RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 PRAMEF17Q5VTA0 474 aa6.29□□□□□ -1.4
LINC01040-201ENST00000425048 ANKRD16Q6P6B7 361 aa6.29□□□□□ -1.4
LINC01040-201ENST00000425048 COA7Q96BR5 231 aa6.29□□□□□ -1.4
LINC01040-201ENST00000425048 QTRT1Q9BXR0 403 aaKnown RBP6.29□□□□□ -1.4
LINC01040-201ENST00000425048 CFAP20Q9Y6A4 193 aaKnown RBP6.29□□□□□ -1.4
LINC01040-201ENST00000425048 TUBB4AP04350 444 aa6.28□□□□□ -1.4
LINC01040-201ENST00000425048 CD6P30203 668 aa6.28□□□□□ -1.4
LINC01040-201ENST00000425048 KIF23Q02241 960 aaPredicted RBP6.28□□□□□ -1.4
LINC01040-201ENST00000425048 CEP78Q5JTW2 689 aa6.28□□□□□ -1.4
LINC01040-201ENST00000425048 AARS2Q5JTZ9 985 aaKnown RBP6.28□□□□□ -1.4
LINC01040-201ENST00000425048 TEDDM1Q5T9Z0 273 aa6.28□□□□□ -1.4
LINC01040-201ENST00000425048 CBARPQ8N350 705 aaPredicted RBP6.28□□□□□ -1.4
LINC01040-201ENST00000425048 NSUN6Q8TEA1 469 aaKnown RBP6.28□□□□□ -1.4
LINC01040-201ENST00000425048 REPS1Q96D71 796 aa6.28□□□□□ -1.4
LINC01040-201ENST00000425048 NELL2Q99435 816 aa6.28□□□□□ -1.4
LINC01040-201ENST00000425048 GPR35Q9HC97 309 aa6.28□□□□□ -1.4
LINC01040-201ENST00000425048 RAD54BQ9Y620 910 aa6.28□□□□□ -1.4
LINC01040-201ENST00000425048 TISP43B9A030 160 aa6.27□□□□□ -1.41
LINC01040-201ENST00000425048 PRRT4C9JH25 899 aa6.27□□□□□ -1.41
LINC01040-201ENST00000425048 IARSP41252 1262 aaKnown RBP6.27□□□□□ -1.41
LINC01040-201ENST00000425048 ZNF135P52742 658 aaPredicted RBP6.27□□□□□ -1.41
LINC01040-201ENST00000425048 ZNF618Q5T7W0 954 aa6.27□□□□□ -1.41
LINC01040-201ENST00000425048 SLC4A10Q6U841 1118 aa6.27□□□□□ -1.41
LINC01040-201ENST00000425048 ZNF804AQ7Z570 1209 aa6.27□□□□□ -1.41
LINC01040-201ENST00000425048 FAM109AQ8N4B1 249 aa6.27□□□□□ -1.41
LINC01040-201ENST00000425048 KLHDC4Q8TBB5 520 aa6.27□□□□□ -1.41
LINC01040-201ENST00000425048 SH2D3AQ9BRG2 576 aa6.27□□□□□ -1.41
LINC01040-201ENST00000425048 MCM8Q9UJA3 840 aa6.27□□□□□ -1.41
LINC01040-201ENST00000425048 MRFAP1Q9Y605 127 aa6.27□□□□□ -1.41
LINC01040-201ENST00000425048 PRSS29PA6NIE9 313 aa6.26□□□□□ -1.41
LINC01040-201ENST00000425048 NT5C1B-RDH14C9J2C7 533 aa6.26□□□□□ -1.41
LINC01040-201ENST00000425048 QSOX1O00391 747 aa6.26□□□□□ -1.41
LINC01040-201ENST00000425048 PPEF2O14830 753 aa6.26□□□□□ -1.41
LINC01040-201ENST00000425048 XPOTO43592 962 aaKnown RBP6.26□□□□□ -1.41
LINC01040-201ENST00000425048 PCDHGA12O60330 932 aa6.26□□□□□ -1.41
LINC01040-201ENST00000425048 VPS4BO75351 444 aa6.26□□□□□ -1.41
LINC01040-201ENST00000425048 NHLRC4P0CG21 123 aaPredicted RBP6.26□□□□□ -1.41
LINC01040-201ENST00000425048 POU3F3P20264 500 aaPredicted RBP6.26□□□□□ -1.41
LINC01040-201ENST00000425048 PCSK6P29122 969 aa6.26□□□□□ -1.41
LINC01040-201ENST00000425048 CCT4P50991 539 aaKnown RBP6.26□□□□□ -1.41
LINC01040-201ENST00000425048 SUPT20HL1Q3ZLR7 823 aa6.26□□□□□ -1.41
LINC01040-201ENST00000425048 WDR53Q7Z5U6 358 aaPredicted RBP6.26□□□□□ -1.41
LINC01040-201ENST00000425048 DTX2Q86UW9 622 aa6.26□□□□□ -1.41
LINC01040-201ENST00000425048 FAM126AQ9BYI3 521 aaPredicted RBP6.26□□□□□ -1.41
LINC01040-201ENST00000425048 TMX1Q9H3N1 280 aa6.26□□□□□ -1.41
LINC01040-201ENST00000425048 PCDHGA9Q9Y5G4 932 aaKnown RBP6.26□□□□□ -1.41
LINC01040-201ENST00000425048 PCDHGA8Q9Y5G5 932 aa6.26□□□□□ -1.41
LINC01040-201ENST00000425048 PCDHGA7Q9Y5G6 932 aa6.26□□□□□ -1.41
LINC01040-201ENST00000425048 PCDHGA6Q9Y5G7 932 aa6.26□□□□□ -1.41
LINC01040-201ENST00000425048 PCDHGA3Q9Y5H0 932 aa6.26□□□□□ -1.41
LINC01040-201ENST00000425048 SMIM22K7EJ46 135 aa6.25□□□□□ -1.41
LINC01040-201ENST00000425048 MYO1FO00160 1098 aa6.25□□□□□ -1.41
LINC01040-201ENST00000425048 TRIM38O00635 465 aa6.25□□□□□ -1.41
LINC01040-201ENST00000425048 ZNF213O14771 459 aa6.25□□□□□ -1.41
LINC01040-201ENST00000425048 PPM1DO15297 605 aa6.25□□□□□ -1.41
LINC01040-201ENST00000425048 MT-CO1P00395 513 aa6.25□□□□□ -1.41
LINC01040-201ENST00000425048 CHRM3P20309 590 aa6.25□□□□□ -1.41
LINC01040-201ENST00000425048 TCF15Q12870 199 aa6.25□□□□□ -1.41
LINC01040-201ENST00000425048 VPS53Q5VIR6 699 aa6.25□□□□□ -1.41
LINC01040-201ENST00000425048 GIMAP6Q6P9H5 292 aa6.25□□□□□ -1.41
LINC01040-201ENST00000425048 SLAMF7Q9NQ25 335 aa6.25□□□□□ -1.41
LINC01040-201ENST00000425048 ANLNQ9NQW6 1124 aa6.25□□□□□ -1.41
LINC01040-201ENST00000425048 MRPS18AQ9NVS2 196 aaKnown RBP6.25□□□□□ -1.41
LINC01040-201ENST00000425048 PRKAB1Q9Y478 270 aa6.25□□□□□ -1.41
LINC01040-201ENST00000425048 KIF20AO95235 890 aa6.24□□□□□ -1.41
LINC01040-201ENST00000425048 FTH1P19P0C7X4 201 aa6.24□□□□□ -1.41
LINC01040-201ENST00000425048 RARBP10826 455 aa6.24□□□□□ -1.41
LINC01040-201ENST00000425048 CYP2C18P33260 490 aa6.24□□□□□ -1.41
LINC01040-201ENST00000425048 MMP13P45452 471 aa6.24□□□□□ -1.41
LINC01040-201ENST00000425048 GCLCP48506 637 aaPredicted RBP6.24□□□□□ -1.41
LINC01040-201ENST00000425048 EEFSECP57772 596 aaKnown RBP6.24□□□□□ -1.41
LINC01040-201ENST00000425048 DSC2Q02487 901 aa6.24□□□□□ -1.41
LINC01040-201ENST00000425048 FHL1Q13642 323 aa6.24□□□□□ -1.41
LINC01040-201ENST00000425048 PCID2Q5JVF3 399 aa6.24□□□□□ -1.41
LINC01040-201ENST00000425048 NECAB2Q7Z6G3 386 aa6.24□□□□□ -1.41
LINC01040-201ENST00000425048 C3orf20Q8ND61 904 aa6.24□□□□□ -1.41
LINC01040-201ENST00000425048 BRIP1Q9BX63 1249 aa6.24□□□□□ -1.41
LINC01040-201ENST00000425048 SERHLQ9NQF3 203 aa6.24□□□□□ -1.41
LINC01040-201ENST00000425048 DLL3Q9NYJ7 618 aa6.24□□□□□ -1.41
LINC01040-201ENST00000425048 AGAP1Q9UPQ3 857 aa6.24□□□□□ -1.41
LINC01040-201ENST00000425048 POLHQ9Y253 713 aa6.24□□□□□ -1.41
LINC01040-201ENST00000425048 H0YIZ8 118 aa6.23□□□□□ -1.41
LINC01040-201ENST00000425048 TLR5O60602 858 aa6.23□□□□□ -1.41
LINC01040-201ENST00000425048 DNAJB5O75953 348 aa6.23□□□□□ -1.41
LINC01040-201ENST00000425048 ARIH2O95376 493 aa6.23□□□□□ -1.41
LINC01040-201ENST00000425048 ONECUT2O95948 504 aa6.23□□□□□ -1.41
LINC01040-201ENST00000425048 PDHA1P08559 390 aa6.23□□□□□ -1.41
LINC01040-201ENST00000425048 PIK3CGP48736 1102 aa6.23□□□□□ -1.41
LINC01040-201ENST00000425048 KIF22Q14807 665 aa6.23□□□□□ -1.41
LINC01040-201ENST00000425048 SFRP4Q6FHJ7 346 aaPredicted RBP6.23□□□□□ -1.41
LINC01040-201ENST00000425048 SLC2A7Q6PXP3 512 aa6.23□□□□□ -1.41
LINC01040-201ENST00000425048 USP37Q86T82 979 aa6.23□□□□□ -1.41
LINC01040-201ENST00000425048 DDX42Q86XP3 938 aaKnown RBP eCLIP6.23□□□□□ -1.41
LINC01040-201ENST00000425048 DDX17Q92841 729 aaKnown RBP6.23□□□□□ -1.41
LINC01040-201ENST00000425048 ELOVL5Q9NYP7 299 aa6.23□□□□□ -1.41
LINC01040-201ENST00000425048 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa6.22□□□□□ -1.41
LINC01040-201ENST00000425048 SLC16A3O15427 465 aaKnown RBP6.22□□□□□ -1.41
LINC01040-201ENST00000425048 TOP3BO95985 862 aaKnown RBP6.22□□□□□ -1.41
LINC01040-201ENST00000425048 MYBL2P10244 700 aa6.22□□□□□ -1.41
LINC01040-201ENST00000425048 PRDX5P30044 214 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms