RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 PPP1R21Q6ZMI0 780 aa21.75■■□□□ 1.07
CLK3-202ENST00000395066 SPOCD1Q6ZMY3 1216 aa21.75■■□□□ 1.07
CLK3-202ENST00000395066 SPDL1Q96EA4 605 aa21.75■■□□□ 1.07
CLK3-202ENST00000395066 TMEM237Q96Q45 408 aa21.75■■□□□ 1.07
CLK3-202ENST00000395066 RAB3IPQ96QF0 476 aaPredicted RBP21.75■■□□□ 1.07
CLK3-202ENST00000395066 MTMR12Q9C0I1 747 aa21.75■■□□□ 1.07
CLK3-202ENST00000395066 C12orf65Q9H3J6 166 aaKnown RBP21.75■■□□□ 1.07
CLK3-202ENST00000395066 IP6K2Q9UHH9 426 aa21.75■■□□□ 1.07
CLK3-202ENST00000395066 SGK1O00141 431 aa21.75■■□□□ 1.07
CLK3-202ENST00000395066 WFS1O76024 890 aa21.75■■□□□ 1.07
CLK3-202ENST00000395066 ITGBL1O95965 494 aaPredicted RBP21.75■■□□□ 1.07
CLK3-202ENST00000395066 WEE2P0C1S8 567 aa21.75■■□□□ 1.07
CLK3-202ENST00000395066 KCNA3P22001 575 aa21.75■■□□□ 1.07
CLK3-202ENST00000395066 CDC25CP30307 473 aa21.75■■□□□ 1.07
CLK3-202ENST00000395066 IL9RQ01113 521 aa21.75■■□□□ 1.07
CLK3-202ENST00000395066 C1QBPQ07021 282 aaKnown RBP21.75■■□□□ 1.07
CLK3-202ENST00000395066 KCNT1Q5JUK3 1230 aa21.75■■□□□ 1.07
CLK3-202ENST00000395066 ANKRD35Q8N283 1001 aa21.75■■□□□ 1.07
CLK3-202ENST00000395066 ALLCQ8N6M5 410 aa21.75■■□□□ 1.07
CLK3-202ENST00000395066 REPS2Q8NFH8 660 aa21.75■■□□□ 1.07
CLK3-202ENST00000395066 ZNF668Q96K58 619 aaPredicted RBP21.75■■□□□ 1.07
CLK3-202ENST00000395066 CFAP57Q96MR6 1250 aa21.75■■□□□ 1.07
CLK3-202ENST00000395066 CGRRF1Q99675 332 aa21.75■■□□□ 1.07
CLK3-202ENST00000395066 MYLK2Q9H1R3 596 aa21.75■■□□□ 1.07
CLK3-202ENST00000395066 ASMTLO95671 621 aa21.74■■□□□ 1.07
CLK3-202ENST00000395066 FGFR1P11362 822 aa21.74■■□□□ 1.07
CLK3-202ENST00000395066 PDIA2Q13087 525 aaKnown RBP21.74■■□□□ 1.07
CLK3-202ENST00000395066 SLC1A5Q15758 541 aa21.74■■□□□ 1.07
CLK3-202ENST00000395066 TRIM72Q6ZMU5 477 aa21.74■■□□□ 1.07
CLK3-202ENST00000395066 TXLNGQ9NUQ3 528 aa21.74■■□□□ 1.07
CLK3-202ENST00000395066 CYP39A1Q9NYL5 469 aa21.74■■□□□ 1.07
CLK3-202ENST00000395066 STYXL1Q9Y6J8 313 aa21.74■■□□□ 1.07
CLK3-202ENST00000395066 CCNG1P51959 295 aa21.74■■□□□ 1.07
CLK3-202ENST00000395066 BACE1P56817 501 aa21.74■■□□□ 1.07
CLK3-202ENST00000395066 MYL6P60660 151 aa21.74■■□□□ 1.07
CLK3-202ENST00000395066 EAPPQ56P03 285 aaPredicted RBP21.74■■□□□ 1.07
CLK3-202ENST00000395066 DNAJC24Q6P3W2 148 aa21.74■■□□□ 1.07
CLK3-202ENST00000395066 RCOR2Q8IZ40 523 aa21.74■■□□□ 1.07
CLK3-202ENST00000395066 PORCNQ9H237 461 aa21.74■■□□□ 1.07
CLK3-202ENST00000395066 ACTL7BQ9Y614 415 aa21.74■■□□□ 1.07
CLK3-202ENST00000395066 A0A0B4J269 797 aa21.73■■□□□ 1.07
CLK3-202ENST00000395066 NRLP54845 237 aa21.73■■□□□ 1.07
CLK3-202ENST00000395066 GDF10P55107 478 aa21.73■■□□□ 1.07
CLK3-202ENST00000395066 RELL1Q8IUW5 271 aa21.73■■□□□ 1.07
CLK3-202ENST00000395066 TFAP2BQ92481 460 aa21.73■■□□□ 1.07
CLK3-202ENST00000395066 ERP27Q96DN0 273 aa21.73■■□□□ 1.07
CLK3-202ENST00000395066 ZWILCHQ9H900 591 aa21.73■■□□□ 1.07
CLK3-202ENST00000395066 ZNF302Q9NR11 478 aa21.73■■□□□ 1.07
CLK3-202ENST00000395066 PHTF1Q9UMS5 762 aa21.73■■□□□ 1.07
CLK3-202ENST00000395066 TJP3O95049 919 aa21.73■■□□□ 1.07
CLK3-202ENST00000395066 ORC1Q13415 861 aa21.73■■□□□ 1.07
CLK3-202ENST00000395066 ANKRD22Q5VYY1 191 aa21.73■■□□□ 1.07
CLK3-202ENST00000395066 GPAT2Q6NUI2 795 aa21.73■■□□□ 1.07
CLK3-202ENST00000395066 UTP4Q969X6 686 aaKnown RBP21.73■■□□□ 1.07
CLK3-202ENST00000395066 VCPIP1Q96JH7 1222 aa21.73■■□□□ 1.07
CLK3-202ENST00000395066 hCG_1818297A0A087WSY0 165 aa21.72■■□□□ 1.07
CLK3-202ENST00000395066 SMNDC1O75940 238 aaKnown RBP eCLIP21.72■■□□□ 1.076e-7■■□□□ 13.7
CLK3-202ENST00000395066 OATP04181 439 aa21.72■■□□□ 1.07
CLK3-202ENST00000395066 CA4P22748 312 aa21.72■■□□□ 1.07
CLK3-202ENST00000395066 TARSP26639 723 aaKnown RBP21.72■■□□□ 1.07
CLK3-202ENST00000395066 CNTN2Q02246 1040 aa21.72■■□□□ 1.07
CLK3-202ENST00000395066 RNASELQ05823 741 aaKnown RBP21.72■■□□□ 1.07
CLK3-202ENST00000395066 WDTC1Q8N5D0 677 aa21.72■■□□□ 1.07
CLK3-202ENST00000395066 MICAL1Q8TDZ2 1067 aa21.72■■□□□ 1.07
CLK3-202ENST00000395066 RBM41Q96IZ5 413 aaKnown RBP21.72■■□□□ 1.07
CLK3-202ENST00000395066 TCHPQ9BT92 498 aa21.72■■□□□ 1.07
CLK3-202ENST00000395066 WDR91A4D1P6 747 aa21.72■■□□□ 1.07
CLK3-202ENST00000395066 MAFGO15525 162 aa21.72■■□□□ 1.07
CLK3-202ENST00000395066 DKC1O60832 514 aaKnown RBP eCLIP21.72■■□□□ 1.07
CLK3-202ENST00000395066 SSTR1P30872 391 aa21.72■■□□□ 1.07
CLK3-202ENST00000395066 HIRAP54198 1017 aaPredicted RBP21.72■■□□□ 1.07
CLK3-202ENST00000395066 EN1Q05925 392 aaPredicted RBP21.72■■□□□ 1.07
CLK3-202ENST00000395066 MSS51Q4VC12 460 aa21.72■■□□□ 1.07
CLK3-202ENST00000395066 SYCP2LQ5T4T6 812 aa21.72■■□□□ 1.07
CLK3-202ENST00000395066 CIAPIN1Q6FI81 312 aa21.72■■□□□ 1.07
CLK3-202ENST00000395066 CDR2LQ86X02 465 aaPredicted RBP21.72■■□□□ 1.07
CLK3-202ENST00000395066 DENND1AQ8TEH3 1009 aa21.72■■□□□ 1.07
CLK3-202ENST00000395066 KLF6Q99612 283 aaPredicted RBP21.72■■□□□ 1.07
CLK3-202ENST00000395066 MAK16Q9BXY0 300 aaKnown RBP21.72■■□□□ 1.07
CLK3-202ENST00000395066 SPATA31C2B4DYI2 1134 aa21.71■■□□□ 1.07
CLK3-202ENST00000395066 PPP1R12AO14974 1030 aaPredicted RBP21.71■■□□□ 1.07
CLK3-202ENST00000395066 ABHD2P08910 425 aa21.71■■□□□ 1.07
CLK3-202ENST00000395066 TGFB2P61812 414 aa21.71■■□□□ 1.07
CLK3-202ENST00000395066 CAPSQ13938 189 aa21.71■■□□□ 1.07
CLK3-202ENST00000395066 OASLQ15646 514 aaKnown RBP21.71■■□□□ 1.07
CLK3-202ENST00000395066 RNASEH2BQ5TBB1 312 aaKnown RBP21.71■■□□□ 1.07
CLK3-202ENST00000395066 KCNV2Q8TDN2 545 aa21.71■■□□□ 1.07
CLK3-202ENST00000395066 DHX33Q9H6R0 707 aaKnown RBP21.71■■□□□ 1.07
CLK3-202ENST00000395066 CHKBQ9Y259 395 aa21.71■■□□□ 1.07
CLK3-202ENST00000395066 ADGRA2Q96PE1 1338 aa21.71■■□□□ 1.07
CLK3-202ENST00000395066 GOLGA8RI6L899 631 aa21.71■■□□□ 1.07
CLK3-202ENST00000395066 TBXAS1P24557 533 aaPredicted RBP21.71■■□□□ 1.07
CLK3-202ENST00000395066 CETN2P41208 172 aa21.71■■□□□ 1.07
CLK3-202ENST00000395066 ZNF132P52740 706 aa21.71■■□□□ 1.07
CLK3-202ENST00000395066 VCPP55072 806 aaKnown RBP21.71■■□□□ 1.07
CLK3-202ENST00000395066 GPX6P59796 221 aa21.71■■□□□ 1.07
CLK3-202ENST00000395066 OSTNP61366 133 aa21.71■■□□□ 1.07
CLK3-202ENST00000395066 SETDB1Q15047 1291 aa21.71■■□□□ 1.07
CLK3-202ENST00000395066 PARP6Q2NL67 630 aa21.71■■□□□ 1.07
CLK3-202ENST00000395066 CAPRIN2Q6IMN6 1127 aaKnown RBP21.71■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms