RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 ENTPD5O75356 428 aa12.48□□□□□ -0.41
MSH6-204ENST00000445503 LDHAP00338 332 aaKnown RBP12.48□□□□□ -0.41
MSH6-204ENST00000445503 RBP3P10745 1247 aa12.48□□□□□ -0.41
MSH6-204ENST00000445503 HADHBP55084 474 aaKnown RBP12.48□□□□□ -0.41
MSH6-204ENST00000445503 GEMIN4P57678 1058 aaKnown RBP12.48□□□□□ -0.41
MSH6-204ENST00000445503 MYL6P60660 151 aa12.48□□□□□ -0.41
MSH6-204ENST00000445503 EFTUD2Q15029 972 aaKnown RBP eCLIP12.48□□□□□ -0.412e-7■■■□□ 17.5
MSH6-204ENST00000445503 WDR72Q3MJ13 1102 aa12.48□□□□□ -0.41
MSH6-204ENST00000445503 NCAPG2Q86XI2 1143 aa12.48□□□□□ -0.41
MSH6-204ENST00000445503 ARHGAP24Q8N264 748 aa12.48□□□□□ -0.41
MSH6-204ENST00000445503 FLAD1Q8NFF5 587 aa12.48□□□□□ -0.41
MSH6-204ENST00000445503 PSPC1Q8WXF1 523 aaKnown RBP12.48□□□□□ -0.41
MSH6-204ENST00000445503 DDX27Q96GQ7 796 aaKnown RBP12.48□□□□□ -0.41
MSH6-204ENST00000445503 TMEM109Q9BVC6 243 aa12.48□□□□□ -0.41
MSH6-204ENST00000445503 AAASQ9NRG9 546 aa12.48□□□□□ -0.41
MSH6-204ENST00000445503 COX16Q9P0S2 106 aa12.48□□□□□ -0.41
MSH6-204ENST00000445503 UNC5CO95185 931 aa12.48□□□□□ -0.41
MSH6-204ENST00000445503 CDH6P55285 790 aa12.48□□□□□ -0.41
MSH6-204ENST00000445503 POLE2P56282 527 aa12.48□□□□□ -0.41
MSH6-204ENST00000445503 XKR3Q5GH77 459 aa12.48□□□□□ -0.41
MSH6-204ENST00000445503 ZBTB41Q5SVQ8 909 aa12.48□□□□□ -0.41
MSH6-204ENST00000445503 ZNF677Q86XU0 584 aa12.48□□□□□ -0.41
MSH6-204ENST00000445503 OR5B17Q8NGF7 314 aa12.48□□□□□ -0.41
MSH6-204ENST00000445503 TCP10LQ8TDR4 215 aa12.48□□□□□ -0.41
MSH6-204ENST00000445503 FBXO41Q8TF61 875 aa12.48□□□□□ -0.41
MSH6-204ENST00000445503 TTC1Q99614 292 aa12.48□□□□□ -0.41
MSH6-204ENST00000445503 KCNG1Q9UIX4 513 aa12.48□□□□□ -0.41
MSH6-204ENST00000445503 UMODL1Q5DID0 1318 aa12.48□□□□□ -0.41
MSH6-204ENST00000445503 MYH11P35749 1972 aa12.48□□□□□ -0.41
MSH6-204ENST00000445503 ENO1P06733 434 aaKnown RBP12.48□□□□□ -0.41
MSH6-204ENST00000445503 TCF4P15884 667 aa12.48□□□□□ -0.41
MSH6-204ENST00000445503 SNRPFP62306 86 aaKnown RBP12.48□□□□□ -0.41
MSH6-204ENST00000445503 CYP1B1Q16678 543 aa12.48□□□□□ -0.41
MSH6-204ENST00000445503 KLHL38Q2WGJ6 581 aa12.48□□□□□ -0.41
MSH6-204ENST00000445503 NAIF1Q69YI7 327 aaPredicted RBP12.48□□□□□ -0.41
MSH6-204ENST00000445503 ZCCHC9Q8N567 271 aaKnown RBP12.48□□□□□ -0.41
MSH6-204ENST00000445503 TTLL6Q8N841 843 aa12.48□□□□□ -0.41
MSH6-204ENST00000445503 PAFAH2Q99487 392 aa12.48□□□□□ -0.41
MSH6-204ENST00000445503 SYT11Q9BT88 431 aa12.48□□□□□ -0.41
MSH6-204ENST00000445503 MANSC1Q9H8J5 431 aa12.48□□□□□ -0.41
MSH6-204ENST00000445503 AVENQ9NQS1 362 aaPredicted RBP12.48□□□□□ -0.41
MSH6-204ENST00000445503 SENP1Q9P0U3 644 aa12.48□□□□□ -0.41
MSH6-204ENST00000445503 UBIAD1Q9Y5Z9 338 aa12.48□□□□□ -0.41
MSH6-204ENST00000445503 WDR4P57081 412 aaKnown RBP12.48□□□□□ -0.41
MSH6-204ENST00000445503 TNFAIP1Q13829 316 aa12.48□□□□□ -0.41
MSH6-204ENST00000445503 SLC1A5Q15758 541 aa12.48□□□□□ -0.41
MSH6-204ENST00000445503 LRRC71Q8N4P6 559 aa12.48□□□□□ -0.41
MSH6-204ENST00000445503 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.48□□□□□ -0.41
MSH6-204ENST00000445503 ZNF75CPQ92670 426 aaPredicted RBP12.48□□□□□ -0.41
MSH6-204ENST00000445503 NAF1Q96HR8 494 aaKnown RBP12.48□□□□□ -0.41
MSH6-204ENST00000445503 ADPGKQ9BRR6 497 aa12.48□□□□□ -0.41
MSH6-204ENST00000445503 RAB6BQ9NRW1 208 aa12.48□□□□□ -0.41
MSH6-204ENST00000445503 NUB1Q9Y5A7 615 aa12.48□□□□□ -0.41
MSH6-204ENST00000445503 GARTP22102 1010 aa12.47□□□□□ -0.41
MSH6-204ENST00000445503 PTK7Q13308 1070 aa12.47□□□□□ -0.41
MSH6-204ENST00000445503 TFDP3Q5H9I0 405 aa12.47□□□□□ -0.41
MSH6-204ENST00000445503 FAM102AQ5T9C2 384 aaPredicted RBP12.47□□□□□ -0.41
MSH6-204ENST00000445503 LRRC6Q86X45 466 aa12.47□□□□□ -0.41
MSH6-204ENST00000445503 CCDC60Q8IWA6 550 aaPredicted RBP12.47□□□□□ -0.41
MSH6-204ENST00000445503 RNF149Q8NC42 400 aa12.47□□□□□ -0.41
MSH6-204ENST00000445503 TTC8Q8TAM2 541 aa12.47□□□□□ -0.41
MSH6-204ENST00000445503 SPATA18Q8TC71 538 aa12.47□□□□□ -0.41
MSH6-204ENST00000445503 ANKRD36BP1Q96IX9 119 aa12.47□□□□□ -0.41
MSH6-204ENST00000445503 CDHR1Q96JP9 859 aa12.47□□□□□ -0.41
MSH6-204ENST00000445503 TBC1D10AQ9BXI6 508 aa12.47□□□□□ -0.41
MSH6-204ENST00000445503 SMYD3Q9H7B4 428 aa12.47□□□□□ -0.41
MSH6-204ENST00000445503 STOML1Q9UBI4 398 aa12.47□□□□□ -0.41
MSH6-204ENST00000445503 NCKAP1LP55160 1127 aa12.47□□□□□ -0.41
MSH6-204ENST00000445503 SARNPP82979 210 aaKnown RBP12.47□□□□□ -0.41
MSH6-204ENST00000445503 DUOXA2Q1HG44 320 aa12.47□□□□□ -0.41
MSH6-204ENST00000445503 RIBC1Q8N443 379 aaPredicted RBP12.47□□□□□ -0.41
MSH6-204ENST00000445503 SMC1BQ8NDV3 1235 aa12.47□□□□□ -0.41
MSH6-204ENST00000445503 LRRN4Q8WUT4 740 aa12.47□□□□□ -0.41
MSH6-204ENST00000445503 CD101Q93033 1021 aa12.47□□□□□ -0.41
MSH6-204ENST00000445503 WRNIP1Q96S55 665 aa12.47□□□□□ -0.41
MSH6-204ENST00000445503 SPATS2LQ9NUQ6 558 aaKnown RBP12.47□□□□□ -0.41
MSH6-204ENST00000445503 ARMCX1Q9P291 453 aa12.47□□□□□ -0.41
MSH6-204ENST00000445503 CCDC160A6NGH7 325 aa12.47□□□□□ -0.41
MSH6-204ENST00000445503 LIASO43766 372 aa12.47□□□□□ -0.41
MSH6-204ENST00000445503 RAP1GAPP47736 663 aa12.47□□□□□ -0.41
MSH6-204ENST00000445503 ZNF667Q5HYK9 610 aa12.47□□□□□ -0.41
MSH6-204ENST00000445503 TRABD2AQ86V40 505 aa12.47□□□□□ -0.41
MSH6-204ENST00000445503 BATF3Q9NR55 127 aa12.47□□□□□ -0.41
MSH6-204ENST00000445503 G3BP2Q9UN86 482 aaKnown RBP12.47□□□□□ -0.41
MSH6-204ENST00000445503 M0QYV0 167 aa12.46□□□□□ -0.41
MSH6-204ENST00000445503 PRPSAP2O60256 369 aa12.46□□□□□ -0.41
MSH6-204ENST00000445503 ZBED1O96006 694 aa12.46□□□□□ -0.41
MSH6-204ENST00000445503 APRTP07741 180 aa12.46□□□□□ -0.41
MSH6-204ENST00000445503 VCPP55072 806 aaKnown RBP12.46□□□□□ -0.41
MSH6-204ENST00000445503 NOMO3P69849 1222 aa12.46□□□□□ -0.41
MSH6-204ENST00000445503 TTLL12Q14166 644 aaPredicted RBP12.46□□□□□ -0.41
MSH6-204ENST00000445503 RCN1Q15293 331 aa12.46□□□□□ -0.41
MSH6-204ENST00000445503 CFAP157Q5JU67 520 aa12.46□□□□□ -0.41
MSH6-204ENST00000445503 CRELD2Q6UXH1 353 aaPredicted RBP12.46□□□□□ -0.41
MSH6-204ENST00000445503 PCGF5Q86SE9 256 aa12.46□□□□□ -0.41
MSH6-204ENST00000445503 C7orf31Q8N865 590 aa12.46□□□□□ -0.41
MSH6-204ENST00000445503 DNAJC9Q8WXX5 260 aa12.46□□□□□ -0.41
MSH6-204ENST00000445503 SEPT10Q9P0V9 454 aa12.46□□□□□ -0.41
MSH6-204ENST00000445503 KRT7P08729 469 aa12.46□□□□□ -0.41
MSH6-204ENST00000445503 BGNP21810 368 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms