RNA–Protein interactions for RNA: ENST00000395761.3

CXCL1-201, Transcript of C-X-C motif chemokine ligand 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CXCL1, Length 1,097 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1-201ENST00000395761 SDCBP2Q9H190 292 aa17.73■□□□□ 0.43
CXCL1-201ENST00000395761 SMYD3Q9H7B4 428 aa17.73■□□□□ 0.43
CXCL1-201ENST00000395761 APOBEC3GQ9HC16 384 aaKnown RBP17.73■□□□□ 0.43
CXCL1-201ENST00000395761 TMLHEQ9NVH6 421 aa17.73■□□□□ 0.43
CXCL1-201ENST00000395761 ZDHHC7Q9NXF8 308 aa17.73■□□□□ 0.43
CXCL1-201ENST00000395761 DACH1Q9UI36 760 aa17.73■□□□□ 0.43
CXCL1-201ENST00000395761 SLC27A5Q9Y2P5 690 aa17.73■□□□□ 0.43
CXCL1-201ENST00000395761 TCF20Q9UGU0 1960 aaKnown RBP17.72■□□□□ 0.43
CXCL1-201ENST00000395761 MTMR11A4FU01 709 aa17.72■□□□□ 0.43
CXCL1-201ENST00000395761 PRRG1O14668 218 aa17.72■□□□□ 0.43
CXCL1-201ENST00000395761 CCL16O15467 120 aa17.72■□□□□ 0.43
CXCL1-201ENST00000395761 TACC1O75410 805 aa17.72■□□□□ 0.43
CXCL1-201ENST00000395761 PAPLNO95428 1278 aa17.72■□□□□ 0.43
CXCL1-201ENST00000395761 FGFR1OPO95684 399 aaKnown RBP17.72■□□□□ 0.43
CXCL1-201ENST00000395761 GNA14O95837 355 aa17.72■□□□□ 0.43
CXCL1-201ENST00000395761 PDGFRBP09619 1106 aa17.72■□□□□ 0.43
CXCL1-201ENST00000395761 GNL1P36915 607 aaPredicted RBP17.72■□□□□ 0.43
CXCL1-201ENST00000395761 RAP1GAPP47736 663 aa17.72■□□□□ 0.43
CXCL1-201ENST00000395761 MYL7Q01449 175 aa17.72■□□□□ 0.43
CXCL1-201ENST00000395761 DUSP4Q13115 394 aa17.72■□□□□ 0.43
CXCL1-201ENST00000395761 CBX2Q14781 532 aaPredicted RBP17.72■□□□□ 0.43
CXCL1-201ENST00000395761 UVSSAQ2YD98 709 aa17.72■□□□□ 0.43
CXCL1-201ENST00000395761 SCARA5Q6ZMJ2 495 aa17.72■□□□□ 0.43
CXCL1-201ENST00000395761 CCDC149Q6ZUS6 474 aa17.72■□□□□ 0.43
CXCL1-201ENST00000395761 TRIM59Q8IWR1 403 aa17.72■□□□□ 0.43
CXCL1-201ENST00000395761 FBXL13Q8NEE6 735 aa17.72■□□□□ 0.43
CXCL1-201ENST00000395761 SPATA18Q8TC71 538 aa17.72■□□□□ 0.43
CXCL1-201ENST00000395761 ADAMTS19Q8TE59 1207 aa17.72■□□□□ 0.43
CXCL1-201ENST00000395761 SMG7Q92540 1137 aaKnown RBP17.72■□□□□ 0.43
CXCL1-201ENST00000395761 TAF4BQ92750 862 aa17.72■□□□□ 0.43
CXCL1-201ENST00000395761 POMKQ9H5K3 350 aa17.72■□□□□ 0.43
CXCL1-201ENST00000395761 FAM50BQ9Y247 325 aa17.72■□□□□ 0.43
CXCL1-201ENST00000395761 MTCL1Q9Y4B5 1905 aaKnown RBP17.72■□□□□ 0.43
CXCL1-201ENST00000395761 ATP2C2O75185 946 aa17.71■□□□□ 0.43
CXCL1-201ENST00000395761 HNRNPA1P09651 372 aaKnown RBP eCLIP17.71■□□□□ 0.43
CXCL1-201ENST00000395761 MTHFRP42898 656 aa17.71■□□□□ 0.43
CXCL1-201ENST00000395761 ASPAP45381 313 aa17.71■□□□□ 0.43
CXCL1-201ENST00000395761 FMO5P49326 533 aa17.71■□□□□ 0.43
CXCL1-201ENST00000395761 MARSP56192 900 aaKnown RBP17.71■□□□□ 0.43
CXCL1-201ENST00000395761 NOP14P78316 857 aaKnown RBP17.71■□□□□ 0.43
CXCL1-201ENST00000395761 TSPY1Q01534 308 aa17.71■□□□□ 0.43
CXCL1-201ENST00000395761 TPD52L1Q16890 204 aaPredicted RBP17.71■□□□□ 0.43
CXCL1-201ENST00000395761 INTS6LQ5JSJ4 861 aaKnown RBP17.71■□□□□ 0.43
CXCL1-201ENST00000395761 C11orf57Q6ZUT1 292 aaPredicted RBP17.71■□□□□ 0.43
CXCL1-201ENST00000395761 CREBRFQ8IUR6 639 aa17.71■□□□□ 0.43
CXCL1-201ENST00000395761 DCP1BQ8IZD4 617 aaKnown RBP17.71■□□□□ 0.43
CXCL1-201ENST00000395761 TTC9BQ8N6N2 239 aa17.71■□□□□ 0.43
CXCL1-201ENST00000395761 OR6B3Q8NGW1 331 aa17.71■□□□□ 0.43
CXCL1-201ENST00000395761 RIPOR3Q96MK2 946 aa17.71■□□□□ 0.43
CXCL1-201ENST00000395761 PKMYT1Q99640 499 aa17.71■□□□□ 0.43
CXCL1-201ENST00000395761 LPIN3Q9BQK8 851 aa17.71■□□□□ 0.43
CXCL1-201ENST00000395761 SNX25Q9H3E2 840 aa17.71■□□□□ 0.43
CXCL1-201ENST00000395761 RAB20Q9NX57 234 aa17.71■□□□□ 0.43
CXCL1-201ENST00000395761 GTF3C4Q9UKN8 822 aa17.71■□□□□ 0.43
CXCL1-201ENST00000395761 MAFFQ9ULX9 164 aa17.71■□□□□ 0.43
CXCL1-201ENST00000395761 MYBPHLA2RUH7 354 aa17.7■□□□□ 0.42
CXCL1-201ENST00000395761 SOAT2O75908 522 aa17.7■□□□□ 0.42
CXCL1-201ENST00000395761 CAVIN2O95810 425 aa17.7■□□□□ 0.42
CXCL1-201ENST00000395761 FAM163BP0C2L3 166 aa17.7■□□□□ 0.42
CXCL1-201ENST00000395761 PSMC1P62191 440 aaKnown RBP17.7■□□□□ 0.42
CXCL1-201ENST00000395761 TATDN2Q93075 761 aa17.7■□□□□ 0.42
CXCL1-201ENST00000395761 CNOT6LQ96LI5 555 aaKnown RBP17.7■□□□□ 0.42
CXCL1-201ENST00000395761 SYT15Q9BQS2 421 aa17.7■□□□□ 0.42
CXCL1-201ENST00000395761 IMPG2Q9BZV3 1241 aa17.7■□□□□ 0.42
CXCL1-201ENST00000395761 PIDD1Q9HB75 910 aa17.7■□□□□ 0.42
CXCL1-201ENST00000395761 CRTAC1Q9NQ79 661 aa17.7■□□□□ 0.42
CXCL1-201ENST00000395761 COQ4Q9Y3A0 265 aa17.7■□□□□ 0.42
CXCL1-201ENST00000395761 INSL5Q9Y5Q6 135 aa17.7■□□□□ 0.42
CXCL1-201ENST00000395761 PCSK1P29120 753 aa17.69■□□□□ 0.42
CXCL1-201ENST00000395761 HOXA9P31269 272 aa17.69■□□□□ 0.42
CXCL1-201ENST00000395761 NTHL1P78549 312 aa17.69■□□□□ 0.42
CXCL1-201ENST00000395761 TWF1Q12792 350 aa17.69■□□□□ 0.42
CXCL1-201ENST00000395761 KCNH2Q12809 1159 aa17.69■□□□□ 0.42
CXCL1-201ENST00000395761 HSP90AA4PQ58FG1 418 aa17.69■□□□□ 0.42
CXCL1-201ENST00000395761 FAM171BQ6P995 826 aa17.69■□□□□ 0.42
CXCL1-201ENST00000395761 CYP26C1Q6V0L0 522 aa17.69■□□□□ 0.42
CXCL1-201ENST00000395761 RTL10Q7L3V2 364 aa17.69■□□□□ 0.42
CXCL1-201ENST00000395761 GRASPQ7Z6J2 395 aaPredicted RBP17.69■□□□□ 0.42
CXCL1-201ENST00000395761 NECTIN4Q96NY8 510 aa17.69■□□□□ 0.42
CXCL1-201ENST00000395761 PHF7Q9BWX1 381 aaPredicted RBP17.69■□□□□ 0.42
CXCL1-201ENST00000395761 RHOBTB2Q9BYZ6 727 aa17.69■□□□□ 0.42
CXCL1-201ENST00000395761 DPEP3Q9H4B8 488 aa17.69■□□□□ 0.42
CXCL1-201ENST00000395761 THAP9Q9H5L6 903 aa17.69■□□□□ 0.42
CXCL1-201ENST00000395761 HCFC1R1Q9NWW0 138 aa17.69■□□□□ 0.42
CXCL1-201ENST00000395761 ABI2Q9NYB9 513 aaPredicted RBP17.69■□□□□ 0.42
CXCL1-201ENST00000395761 CDH9Q9ULB4 789 aa17.69■□□□□ 0.42
CXCL1-201ENST00000395761 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.69■□□□□ 0.42
CXCL1-201ENST00000395761 A0A0C4DFX4 3053 aa17.69■□□□□ 0.42
CXCL1-201ENST00000395761 A8MXQ7 604 aa17.68■□□□□ 0.42
CXCL1-201ENST00000395761 LRG1P02750 347 aa17.68■□□□□ 0.42
CXCL1-201ENST00000395761 P4HA1P13674 534 aa17.68■□□□□ 0.42
CXCL1-201ENST00000395761 SP100P23497 879 aaPredicted RBP17.68■□□□□ 0.42
CXCL1-201ENST00000395761 ZP2Q05996 745 aa17.68■□□□□ 0.42
CXCL1-201ENST00000395761 ADHFE1Q8IWW8 467 aa17.68■□□□□ 0.42
CXCL1-201ENST00000395761 CCDC150Q8NCX0 1101 aa17.68■□□□□ 0.42
CXCL1-201ENST00000395761 ENOX1Q8TC92 643 aaKnown RBP17.68■□□□□ 0.42
CXCL1-201ENST00000395761 RPGRIP1Q96KN7 1286 aa17.68■□□□□ 0.42
CXCL1-201ENST00000395761 UHRF1Q96T88 793 aaPredicted RBP17.68■□□□□ 0.42
CXCL1-201ENST00000395761 BPIFA3Q9BQP9 254 aa17.68■□□□□ 0.42
CXCL1-201ENST00000395761 BCO2Q9BYV7 579 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms