RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 NOP53Q9NZM5 478 aaKnown RBP12.58□□□□□ -0.4
CCDC88A-207ENST00000436346 NBPF26B4DH59 902 aa12.58□□□□□ -0.4
CCDC88A-207ENST00000436346 HHIPL2Q6UWX4 724 aa12.58□□□□□ -0.4
CCDC88A-207ENST00000436346 CHST13Q8NET6 341 aa12.58□□□□□ -0.4
CCDC88A-207ENST00000436346 PAWRQ96IZ0 340 aaKnown RBP12.58□□□□□ -0.4
CCDC88A-207ENST00000436346 AGBL1Q96MI9 1066 aa12.58□□□□□ -0.4
CCDC88A-207ENST00000436346 GLT1D1Q96MS3 346 aa12.58□□□□□ -0.4
CCDC88A-207ENST00000436346 TRIM9Q9C026 710 aa12.58□□□□□ -0.4
CCDC88A-207ENST00000436346 ITIH6Q6UXX5 1313 aa12.58□□□□□ -0.4
CCDC88A-207ENST00000436346 TMEM131LA2VDJ0 1609 aa12.58□□□□□ -0.4
CCDC88A-207ENST00000436346 ACADMP11310 421 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 PBLDP30039 288 aaPredicted RBP12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 ARFIP2P53365 341 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 GLRA4Q5JXX5 417 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 LRRC71Q8N4P6 559 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 ATL2Q8NHH9 583 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 CPB2Q96IY4 423 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 PSD3Q9NYI0 1048 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 CACNA1CQ13936 2221 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 POLBP06746 335 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 ERVK-10P10266 1014 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 HSPA9P38646 679 aaKnown RBP12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 PLCL1Q15111 1095 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 LINC00523Q86TU6 105 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 SGMS1Q86VZ5 419 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 CALML6Q8TD86 181 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 ISCA1Q9BUE6 129 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 LMTK2Q8IWU2 1503 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 ITGB3P05106 788 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 MRPL28Q13084 256 aaKnown RBP12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 ADAM33Q9BZ11 813 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 METTL5Q9NRN9 209 aaKnown RBP12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 PRMT7Q9NVM4 692 aaPredicted RBP12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 ARHGEF9O43307 516 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 PHF2O75151 1096 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 ATP1A1P05023 1023 aaKnown RBP12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 PGK2P07205 417 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 AVPR1AP37288 418 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 SLC16A1P53985 500 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 TMEM132BQ14DG7 1078 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 CCDC142Q17RM4 750 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 GALNTL6Q49A17 601 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 GPAT2Q6NUI2 795 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 TMEM8AQ9HCN3 771 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 PSMC3IPQ9P2W1 217 aaPredicted RBP12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 CCDC22O60826 627 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 BRD2P25440 801 aaKnown RBP12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 NCKAP1LP55160 1127 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 SKOR1P84550 965 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 PCDHB12Q9Y5F1 795 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 GYS2P54840 703 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 WDR35Q9P2L0 1181 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 TBX20Q9UMR3 447 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 VPS9D1Q9Y2B5 631 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 SLC30A1Q9Y6M5 507 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 VCAM1P19320 739 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 PLA2G4AP47712 749 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 POU4F1Q01851 419 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 FBXO32Q969P5 355 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 RBM15Q96T37 977 aaKnown RBP eCLIP12.57□□□□□ -0.42e-12■□□□□ 9
CCDC88A-207ENST00000436346 FAM118BQ9BPY3 351 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 SPASTQ9UBP0 616 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 BRAFP15056 766 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 ATG9AQ7Z3C6 839 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 CARNMT1Q8N4J0 409 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 ATP6V1G3Q96LB4 118 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 NSMCE4AQ9NXX6 385 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 AMACRQ9UHK6 382 aa12.57□□□□□ -0.4
CCDC88A-207ENST00000436346 PRR23D1E9PI22 279 aaPredicted RBP12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 SLC26A4O43511 780 aa12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 KRT8P05787 483 aa12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 STAG3L1P0CL83 205 aa12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 PRR23D2P0DMB1 279 aaPredicted RBP12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 CHI3L1P36222 383 aaPredicted RBP12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 TTC39BQ5VTQ0 682 aaPredicted RBP12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 FAM71DQ8N9W8 422 aa12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 V9GYQ6 96 aa12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 EIF3DO15371 548 aaKnown RBP eCLIP12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 NMRK2Q9NPI5 230 aa12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 KRCC1Q9NPI7 259 aaPredicted RBP12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 OLFML3Q9NRN5 406 aa12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 EPHX2P34913 555 aa12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 NUMBP49757 651 aa12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 ATN1P54259 1190 aaPredicted RBP12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 PTK7Q13308 1070 aa12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 RABGAP1LQ5R372 815 aa12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 TRIM65Q6PJ69 517 aa12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 DEFB128Q7Z7B8 93 aa12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 DARSP14868 501 aaKnown RBP12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 TGM2P21980 687 aa12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 ANKRD13AQ8IZ07 590 aa12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 CCDC3Q9BQI4 270 aa12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 MTMR12Q9C0I1 747 aa12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 TUBE1Q9UJT0 475 aa12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 TBL3Q12788 808 aaKnown RBP12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 MTM1Q13496 603 aa12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 EPHA7Q15375 998 aa12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 MTHFD1LQ6UB35 978 aa12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 BLOC1S5Q8TDH9 187 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms