RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 CLCNKBP51801 687 aa10.89□□□□□ -0.67
VPS53-202ENST00000389040 MYL7Q01449 175 aa10.89□□□□□ -0.67
VPS53-202ENST00000389040 MYO1EQ12965 1108 aa10.89□□□□□ -0.67
VPS53-202ENST00000389040 CBWD6Q4V339 395 aa10.89□□□□□ -0.67
VPS53-202ENST00000389040 CBWD3Q5JTY5 395 aa10.89□□□□□ -0.67
VPS53-202ENST00000389040 CBWD5Q5RIA9 395 aa10.89□□□□□ -0.67
VPS53-202ENST00000389040 C10orf76Q5T2E6 689 aa10.89□□□□□ -0.67
VPS53-202ENST00000389040 SMYD5Q6GMV2 418 aa10.89□□□□□ -0.67
VPS53-202ENST00000389040 ZNF571Q7Z3V5 609 aaPredicted RBP10.89□□□□□ -0.67
VPS53-202ENST00000389040 RNF168Q8IYW5 571 aaPredicted RBP10.89□□□□□ -0.67
VPS53-202ENST00000389040 ZSWIM2Q8NEG5 633 aa10.89□□□□□ -0.67
VPS53-202ENST00000389040 SPATA18Q8TC71 538 aa10.89□□□□□ -0.67
VPS53-202ENST00000389040 C18orf25Q96B23 403 aaPredicted RBP10.89□□□□□ -0.67
VPS53-202ENST00000389040 CCDC127Q96BQ5 260 aa10.89□□□□□ -0.67
VPS53-202ENST00000389040 MRPL38Q96DV4 380 aaKnown RBP10.89□□□□□ -0.67
VPS53-202ENST00000389040 ZNF560Q96MR9 790 aa10.89□□□□□ -0.67
VPS53-202ENST00000389040 GAS2L1Q99501 681 aaPredicted RBP10.89□□□□□ -0.67
VPS53-202ENST00000389040 CHST7Q9NS84 486 aa10.89□□□□□ -0.67
VPS53-202ENST00000389040 AJAP1Q9UKB5 411 aaPredicted RBP10.89□□□□□ -0.67
VPS53-202ENST00000389040 RAB21Q9UL25 225 aa10.89□□□□□ -0.67
VPS53-202ENST00000389040 CASTOR2A6NHX0 329 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 SYN3O14994 580 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 P4HA2O15460 535 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 ATP8B1O43520 1251 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 NCK2O43639 380 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 SEC31AO94979 1220 aaKnown RBP10.88□□□□□ -0.67
VPS53-202ENST00000389040 SOD2P04179 222 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 RHOXF2BP0C7M4 288 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 PNMA6AP0CW24 399 aaPredicted RBP10.88□□□□□ -0.67
VPS53-202ENST00000389040 DLATP10515 647 aaKnown RBP10.88□□□□□ -0.67
VPS53-202ENST00000389040 PRLRP16471 622 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 AARSP49588 968 aaKnown RBP eCLIP10.88□□□□□ -0.67
VPS53-202ENST00000389040 SOX4Q06945 474 aaPredicted RBP10.88□□□□□ -0.67
VPS53-202ENST00000389040 USP41Q3LFD5 358 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 C9orf57Q5W0N0 161 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 GJB7Q6PEY0 223 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 EFCAB13Q8IY85 973 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 KRT222Q8N1A0 295 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 APPL2Q8NEU8 664 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 TAF4BQ92750 862 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 RNF25Q96BH1 459 aaPredicted RBP10.88□□□□□ -0.67
VPS53-202ENST00000389040 PNKPQ96T60 521 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 RHOXF2Q9BQY4 288 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 CXCL16Q9H2A7 254 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 FAM124BQ9H5Z6 455 aaPredicted RBP10.88□□□□□ -0.67
VPS53-202ENST00000389040 VRTNQ9H8Y1 702 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 ARFGAP3Q9NP61 516 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 TLR9Q9NR96 1032 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.88□□□□□ -0.67
VPS53-202ENST00000389040 DSEQ9UL01 958 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 DAAM1Q9Y4D1 1078 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 NUB1Q9Y5A7 615 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 ZNF185O15231 689 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 BUB1O43683 1085 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 B4GALT3O60512 393 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 N4BP1O75113 896 aaKnown RBP10.88□□□□□ -0.67
VPS53-202ENST00000389040 TUBBP07437 444 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 CTSAP10619 480 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 FERP16591 822 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 STAT1P42224 750 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 NAP1L1P55209 391 aaKnown RBP10.88□□□□□ -0.67
VPS53-202ENST00000389040 LILRA4P59901 499 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 CETN1Q12798 172 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 GRIN2CQ14957 1233 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 ZACNQ401N2 412 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 SV2CQ496J9 727 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 KRT39Q6A163 491 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 FUT10Q6P4F1 479 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 DPH6Q7L8W6 267 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 VPS36Q86VN1 386 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 DEFB123Q8N688 67 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 C1orf127Q8N9H9 656 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 SUSD3Q96L08 255 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 STK33Q9BYT3 514 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 INTS2Q9H0H0 1204 aaKnown RBP10.88□□□□□ -0.67
VPS53-202ENST00000389040 TMEM8AQ9HCN3 771 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 MARCH5Q9NX47 278 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 TUBGCP4Q9UGJ1 667 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 PRG3Q9Y2Y8 225 aaPredicted RBP10.88□□□□□ -0.67
VPS53-202ENST00000389040 HYOU1Q9Y4L1 999 aa10.88□□□□□ -0.67
VPS53-202ENST00000389040 TRIOBPQ9H2D6 2365 aa10.87□□□□□ -0.67
VPS53-202ENST00000389040 LRRIQ3A6PVS8 624 aaPredicted RBP10.87□□□□□ -0.67
VPS53-202ENST00000389040 BTNL10A8MVZ5 291 aa10.87□□□□□ -0.67
VPS53-202ENST00000389040 F8VZ95 297 aa10.87□□□□□ -0.67
VPS53-202ENST00000389040 M0QZQ0 153 aa10.87□□□□□ -0.67
VPS53-202ENST00000389040 LPXNO60711 386 aa10.87□□□□□ -0.67
VPS53-202ENST00000389040 KIF4AO95239 1232 aa10.87□□□□□ -0.67
VPS53-202ENST00000389040 C4BPAP04003 597 aaKnown RBP10.87□□□□□ -0.67
VPS53-202ENST00000389040 TCP1P17987 556 aaKnown RBP10.87□□□□□ -0.67
VPS53-202ENST00000389040 RFX1P22670 979 aa10.87□□□□□ -0.67
VPS53-202ENST00000389040 SOX5P35711 763 aa10.87□□□□□ -0.67
VPS53-202ENST00000389040 TAF6P49848 677 aa10.87□□□□□ -0.67
VPS53-202ENST00000389040 TRPC3Q13507 836 aa10.87□□□□□ -0.67
VPS53-202ENST00000389040 SMC1AQ14683 1233 aaKnown RBP10.87□□□□□ -0.67
VPS53-202ENST00000389040 SGSM1Q2NKQ1 1148 aa10.87□□□□□ -0.67
VPS53-202ENST00000389040 GLIPR1L2Q4G1C9 344 aa10.87□□□□□ -0.67
VPS53-202ENST00000389040 TIGD5Q53EQ6 642 aa10.87□□□□□ -0.67
VPS53-202ENST00000389040 C15orf39Q6ZRI6 1047 aa10.87□□□□□ -0.67
VPS53-202ENST00000389040 CREG2Q8IUH2 290 aa10.87□□□□□ -0.67
VPS53-202ENST00000389040 FMNL3Q8IVF7 1028 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms