RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 NEK11Q8NG66 645 aa18.42■□□□□ 0.54
LIME1-202ENST00000444951 AUTS2Q8WXX7 1259 aa18.42■□□□□ 0.54
LIME1-202ENST00000444951 SUSD3Q96L08 255 aa18.42■□□□□ 0.54
LIME1-202ENST00000444951 VN1R3Q9BXE9 311 aa18.42■□□□□ 0.54
LIME1-202ENST00000444951 NIF3L1Q9GZT8 377 aa18.42■□□□□ 0.54
LIME1-202ENST00000444951 SIX2Q9NPC8 291 aa18.42■□□□□ 0.54
LIME1-202ENST00000444951 UBE2TQ9NPD8 197 aaPredicted RBP18.42■□□□□ 0.54
LIME1-202ENST00000444951 NGRNQ9NPE2 291 aaKnown RBP18.42■□□□□ 0.54
LIME1-202ENST00000444951 SIK3Q9Y2K2 1263 aa18.42■□□□□ 0.54
LIME1-202ENST00000444951 ZDBF2Q9HCK1 2354 aa18.42■□□□□ 0.54
LIME1-202ENST00000444951 CARNS1A5YM72 827 aa18.41■□□□□ 0.54
LIME1-202ENST00000444951 C2orf71A6NGG8 1288 aa18.41■□□□□ 0.54
LIME1-202ENST00000444951 C2CD2LO14523 706 aa18.41■□□□□ 0.54
LIME1-202ENST00000444951 CD58P19256 250 aa18.41■□□□□ 0.54
LIME1-202ENST00000444951 SP100P23497 879 aaPredicted RBP18.41■□□□□ 0.54
LIME1-202ENST00000444951 ZNF75DP51815 510 aa18.41■□□□□ 0.54
LIME1-202ENST00000444951 ARHGAP44Q17R89 818 aa18.41■□□□□ 0.54
LIME1-202ENST00000444951 WSCD1Q658N2 575 aa18.41■□□□□ 0.54
LIME1-202ENST00000444951 KIAA1841Q6NSI8 718 aa18.41■□□□□ 0.54
LIME1-202ENST00000444951 VPS52Q8N1B4 723 aa18.41■□□□□ 0.54
LIME1-202ENST00000444951 APPL2Q8NEU8 664 aa18.41■□□□□ 0.54
LIME1-202ENST00000444951 FEZF2Q8TBJ5 459 aa18.41■□□□□ 0.54
LIME1-202ENST00000444951 KAT5Q92993 513 aa18.41■□□□□ 0.54
LIME1-202ENST00000444951 ERGIC2Q96RQ1 377 aa18.41■□□□□ 0.54
LIME1-202ENST00000444951 ARID3AQ99856 593 aa18.41■□□□□ 0.54
LIME1-202ENST00000444951 VRTNQ9H8Y1 702 aa18.41■□□□□ 0.54
LIME1-202ENST00000444951 GDAP2Q9NXN4 497 aa18.41■□□□□ 0.54
LIME1-202ENST00000444951 APEX2Q9UBZ4 518 aa18.41■□□□□ 0.54
LIME1-202ENST00000444951 PCDHB8Q9UN66 801 aa18.41■□□□□ 0.54
LIME1-202ENST00000444951 L1RE1Q9UN81 338 aa18.41■□□□□ 0.54
LIME1-202ENST00000444951 HCFC2Q9Y5Z7 792 aa18.41■□□□□ 0.54
LIME1-202ENST00000444951 FSD2A1L4K1 749 aa18.4■□□□□ 0.54
LIME1-202ENST00000444951 TMEM221A6NGB7 291 aa18.4■□□□□ 0.54
LIME1-202ENST00000444951 M0QZQ0 153 aa18.4■□□□□ 0.54
LIME1-202ENST00000444951 M0R296 226 aa18.4■□□□□ 0.54
LIME1-202ENST00000444951 CLASP2O75122 1294 aaKnown RBP18.4■□□□□ 0.54
LIME1-202ENST00000444951 ASPAP45381 313 aa18.4■□□□□ 0.54
LIME1-202ENST00000444951 AARSP49588 968 aaKnown RBP eCLIP18.4■□□□□ 0.54
LIME1-202ENST00000444951 ZXDAP98168 799 aa18.4■□□□□ 0.54
LIME1-202ENST00000444951 ELAVL2Q12926 359 aaKnown RBP18.4■□□□□ 0.54
LIME1-202ENST00000444951 CUL2Q13617 745 aa18.4■□□□□ 0.54
LIME1-202ENST00000444951 SOWAHAQ2M3V2 549 aa18.4■□□□□ 0.54
LIME1-202ENST00000444951 KLHDC7AQ5VTJ3 777 aa18.4■□□□□ 0.54
LIME1-202ENST00000444951 TRIM67Q6ZTA4 783 aa18.4■□□□□ 0.54
LIME1-202ENST00000444951 DDX53Q86TM3 631 aaKnown RBP18.4■□□□□ 0.54
LIME1-202ENST00000444951 METTL23Q86XA0 190 aa18.4■□□□□ 0.54
LIME1-202ENST00000444951 ADGRF2Q8IZF7 708 aa18.4■□□□□ 0.54
LIME1-202ENST00000444951 PDCL2Q8N4E4 241 aa18.4■□□□□ 0.54
LIME1-202ENST00000444951 MRPL43Q8N983 215 aaKnown RBP18.4■□□□□ 0.54
LIME1-202ENST00000444951 MRPL45Q9BRJ2 306 aaKnown RBP18.4■□□□□ 0.54
LIME1-202ENST00000444951 SDCBP2Q9H190 292 aa18.4■□□□□ 0.54
LIME1-202ENST00000444951 SNX25Q9H3E2 840 aa18.4■□□□□ 0.54
LIME1-202ENST00000444951 DNAJC12Q9UKB3 198 aa18.4■□□□□ 0.54
LIME1-202ENST00000444951 AJAP1Q9UKB5 411 aaPredicted RBP18.4■□□□□ 0.54
LIME1-202ENST00000444951 FHOD1Q9Y613 1164 aa18.4■□□□□ 0.54
LIME1-202ENST00000444951 A0A1W2PQC6 194 aa18.39■□□□□ 0.53
LIME1-202ENST00000444951 EPHB6O15197 1021 aa18.39■□□□□ 0.53
LIME1-202ENST00000444951 PAX3P23760 479 aa18.39■□□□□ 0.53
LIME1-202ENST00000444951 POLR2FP61218 127 aaKnown RBP18.39■□□□□ 0.53
LIME1-202ENST00000444951 NHLH1Q02575 133 aa18.39■□□□□ 0.53
LIME1-202ENST00000444951 RAPGEF1Q13905 1077 aa18.39■□□□□ 0.53
LIME1-202ENST00000444951 SMC1AQ14683 1233 aaKnown RBP18.39■□□□□ 0.53
LIME1-202ENST00000444951 USP41Q3LFD5 358 aa18.39■□□□□ 0.53
LIME1-202ENST00000444951 IQCEQ6IPM2 695 aa18.39■□□□□ 0.53
LIME1-202ENST00000444951 ALYREFQ86V81 257 aaKnown RBP18.39■□□□□ 0.53
LIME1-202ENST00000444951 TOP6BLQ8N6T0 577 aa18.39■□□□□ 0.53
LIME1-202ENST00000444951 RIN2Q8WYP3 895 aaPredicted RBP18.39■□□□□ 0.53
LIME1-202ENST00000444951 TTPALQ9BTX7 342 aa18.39■□□□□ 0.53
LIME1-202ENST00000444951 ZBP1Q9H171 429 aa18.39■□□□□ 0.53
LIME1-202ENST00000444951 NLRC4Q9NPP4 1024 aa18.39■□□□□ 0.53
LIME1-202ENST00000444951 ARHGEF37A1IGU5 675 aa18.38■□□□□ 0.53
LIME1-202ENST00000444951 HCRTO43612 131 aa18.38■□□□□ 0.53
LIME1-202ENST00000444951 ADCY5O95622 1261 aa18.38■□□□□ 0.53
LIME1-202ENST00000444951 SOD2P04179 222 aa18.38■□□□□ 0.53
LIME1-202ENST00000444951 TRIM21P19474 475 aaKnown RBP18.38■□□□□ 0.53
LIME1-202ENST00000444951 USP8P40818 1118 aa18.38■□□□□ 0.53
LIME1-202ENST00000444951 MFAP3P55082 362 aa18.38■□□□□ 0.53
LIME1-202ENST00000444951 ORC1Q13415 861 aa18.38■□□□□ 0.53
LIME1-202ENST00000444951 RTP2Q5QGT7 225 aa18.38■□□□□ 0.53
LIME1-202ENST00000444951 OVOS1Q6IE37 1185 aa18.38■□□□□ 0.53
LIME1-202ENST00000444951 DPY19L2P1Q6NXN4 242 aa18.38■□□□□ 0.53
LIME1-202ENST00000444951 PRSS55Q6UWB4 352 aaPredicted RBP18.38■□□□□ 0.53
LIME1-202ENST00000444951 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.38■□□□□ 0.53
LIME1-202ENST00000444951 OSTM1Q86WC4 334 aa18.38■□□□□ 0.53
LIME1-202ENST00000444951 GPIHBP1Q8IV16 184 aa18.38■□□□□ 0.53
LIME1-202ENST00000444951 OR6B3Q8NGW1 331 aa18.38■□□□□ 0.53
LIME1-202ENST00000444951 CPLX3Q8WVH0 158 aa18.38■□□□□ 0.53
LIME1-202ENST00000444951 KREMEN1Q96MU8 473 aa18.38■□□□□ 0.53
LIME1-202ENST00000444951 HERC2P3Q9BVR0 1158 aa18.38■□□□□ 0.53
LIME1-202ENST00000444951 BCO2Q9BYV7 579 aa18.38■□□□□ 0.53
LIME1-202ENST00000444951 GANQ9H2C0 597 aa18.38■□□□□ 0.53
LIME1-202ENST00000444951 PLCB1Q9NQ66 1216 aa18.38■□□□□ 0.53
LIME1-202ENST00000444951 DSEQ9UL01 958 aa18.38■□□□□ 0.53
LIME1-202ENST00000444951 KMT2EQ8IZD2 1858 aa18.37■□□□□ 0.53
LIME1-202ENST00000444951 MYO10Q9HD67 2058 aa18.37■□□□□ 0.53
LIME1-202ENST00000444951 SYN3O14994 580 aa18.37■□□□□ 0.53
LIME1-202ENST00000444951 NOL4O94818 638 aa18.37■□□□□ 0.53
LIME1-202ENST00000444951 CXCL14O95715 111 aa18.37■□□□□ 0.53
LIME1-202ENST00000444951 URODP06132 367 aa18.37■□□□□ 0.53
LIME1-202ENST00000444951 PDGFRBP09619 1106 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms