RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 TMEM233B4DJY2 109 aa4.34□□□□□ -1.71
VPS41-207ENST00000439468 MYO1FO00160 1098 aa4.34□□□□□ -1.71
VPS41-207ENST00000439468 NCK2O43639 380 aa4.34□□□□□ -1.71
VPS41-207ENST00000439468 MGEA5O60502 916 aa4.34□□□□□ -1.71
VPS41-207ENST00000439468 LDHAP00338 332 aaKnown RBP4.34□□□□□ -1.71
VPS41-207ENST00000439468 GJB1P08034 283 aa4.34□□□□□ -1.71
VPS41-207ENST00000439468 ELANEP08246 267 aa4.34□□□□□ -1.71
VPS41-207ENST00000439468 CKBP12277 381 aa4.34□□□□□ -1.71
VPS41-207ENST00000439468 FDXRP22570 491 aa4.34□□□□□ -1.71
VPS41-207ENST00000439468 GCSHP23434 173 aa4.34□□□□□ -1.71
VPS41-207ENST00000439468 PLA2G5P39877 138 aa4.34□□□□□ -1.71
VPS41-207ENST00000439468 KCNJ5P48544 419 aa4.34□□□□□ -1.71
VPS41-207ENST00000439468 CXADRP78310 365 aa4.34□□□□□ -1.71
VPS41-207ENST00000439468 BLOC1S1P78537 153 aa4.34□□□□□ -1.71
VPS41-207ENST00000439468 COL10A1Q03692 680 aa4.34□□□□□ -1.71
VPS41-207ENST00000439468 POLD3Q15054 466 aaPredicted RBP4.34□□□□□ -1.71
VPS41-207ENST00000439468 CNGA2Q16280 664 aa4.34□□□□□ -1.71
VPS41-207ENST00000439468 NOMO2Q5JPE7 1267 aa4.34□□□□□ -1.71
VPS41-207ENST00000439468 STRIP1Q5VSL9 837 aa4.34□□□□□ -1.71
VPS41-207ENST00000439468 B3GNTL1Q67FW5 361 aaPredicted RBP4.34□□□□□ -1.71
VPS41-207ENST00000439468 XRRA1Q6P2D8 792 aa4.34□□□□□ -1.71
VPS41-207ENST00000439468 LIX1LQ8IVB5 337 aa4.34□□□□□ -1.71
VPS41-207ENST00000439468 SLC17A8Q8NDX2 589 aa4.34□□□□□ -1.71
VPS41-207ENST00000439468 NSUN7Q8NE18 718 aaKnown RBP4.34□□□□□ -1.71
VPS41-207ENST00000439468 TMIEQ8NEW7 156 aa4.34□□□□□ -1.71
VPS41-207ENST00000439468 MAML1Q92585 1016 aa4.34□□□□□ -1.71
VPS41-207ENST00000439468 PHKBQ93100 1093 aa4.34□□□□□ -1.71
VPS41-207ENST00000439468 MTFMTQ96DP5 389 aaKnown RBP4.34□□□□□ -1.71
VPS41-207ENST00000439468 MARS2Q96GW9 593 aaKnown RBP4.34□□□□□ -1.71
VPS41-207ENST00000439468 ELAC2Q9BQ52 826 aaKnown RBP4.34□□□□□ -1.71
VPS41-207ENST00000439468 PACSIN1Q9BY11 444 aa4.34□□□□□ -1.71
VPS41-207ENST00000439468 ZNF700Q9H0M5 742 aa4.34□□□□□ -1.71
VPS41-207ENST00000439468 NUP62CLQ9H1M0 184 aa4.34□□□□□ -1.71
VPS41-207ENST00000439468 BRD9Q9H8M2 597 aa4.34□□□□□ -1.71
VPS41-207ENST00000439468 SACM1LQ9NTJ5 587 aa4.34□□□□□ -1.71
VPS41-207ENST00000439468 GJB4Q9NTQ9 266 aa4.34□□□□□ -1.71
VPS41-207ENST00000439468 TBCCD1Q9NVR7 557 aa4.34□□□□□ -1.71
VPS41-207ENST00000439468 SIDT1Q9NXL6 827 aaKnown RBP4.34□□□□□ -1.71
VPS41-207ENST00000439468 DKK2Q9UBU2 259 aa4.34□□□□□ -1.71
VPS41-207ENST00000439468 SNX13Q9Y5W8 968 aa4.34□□□□□ -1.71
VPS41-207ENST00000439468 COL4A3Q01955 1670 aa4.33□□□□□ -1.72
VPS41-207ENST00000439468 ZAR1LA6NP61 321 aa4.33□□□□□ -1.72
VPS41-207ENST00000439468 E9PLN8 166 aa4.33□□□□□ -1.72
VPS41-207ENST00000439468 KIAA0355O15063 1070 aa4.33□□□□□ -1.72
VPS41-207ENST00000439468 TPD52L2O43399 206 aaKnown RBP4.33□□□□□ -1.72
VPS41-207ENST00000439468 HAUS5O94927 633 aa4.33□□□□□ -1.72
VPS41-207ENST00000439468 FTH1P19P0C7X4 201 aa4.33□□□□□ -1.72
VPS41-207ENST00000439468 ZKSCAN1P17029 563 aaPredicted RBP4.33□□□□□ -1.72
VPS41-207ENST00000439468 CXCR5P32302 372 aa4.33□□□□□ -1.72
VPS41-207ENST00000439468 SEC24CP53992 1094 aa4.33□□□□□ -1.72
VPS41-207ENST00000439468 AK2P54819 239 aa4.33□□□□□ -1.72
VPS41-207ENST00000439468 CTBP1Q13363 440 aa4.33□□□□□ -1.72
VPS41-207ENST00000439468 MPP3Q13368 585 aa4.33□□□□□ -1.72
VPS41-207ENST00000439468 KIF22Q14807 665 aa4.33□□□□□ -1.72
VPS41-207ENST00000439468 KLHDC7AQ5VTJ3 777 aa4.33□□□□□ -1.72
VPS41-207ENST00000439468 OLFML1Q6UWY5 402 aa4.33□□□□□ -1.72
VPS41-207ENST00000439468 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP4.33□□□□□ -1.72
VPS41-207ENST00000439468 KRT78Q8N1N4 520 aa4.33□□□□□ -1.72
VPS41-207ENST00000439468 SAMD3Q8N6K7 520 aa4.33□□□□□ -1.72
VPS41-207ENST00000439468 NLGN4YQ8NFZ3 816 aaPredicted RBP4.33□□□□□ -1.72
VPS41-207ENST00000439468 TNIP3Q96KP6 325 aa4.33□□□□□ -1.72
VPS41-207ENST00000439468 Q96MF0 132 aa4.33□□□□□ -1.72
VPS41-207ENST00000439468 COQ10AQ96MF6 247 aa4.33□□□□□ -1.72
VPS41-207ENST00000439468 KLHL32Q96NJ5 620 aa4.33□□□□□ -1.72
VPS41-207ENST00000439468 PNKPQ96T60 521 aa4.33□□□□□ -1.72
VPS41-207ENST00000439468 MYD88Q99836 296 aa4.33□□□□□ -1.72
VPS41-207ENST00000439468 ARPC5LQ9BPX5 153 aa4.33□□□□□ -1.72
VPS41-207ENST00000439468 VKORC1Q9BQB6 163 aa4.33□□□□□ -1.72
VPS41-207ENST00000439468 TLR10Q9BXR5 811 aa4.33□□□□□ -1.72
VPS41-207ENST00000439468 CHMP4AQ9BY43 222 aa4.33□□□□□ -1.72
VPS41-207ENST00000439468 IMPG2Q9BZV3 1241 aa4.33□□□□□ -1.72
VPS41-207ENST00000439468 LRRC27Q9C0I9 530 aa4.33□□□□□ -1.72
VPS41-207ENST00000439468 SMURF2Q9HAU4 748 aa4.33□□□□□ -1.72
VPS41-207ENST00000439468 ZNF287Q9HBT7 754 aa4.33□□□□□ -1.72
VPS41-207ENST00000439468 GALNT9Q9HCQ5 603 aa4.33□□□□□ -1.72
VPS41-207ENST00000439468 CNNM1Q9NRU3 951 aa4.33□□□□□ -1.72
VPS41-207ENST00000439468 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.33□□□□□ -1.72
VPS41-207ENST00000439468 PIH1D1Q9NWS0 290 aaKnown RBP4.33□□□□□ -1.72
VPS41-207ENST00000439468 JKAMPQ9P055 326 aa4.33□□□□□ -1.72
VPS41-207ENST00000439468 COL20A1Q9P218 1284 aa4.33□□□□□ -1.72
VPS41-207ENST00000439468 KCNE5Q9UJ90 142 aa4.33□□□□□ -1.72
VPS41-207ENST00000439468 OGDHLQ9ULD0 1010 aa4.33□□□□□ -1.72
VPS41-207ENST00000439468 BTN3A1O00481 513 aa4.32□□□□□ -1.72
VPS41-207ENST00000439468 VPS4BO75351 444 aa4.32□□□□□ -1.72
VPS41-207ENST00000439468 DNAJB5O75953 348 aa4.32□□□□□ -1.72
VPS41-207ENST00000439468 KIF20AO95235 890 aa4.32□□□□□ -1.72
VPS41-207ENST00000439468 GNAI3P08754 354 aa4.32□□□□□ -1.72
VPS41-207ENST00000439468 EGR2P11161 476 aaPredicted RBP4.32□□□□□ -1.72
VPS41-207ENST00000439468 CASP5P51878 434 aa4.32□□□□□ -1.72
VPS41-207ENST00000439468 ZNF135P52742 658 aaPredicted RBP4.32□□□□□ -1.72
VPS41-207ENST00000439468 ARFIP2P53365 341 aa4.32□□□□□ -1.72
VPS41-207ENST00000439468 GNAI1P63096 354 aa4.32□□□□□ -1.72
VPS41-207ENST00000439468 ZNF543Q08ER8 600 aa4.32□□□□□ -1.72
VPS41-207ENST00000439468 BOP1Q14137 746 aaKnown RBP4.32□□□□□ -1.72
VPS41-207ENST00000439468 DPY19L2P1Q6NXN4 242 aa4.32□□□□□ -1.72
VPS41-207ENST00000439468 ZNF365Q70YC5 407 aa4.32□□□□□ -1.72
VPS41-207ENST00000439468 GPR149Q86SP6 731 aa4.32□□□□□ -1.72
VPS41-207ENST00000439468 USP37Q86T82 979 aa4.32□□□□□ -1.72
VPS41-207ENST00000439468 COLGALT2Q8IYK4 626 aa4.32□□□□□ -1.72
VPS41-207ENST00000439468 FAM186BQ8IYM0 893 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms