 MON1AQ86VX9 555 aa14.32□□□□□ -0.12
HMGB3-204ENST00000448905 SYCP3Q8IZU3 236 aa14.32□□□□□ -0.12
HMGB3-204ENST00000448905 MAB21L3Q8N8X9 362 aa14.32□□□□□ -0.12
HMGB3-204ENST00000448905 CCDC26Q8TAB7 109 aa14.32□□□□□ -0.12
HMGB3-204ENST00000448905 LOXL4Q96JB6 756 aa14.32□□□□□ -0.12
HMGB3-204ENST00000448905 ACBD6Q9BR61 282 aa14.32□□□□□ -0.12
HMGB3-204ENST00000448905 FAM213AQ9BRX8 229 aa14.32□□□□□ -0.12
HMGB3-204ENST00000448905 KIF9Q9HAQ2 790 aa14.32□□□□□ -0.12
HMGB3-204ENST00000448905 STK17AQ9UEE5 414 aa14.32□□□□□ -0.12
HMGB3-204ENST00000448905 MAGED2Q9UNF1 606 aaPredicted RBP14.32□□□□□ -0.12
HMGB3-204ENST00000448905 DNAH14Q0VDD8 3507 aa14.32□□□□□ -0.12
HMGB3-204ENST00000448905 TRDMT1O14717 391 aaKnown RBP14.31□□□□□ -0.12
HMGB3-204ENST00000448905 PRAMEF12O95522 483 aa14.31□□□□□ -0.12
HMGB3-204ENST00000448905 F11P03951 625 aa14.31□□□□□ -0.12
HMGB3-204ENST00000448905 ATF6P18850 670 aa14.31□□□□□ -0.12
HMGB3-204ENST00000448905 DRD1P21728 446 aa14.31□□□□□ -0.12
HMGB3-204ENST00000448905 NLRP12P59046 1061 aa14.31□□□□□ -0.12
HMGB3-204ENST00000448905 MYL7Q01449 175 aa14.31□□□□□ -0.12
HMGB3-204ENST00000448905 DMWDQ09019 674 aa14.31□□□□□ -0.12
HMGB3-204ENST00000448905 NR1H3Q13133 447 aa14.31□□□□□ -0.12
HMGB3-204ENST00000448905 PDGFRLQ15198 375 aa14.31□□□□□ -0.12
HMGB3-204ENST00000448905 C8orf34Q49A92 452 aa14.31□□□□□ -0.12
HMGB3-204ENST00000448905 FBXO43Q4G163 708 aa14.31□□□□□ -0.12
HMGB3-204ENST00000448905 IL31Q6EBC2 164 aa14.31□□□□□ -0.12
HMGB3-204ENST00000448905 PRR23CQ6ZRP0 262 aa14.31□□□□□ -0.12
HMGB3-204ENST00000448905 TMEM86AQ8N2M4 240 aa14.31□□□□□ -0.12
HMGB3-204ENST00000448905 CAMKK1Q8N5S9 505 aa14.31□□□□□ -0.12
HMGB3-204ENST00000448905 CSGALNACT2Q8N6G5 542 aa14.31□□□□□ -0.12
HMGB3-204ENST00000448905 FSIP1Q8NA03 581 aa14.31□□□□□ -0.12
HMGB3-204ENST00000448905 C12orf50Q8NA57 414 aaPredicted RBP14.31□□□□□ -0.12
HMGB3-204ENST00000448905 FIZ1Q96SL8 496 aa14.31□□□□□ -0.12
HMGB3-204ENST00000448905 FAM83CQ9BQN1 747 aa14.31□□□□□ -0.12
HMGB3-204ENST00000448905 PI4K2AQ9BTU6 479 aa14.31□□□□□ -0.12
HMGB3-204ENST00000448905 SMG9Q9H0W8 520 aaKnown RBP14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms