RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 XPO4Q9C0E2 1151 aaKnown RBP8.59□□□□□ -1.03
LIMS1-203ENST00000393310 INTS2Q9H0H0 1204 aaKnown RBP8.59□□□□□ -1.03
LIMS1-203ENST00000393310 TTYH1Q9H313 450 aaPredicted RBP8.59□□□□□ -1.03
LIMS1-203ENST00000393310 PAPOLBQ9NRJ5 636 aaKnown RBP8.59□□□□□ -1.03
LIMS1-203ENST00000393310 FLRT1Q9NZU1 646 aa8.59□□□□□ -1.03
LIMS1-203ENST00000393310 CCDC88AQ3V6T2 1871 aa8.59□□□□□ -1.03
LIMS1-203ENST00000393310 FAM170AA1A519 330 aa8.59□□□□□ -1.03
LIMS1-203ENST00000393310 SPATA31C2B4DYI2 1134 aa8.59□□□□□ -1.03
LIMS1-203ENST00000393310 USP17L7P0C7H9 530 aa8.59□□□□□ -1.03
LIMS1-203ENST00000393310 ARRB1P49407 418 aaPredicted RBP8.59□□□□□ -1.03
LIMS1-203ENST00000393310 BCAR1P56945 870 aa8.59□□□□□ -1.03
LIMS1-203ENST00000393310 COLEC12Q5KU26 742 aa8.59□□□□□ -1.03
LIMS1-203ENST00000393310 C1orf210Q8IVY1 113 aa8.59□□□□□ -1.03
LIMS1-203ENST00000393310 GPR65Q8IYL9 337 aa8.59□□□□□ -1.03
LIMS1-203ENST00000393310 SCYL1Q96KG9 808 aa8.59□□□□□ -1.03
LIMS1-203ENST00000393310 LMAN1LQ9HAT1 526 aa8.59□□□□□ -1.03
LIMS1-203ENST00000393310 SH3GLB2Q9NR46 395 aa8.59□□□□□ -1.03
LIMS1-203ENST00000393310 ANKEF1Q9NU02 776 aa8.59□□□□□ -1.03
LIMS1-203ENST00000393310 A0A1W2PRG0 241 aa8.59□□□□□ -1.04
LIMS1-203ENST00000393310 PRKCBP05771 671 aa8.59□□□□□ -1.04
LIMS1-203ENST00000393310 KRT5P13647 590 aa8.59□□□□□ -1.04
LIMS1-203ENST00000393310 TMED10P49755 219 aaKnown RBP8.59□□□□□ -1.04
LIMS1-203ENST00000393310 DEFB103AP81534 67 aa8.59□□□□□ -1.04
LIMS1-203ENST00000393310 STK38Q15208 465 aa8.59□□□□□ -1.04
LIMS1-203ENST00000393310 CEP70Q8NHQ1 597 aa8.59□□□□□ -1.04
LIMS1-203ENST00000393310 FERMT1Q9BQL6 677 aa8.59□□□□□ -1.04
LIMS1-203ENST00000393310 ZMAT5Q9UDW3 170 aaKnown RBP8.59□□□□□ -1.04
LIMS1-203ENST00000393310 MAGED2Q9UNF1 606 aaPredicted RBP8.59□□□□□ -1.04
LIMS1-203ENST00000393310 RBM8AQ9Y5S9 174 aaKnown RBP8.59□□□□□ -1.04
LIMS1-203ENST00000393310 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.59□□□□□ -1.04
LIMS1-203ENST00000393310 RPS6KL1Q9Y6S9 549 aa8.59□□□□□ -1.04
LIMS1-203ENST00000393310 TBC1D3BA6NDS4 549 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 OPA1O60313 960 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 MMEP08473 750 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 JUPP14923 745 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 RPL9P32969 192 aaKnown RBP8.58□□□□□ -1.04
LIMS1-203ENST00000393310 ZP2Q05996 745 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 ASPHQ12797 758 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 MPP3Q13368 585 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 CCINQ13939 588 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 SLC27A1Q6PCB7 646 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 KIAA1324Q6UXG2 1013 aaKnown RBP8.58□□□□□ -1.04
LIMS1-203ENST00000393310 NSMCE1Q8WV22 266 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 MCRS1Q96EZ8 462 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 DCLK3Q9C098 648 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 MIR1-1HGQ9H1L0 117 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 WDR6Q9NNW5 1121 aaKnown RBP8.58□□□□□ -1.04
LIMS1-203ENST00000393310 RIC8AQ9NPQ8 531 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.58□□□□□ -1.04
LIMS1-203ENST00000393310 FAM105AQ9NUU6 356 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 GNEQ9Y223 722 aaKnown RBP8.58□□□□□ -1.04
LIMS1-203ENST00000393310 PCDHGA5Q9Y5G8 931 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 GMEB1Q9Y692 573 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 TJP1Q07157 1748 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 GRM6O15303 877 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 CXCL10P02778 98 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 SOD2P04179 222 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 ACTN2P35609 894 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 KRT20P35900 424 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 AFMP43652 599 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 TUSC3Q13454 348 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 TMEM132DQ14C87 1099 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 SNCBQ16143 134 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 C2orf27AQ580R0 203 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 RNF10Q8N5U6 811 aaKnown RBP8.58□□□□□ -1.04
LIMS1-203ENST00000393310 GBP5Q96PP8 586 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 SH3GL2Q99962 352 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 ARFGAP3Q9NP61 516 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 TMEM63CQ9P1W3 806 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 PLA2G4CQ9UP65 541 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 N6AMT1Q9Y5N5 214 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 GOLGA8QA0A0J9YX86 632 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 GOLGA8OA6NCC3 632 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 GOLGA8NF8WBI6 632 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 AP3B1O00203 1094 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 CLDN3O15551 220 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 RPP40O75818 363 aaKnown RBP8.58□□□□□ -1.04
LIMS1-203ENST00000393310 CER1O95813 267 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 PCK1P35558 622 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 ORC2Q13416 577 aaPredicted RBP8.58□□□□□ -1.04
LIMS1-203ENST00000393310 SLFNL1Q499Z3 407 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 CYB5D1Q6P9G0 228 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 FRMD5Q7Z6J6 570 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 STK32CQ86UX6 486 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 FERMT3Q86UX7 667 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 ECHDC2Q86YB7 292 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 CEP63Q96MT8 703 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 MMS19Q96T76 1030 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 BLOC1S6Q9UL45 172 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 PCDHB5Q9Y5E4 795 aa8.58□□□□□ -1.04
LIMS1-203ENST00000393310 EIF3CLB5ME19 914 aaKnown RBP8.57□□□□□ -1.04
LIMS1-203ENST00000393310 TULP2O00295 520 aa8.57□□□□□ -1.04
LIMS1-203ENST00000393310 APOL1O14791 398 aa8.57□□□□□ -1.04
LIMS1-203ENST00000393310 KIAA0391O15091 583 aaKnown RBP8.57□□□□□ -1.04
LIMS1-203ENST00000393310 SNX2O60749 519 aa8.57□□□□□ -1.04
LIMS1-203ENST00000393310 GUCY1B2O75343 617 aa8.57□□□□□ -1.04
LIMS1-203ENST00000393310 CNMDO75829 334 aa8.57□□□□□ -1.04
LIMS1-203ENST00000393310 APOEP02649 317 aa8.57□□□□□ -1.04
LIMS1-203ENST00000393310 AOC1P19801 751 aa8.57□□□□□ -1.04
LIMS1-203ENST00000393310 LIG3P49916 1009 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms