RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 C1orf228Q6PIY5 440 aa12.61□□□□□ -0.39
PTPRN-204ENST00000423636 SCUBE3Q8IX30 993 aa12.61□□□□□ -0.39
PTPRN-204ENST00000423636 CCDC13Q8IYE1 715 aa12.61□□□□□ -0.39
PTPRN-204ENST00000423636 MREGQ8N565 214 aa12.61□□□□□ -0.39
PTPRN-204ENST00000423636 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.61□□□□□ -0.39
PTPRN-204ENST00000423636 IPO4Q8TEX9 1081 aaKnown RBP12.61□□□□□ -0.39
PTPRN-204ENST00000423636 ELAC2Q9BQ52 826 aaKnown RBP12.61□□□□□ -0.39
PTPRN-204ENST00000423636 ELOVL4Q9GZR5 314 aa12.61□□□□□ -0.39
PTPRN-204ENST00000423636 SAYSD1Q9NPB0 183 aa12.61□□□□□ -0.39
PTPRN-204ENST00000423636 SNX9Q9Y5X1 595 aa12.61□□□□□ -0.39
PTPRN-204ENST00000423636 MYO18AQ92614 2054 aaKnown RBP12.61□□□□□ -0.39
PTPRN-204ENST00000423636 WDR91A4D1P6 747 aa12.6□□□□□ -0.39
PTPRN-204ENST00000423636 SHOX2O60902 331 aaPredicted RBP12.6□□□□□ -0.39
PTPRN-204ENST00000423636 F7P08709 466 aaPredicted RBP12.6□□□□□ -0.39
PTPRN-204ENST00000423636 EDNRBP24530 442 aa12.6□□□□□ -0.39
PTPRN-204ENST00000423636 MOGSQ13724 837 aa12.6□□□□□ -0.39
PTPRN-204ENST00000423636 DHX34Q14147 1143 aaKnown RBP12.6□□□□□ -0.39
PTPRN-204ENST00000423636 MPZL3Q6UWV2 235 aa12.6□□□□□ -0.39
PTPRN-204ENST00000423636 RHOT1Q8IXI2 618 aa12.6□□□□□ -0.39
PTPRN-204ENST00000423636 SLC17A8Q8NDX2 589 aa12.6□□□□□ -0.39
PTPRN-204ENST00000423636 CLEC4CQ8WTT0 213 aa12.6□□□□□ -0.39
PTPRN-204ENST00000423636 ANKRD36BP1Q96IX9 119 aa12.6□□□□□ -0.39
PTPRN-204ENST00000423636 XYLT2Q9H1B5 865 aa12.6□□□□□ -0.39
PTPRN-204ENST00000423636 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.6□□□□□ -0.39
PTPRN-204ENST00000423636 CAPN7Q9Y6W3 813 aa12.6□□□□□ -0.39
PTPRN-204ENST00000423636 CITO14578 2027 aa12.6□□□□□ -0.39
PTPRN-204ENST00000423636 SPDYE5A6NIY4 337 aa12.6□□□□□ -0.39
PTPRN-204ENST00000423636 LDHAP00338 332 aaKnown RBP12.6□□□□□ -0.39
PTPRN-204ENST00000423636 KRT3P12035 628 aa12.6□□□□□ -0.39
PTPRN-204ENST00000423636 TMED2Q15363 201 aa12.6□□□□□ -0.39
PTPRN-204ENST00000423636 NOL9Q5SY16 702 aaKnown RBP12.6□□□□□ -0.39
PTPRN-204ENST00000423636 FAM102AQ5T9C2 384 aaPredicted RBP12.6□□□□□ -0.39
PTPRN-204ENST00000423636 OR6B2Q6IFH4 312 aa12.6□□□□□ -0.39
PTPRN-204ENST00000423636 CCDC62Q6P9F0 684 aa12.6□□□□□ -0.39
PTPRN-204ENST00000423636 FAM47EQ6ZV65 393 aa12.6□□□□□ -0.39
PTPRN-204ENST00000423636 C4orf33Q8N1A6 199 aa12.6□□□□□ -0.39
PTPRN-204ENST00000423636 ARFGAP1Q8N6T3 406 aa12.6□□□□□ -0.39
PTPRN-204ENST00000423636 HVCN1Q96D96 273 aa12.6□□□□□ -0.39
PTPRN-204ENST00000423636 KIF12Q96FN5 646 aa12.6□□□□□ -0.39
PTPRN-204ENST00000423636 CFAP57Q96MR6 1250 aa12.6□□□□□ -0.39
PTPRN-204ENST00000423636 EPN3Q9H201 632 aa12.6□□□□□ -0.39
PTPRN-204ENST00000423636 HEY1Q9Y5J3 304 aa12.6□□□□□ -0.39
PTPRN-204ENST00000423636 H0YHG0 523 aa12.6□□□□□ -0.39
PTPRN-204ENST00000423636 H3BRB1 525 aa12.6□□□□□ -0.39
PTPRN-204ENST00000423636 MAPK13O15264 365 aa12.6□□□□□ -0.39
PTPRN-204ENST00000423636 CST8O60676 142 aa12.6□□□□□ -0.39
PTPRN-204ENST00000423636 MMP8P22894 467 aa12.6□□□□□ -0.39
PTPRN-204ENST00000423636 SLC10A6Q3KNW5 377 aa12.6□□□□□ -0.39
PTPRN-204ENST00000423636 PPP6R3Q5H9R7 873 aaPredicted RBP12.6□□□□□ -0.39
PTPRN-204ENST00000423636 SPOCK2Q92563 424 aa12.6□□□□□ -0.39
PTPRN-204ENST00000423636 PGLYRP2Q96PD5 576 aa12.6□□□□□ -0.39
PTPRN-204ENST00000423636 JPH2Q9BR39 696 aaPredicted RBP12.6□□□□□ -0.39
PTPRN-204ENST00000423636 TUT1Q9H6E5 874 aaKnown RBP12.6□□□□□ -0.39
PTPRN-204ENST00000423636 VPS37BQ9H9H4 285 aa12.6□□□□□ -0.39
PTPRN-204ENST00000423636 PARVAQ9NVD7 372 aa12.6□□□□□ -0.39
PTPRN-204ENST00000423636 TRIP11Q15643 1979 aa12.6□□□□□ -0.39
PTPRN-204ENST00000423636 TCRBV7S3A2A0A539 114 aa12.59□□□□□ -0.39
PTPRN-204ENST00000423636 ABLIM1O14639 778 aa12.59□□□□□ -0.39
PTPRN-204ENST00000423636 FSCN2O14926 492 aa12.59□□□□□ -0.39
PTPRN-204ENST00000423636 AVILO75366 819 aa12.59□□□□□ -0.39
PTPRN-204ENST00000423636 CCL14Q16627 93 aa12.59□□□□□ -0.39
PTPRN-204ENST00000423636 RUFY4Q6ZNE9 571 aa12.59□□□□□ -0.39
PTPRN-204ENST00000423636 PACS2Q86VP3 889 aa12.59□□□□□ -0.39
PTPRN-204ENST00000423636 MSL3Q8N5Y2 521 aaKnown RBP12.59□□□□□ -0.39
PTPRN-204ENST00000423636 UPF1Q92900 1129 aaKnown RBP eCLIP12.59□□□□□ -0.39
PTPRN-204ENST00000423636 CEP41Q9BYV8 373 aa12.59□□□□□ -0.39
PTPRN-204ENST00000423636 DPEP3Q9H4B8 488 aa12.59□□□□□ -0.39
PTPRN-204ENST00000423636 KIAA1586Q9HCI6 787 aa12.59□□□□□ -0.39
PTPRN-204ENST00000423636 NGRNQ9NPE2 291 aaKnown RBP12.59□□□□□ -0.39
PTPRN-204ENST00000423636 TMPRSS4Q9NRS4 437 aa12.59□□□□□ -0.39
PTPRN-204ENST00000423636 TUBGCP4Q9UGJ1 667 aa12.59□□□□□ -0.39
PTPRN-204ENST00000423636 PCYOX1Q9UHG3 505 aa12.59□□□□□ -0.39
PTPRN-204ENST00000423636 MGAMO43451 1857 aa12.59□□□□□ -0.39
PTPRN-204ENST00000423636 STAM2O75886 525 aa12.59□□□□□ -0.39
PTPRN-204ENST00000423636 OSBPP22059 807 aa12.59□□□□□ -0.39
PTPRN-204ENST00000423636 ADORA2BP29275 332 aa12.59□□□□□ -0.39
PTPRN-204ENST00000423636 RFC5P40937 340 aa12.59□□□□□ -0.39
PTPRN-204ENST00000423636 NDST1P52848 882 aa12.59□□□□□ -0.39
PTPRN-204ENST00000423636 ARHGAP1Q07960 439 aa12.59□□□□□ -0.39
PTPRN-204ENST00000423636 MPP2Q14168 576 aa12.59□□□□□ -0.39
PTPRN-204ENST00000423636 SGSM1Q2NKQ1 1148 aa12.59□□□□□ -0.39
PTPRN-204ENST00000423636 ANKRD22Q5VYY1 191 aa12.59□□□□□ -0.39
PTPRN-204ENST00000423636 ZBED8Q8IZ13 594 aa12.59□□□□□ -0.39
PTPRN-204ENST00000423636 HPDLQ96IR7 371 aa12.59□□□□□ -0.39
PTPRN-204ENST00000423636 RNF39Q9H2S5 420 aa12.59□□□□□ -0.39
PTPRN-204ENST00000423636 SMARCAD1Q9H4L7 1026 aa12.59□□□□□ -0.39
PTPRN-204ENST00000423636 DDX20Q9UHI6 824 aaKnown RBP12.59□□□□□ -0.39
PTPRN-204ENST00000423636 SLC12A6Q9UHW9 1150 aa12.59□□□□□ -0.39
PTPRN-204ENST00000423636 STYXL1Q9Y6J8 313 aa12.59□□□□□ -0.39
PTPRN-204ENST00000423636 BPTFQ12830 3046 aa12.59□□□□□ -0.39
PTPRN-204ENST00000423636 PARP14Q460N5 1801 aa12.59□□□□□ -0.39
PTPRN-204ENST00000423636 FAM187AA6NFU0 413 aa12.59□□□□□ -0.39
PTPRN-204ENST00000423636 ACKR2O00590 384 aa12.59□□□□□ -0.39
PTPRN-204ENST00000423636 C22orf31O95567 290 aa12.59□□□□□ -0.39
PTPRN-204ENST00000423636 SMPD1P17405 629 aa12.59□□□□□ -0.39
PTPRN-204ENST00000423636 BPIFB4P59827 614 aa12.59□□□□□ -0.39
PTPRN-204ENST00000423636 AUHQ13825 339 aaKnown RBP12.59□□□□□ -0.39
PTPRN-204ENST00000423636 LRRC34Q8IZ02 419 aa12.59□□□□□ -0.39
PTPRN-204ENST00000423636 FAM71DQ8N9W8 422 aa12.59□□□□□ -0.39
PTPRN-204ENST00000423636 TMEM35BQ8NCS4 154 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms