RNA–Protein interactions for RNA: ENST00000395896.8

VPS13C-203, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 14,579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-203ENST00000395896 CYTH2Q99418 400 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 KCNF1Q9H3M0 494 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 RPTORQ8N122 1335 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 RBP3P10745 1247 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 ITGA4P13612 1032 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 NNMTP40261 264 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 PTPN11Q06124 597 aaPredicted RBP3.56□□□□□ -1.84
VPS13C-203ENST00000395896 ARSHQ5FYA8 562 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 RPUSD2Q8IZ73 545 aaKnown RBP3.56□□□□□ -1.84
VPS13C-203ENST00000395896 CACNA2D3Q8IZS8 1091 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 LHX5Q9H2C1 402 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 NSMCE4AQ9NXX6 385 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 WHRNQ9P202 907 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 RAB21Q9UL25 225 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 SHOC2Q9UQ13 582 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 TRPM6Q9BX84 2022 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 A0A087X0B3 334 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 EML1O00423 815 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 KRT1P04264 644 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 GNL1P36915 607 aaPredicted RBP3.56□□□□□ -1.84
VPS13C-203ENST00000395896 CNTN2Q02246 1040 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 CCNG2Q16589 344 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 HSDL1Q3SXM5 330 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 SPOUT1Q5T280 376 aaKnown RBP3.56□□□□□ -1.84
VPS13C-203ENST00000395896 PPP1R3FQ6ZSY5 799 aaPredicted RBP3.56□□□□□ -1.84
VPS13C-203ENST00000395896 TMEM176AQ96HP8 235 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 TRIM31Q9BZY9 425 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 PCDHB8Q9UN66 801 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 RSPH10B2B2RC85 870 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 H3BRJ5 948 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 H7C0C1 242 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 RSPH10BP0C881 870 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 PPM1AP35813 382 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 ATP5OP48047 213 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 RAD51Q06609 339 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 GRIK4Q16099 956 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 KLC3Q6P597 504 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 SLC9A7Q96T83 725 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 RASSF4Q9H2L5 321 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 CATSPERBQ9H7T0 1116 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 PDE11AQ9HCR9 933 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 HMX1Q9NP08 348 aaPredicted RBP3.56□□□□□ -1.84
VPS13C-203ENST00000395896 A0A087WUV0 522 aaPredicted RBP3.56□□□□□ -1.84
VPS13C-203ENST00000395896 SEPT4O43236 478 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 MOCS3O95396 460 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 CPP00450 1065 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 OAS2P29728 719 aaKnown RBP3.56□□□□□ -1.84
VPS13C-203ENST00000395896 OSTNP61366 133 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 FSCN1Q16658 493 aaKnown RBP3.56□□□□□ -1.84
VPS13C-203ENST00000395896 HHATQ5VTY9 493 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 NLRP9Q7RTR0 991 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 ANKRD7Q92527 254 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 FSD1LQ9BXM9 530 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 PPP1R12CQ9BZL4 782 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 TTYH3Q9C0H2 523 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 TMEM117Q9H0C3 514 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 TJP2Q9UDY2 1190 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 TTC7AQ9ULT0 858 aaPredicted RBP3.56□□□□□ -1.84
VPS13C-203ENST00000395896 FHOD1Q9Y613 1164 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 GOLGA8IPA6NC78 632 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 GOLGA8JA6NMD2 632 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 CYP3A5P20815 502 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 GEMIN4P57678 1058 aaKnown RBP3.56□□□□□ -1.84
VPS13C-203ENST00000395896 PABPC1LQ4VXU2 614 aaKnown RBP3.56□□□□□ -1.84
VPS13C-203ENST00000395896 NAA35Q5VZE5 725 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 CTAGE3PQ8IX95 158 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 STK32AQ8WU08 396 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 SCG3Q8WXD2 468 aaKnown RBP3.56□□□□□ -1.84
VPS13C-203ENST00000395896 UROC1Q96N76 676 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 STARD7Q9NQZ5 370 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 OLA1Q9NTK5 396 aaKnown RBP3.56□□□□□ -1.84
VPS13C-203ENST00000395896 SNCAIPQ9Y6H5 919 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 CLUHO75153 1309 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 FTCDO95954 541 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 COL6A1P12109 1028 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 CXCR5P32302 372 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 SPRYD7Q5W111 196 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 TSHZ1Q6ZSZ6 1077 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 WDR75Q8IWA0 830 aaKnown RBP3.56□□□□□ -1.84
VPS13C-203ENST00000395896 ELMOD1Q8N336 334 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 ZBED3Q96IU2 234 aaPredicted RBP3.56□□□□□ -1.84
VPS13C-203ENST00000395896 GLIS2Q9BZE0 524 aaPredicted RBP3.56□□□□□ -1.84
VPS13C-203ENST00000395896 ADAMTS5Q9UNA0 930 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 SRRM3A6NNA2 597 aaPredicted RBP3.56□□□□□ -1.84
VPS13C-203ENST00000395896 USP2O75604 605 aaPredicted RBP3.56□□□□□ -1.84
VPS13C-203ENST00000395896 CNTFP26441 200 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 TUFMP49411 452 aaKnown RBP3.56□□□□□ -1.84
VPS13C-203ENST00000395896 CRYBB1P53674 252 aaPredicted RBP3.56□□□□□ -1.84
VPS13C-203ENST00000395896 OXCT1P55809 520 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 BASP1P80723 227 aaKnown RBP3.56□□□□□ -1.84
VPS13C-203ENST00000395896 MRPS9P82933 396 aaKnown RBP3.56□□□□□ -1.84
VPS13C-203ENST00000395896 MAP7Q14244 749 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 ZBTB33Q86T24 672 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 IRF2BP1Q8IU81 584 aa3.56□□□□□ -1.84
VPS13C-203ENST00000395896 RCOR3Q9P2K3 495 aaPredicted RBP3.56□□□□□ -1.84
VPS13C-203ENST00000395896 MAGEB16A2A368 324 aa3.55□□□□□ -1.84
VPS13C-203ENST00000395896 LGALS2P05162 132 aa3.55□□□□□ -1.84
VPS13C-203ENST00000395896 H2AFXP16104 143 aaPredicted RBP3.55□□□□□ -1.84
VPS13C-203ENST00000395896 SNAP25P60880 206 aa3.55□□□□□ -1.84
VPS13C-203ENST00000395896 YWHAZP63104 245 aaKnown RBP3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms