RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 ACTRT1Q8TDG2 376 aa15.2■□□□□ 0.02
HMGA1-203ENST00000374116 TMC2Q8TDI7 906 aa15.2■□□□□ 0.02
HMGA1-203ENST00000374116 BCAS4Q8TDM0 211 aa15.2■□□□□ 0.02
HMGA1-203ENST00000374116 PARD3BQ8TEW8 1205 aa15.2■□□□□ 0.02
HMGA1-203ENST00000374116 POMGNT1Q8WZA1 660 aa15.2■□□□□ 0.02
HMGA1-203ENST00000374116 TOP1MTQ969P6 601 aa15.2■□□□□ 0.02
HMGA1-203ENST00000374116 ADPGKQ9BRR6 497 aa15.2■□□□□ 0.02
HMGA1-203ENST00000374116 HCSTQ9UBK5 93 aa15.2■□□□□ 0.02
HMGA1-203ENST00000374116 PARP2Q9UGN5 583 aa15.2■□□□□ 0.02
HMGA1-203ENST00000374116 LRFN2Q9ULH4 789 aa15.2■□□□□ 0.02
HMGA1-203ENST00000374116 COQ4Q9Y3A0 265 aa15.2■□□□□ 0.02
HMGA1-203ENST00000374116 STYXL1Q9Y6J8 313 aa15.2■□□□□ 0.02
HMGA1-203ENST00000374116 GBF1Q92538 1859 aa15.19■□□□□ 0.02
HMGA1-203ENST00000374116 TRIP11Q15643 1979 aa15.19■□□□□ 0.02
HMGA1-203ENST00000374116 KCNK3O14649 394 aa15.19■□□□□ 0.02
HMGA1-203ENST00000374116 GCLMP48507 274 aa15.19■□□□□ 0.02
HMGA1-203ENST00000374116 ACOT2P49753 483 aa15.19■□□□□ 0.02
HMGA1-203ENST00000374116 DNA2P51530 1060 aa15.19■□□□□ 0.02
HMGA1-203ENST00000374116 TNNC1P63316 161 aa15.19■□□□□ 0.02
HMGA1-203ENST00000374116 FAM189BP81408 668 aa15.19■□□□□ 0.02
HMGA1-203ENST00000374116 SLC7A5Q01650 507 aa15.19■□□□□ 0.02
HMGA1-203ENST00000374116 ARHGAP44Q17R89 818 aa15.19■□□□□ 0.02
HMGA1-203ENST00000374116 EMC10Q5UCC4 262 aa15.19■□□□□ 0.02
HMGA1-203ENST00000374116 ZPBP2Q6X784 338 aa15.19■□□□□ 0.02
HMGA1-203ENST00000374116 AGMOQ6ZNB7 445 aa15.19■□□□□ 0.02
HMGA1-203ENST00000374116 MICALCLQ6ZW33 695 aa15.19■□□□□ 0.02
HMGA1-203ENST00000374116 PEX26Q7Z412 305 aa15.19■□□□□ 0.02
HMGA1-203ENST00000374116 GSPT2Q8IYD1 628 aaKnown RBP15.19■□□□□ 0.02
HMGA1-203ENST00000374116 TMEM130Q8N3G9 435 aa15.19■□□□□ 0.02
HMGA1-203ENST00000374116 MAGEC3Q8TD91 643 aa15.19■□□□□ 0.02
HMGA1-203ENST00000374116 HELQQ8TDG4 1101 aa15.19■□□□□ 0.02
HMGA1-203ENST00000374116 ZFP42Q96MM3 310 aa15.19■□□□□ 0.02
HMGA1-203ENST00000374116 ZBED2Q9BTP6 218 aa15.19■□□□□ 0.02
HMGA1-203ENST00000374116 UBE2TQ9NPD8 197 aaPredicted RBP15.19■□□□□ 0.02
HMGA1-203ENST00000374116 TMEM59LQ9UK28 342 aa15.19■□□□□ 0.02
HMGA1-203ENST00000374116 INPP5FQ9Y2H2 1132 aa15.19■□□□□ 0.02
HMGA1-203ENST00000374116 STXBP5LQ9Y2K9 1186 aa15.19■□□□□ 0.02
HMGA1-203ENST00000374116 LCHNA4D1U4 455 aa15.18■□□□□ 0.02
HMGA1-203ENST00000374116 FOXN3O00409 490 aaPredicted RBP15.18■□□□□ 0.02
HMGA1-203ENST00000374116 MEFVO15553 781 aaPredicted RBP15.18■□□□□ 0.02
HMGA1-203ENST00000374116 LRRN2O75325 713 aa15.18■□□□□ 0.02
HMGA1-203ENST00000374116 PIGRP01833 764 aa15.18■□□□□ 0.02
HMGA1-203ENST00000374116 CALRP27797 417 aaKnown RBP15.18■□□□□ 0.02
HMGA1-203ENST00000374116 NNTQ13423 1086 aa15.18■□□□□ 0.02
HMGA1-203ENST00000374116 CLLU1OSQ5K130 101 aa15.18■□□□□ 0.02
HMGA1-203ENST00000374116 SPRED2Q7Z698 418 aa15.18■□□□□ 0.02
HMGA1-203ENST00000374116 ZNF598Q86UK7 904 aaKnown RBP15.18■□□□□ 0.02
HMGA1-203ENST00000374116 CTNNBL1Q8WYA6 563 aaPredicted RBP15.18■□□□□ 0.02
HMGA1-203ENST00000374116 RFFLQ8WZ73 363 aa15.18■□□□□ 0.02
HMGA1-203ENST00000374116 CAVIN3Q969G5 261 aa15.18■□□□□ 0.02
HMGA1-203ENST00000374116 MIEF2Q96C03 454 aa15.18■□□□□ 0.02
HMGA1-203ENST00000374116 CALR3Q96L12 384 aaKnown RBP15.18■□□□□ 0.02
HMGA1-203ENST00000374116 MSTO1Q9BUK6 570 aa15.18■□□□□ 0.02
HMGA1-203ENST00000374116 GDF3Q9NR23 364 aa15.18■□□□□ 0.02
HMGA1-203ENST00000374116 C1orf112Q9NSG2 853 aa15.18■□□□□ 0.02
HMGA1-203ENST00000374116 GOLGA6BA6NDN3 693 aa15.17■□□□□ 0.02
HMGA1-203ENST00000374116 OPA1O60313 960 aa15.17■□□□□ 0.02
HMGA1-203ENST00000374116 GTF2H1P32780 548 aa15.17■□□□□ 0.02
HMGA1-203ENST00000374116 MCL1Q07820 350 aa15.17■□□□□ 0.02
HMGA1-203ENST00000374116 DAAM2Q86T65 1068 aa15.17■□□□□ 0.02
HMGA1-203ENST00000374116 DNAAF5Q86Y56 855 aa15.17■□□□□ 0.02
HMGA1-203ENST00000374116 HERC6Q8IVU3 1022 aa15.17■□□□□ 0.02
HMGA1-203ENST00000374116 AGPAT1Q99943 283 aa15.17■□□□□ 0.02
HMGA1-203ENST00000374116 MTIF3Q9H2K0 278 aaKnown RBP15.17■□□□□ 0.02
HMGA1-203ENST00000374116 CAPN7Q9Y6W3 813 aa15.17■□□□□ 0.02
HMGA1-203ENST00000374116 A0A0B4J269 797 aa15.17■□□□□ 0.02
HMGA1-203ENST00000374116 EFCAB14O75071 495 aa15.17■□□□□ 0.02
HMGA1-203ENST00000374116 RECQL4O94761 1208 aa15.17■□□□□ 0.02
HMGA1-203ENST00000374116 KIAA0754O94854 1291 aa15.17■□□□□ 0.02
HMGA1-203ENST00000374116 ARHGEF15O94989 841 aa15.17■□□□□ 0.02
HMGA1-203ENST00000374116 GJB5O95377 273 aa15.17■□□□□ 0.02
HMGA1-203ENST00000374116 STAG3L1P0CL83 205 aa15.17■□□□□ 0.02
HMGA1-203ENST00000374116 ITGA4P13612 1032 aa15.17■□□□□ 0.02
HMGA1-203ENST00000374116 MLH1P40692 756 aa15.17■□□□□ 0.02
HMGA1-203ENST00000374116 MXI1P50539 228 aa15.17■□□□□ 0.02
HMGA1-203ENST00000374116 GNGT1P63211 74 aa15.17■□□□□ 0.02
HMGA1-203ENST00000374116 CLDN10P78369 228 aa15.17■□□□□ 0.02
HMGA1-203ENST00000374116 CYP24A1Q07973 514 aa15.17■□□□□ 0.02
HMGA1-203ENST00000374116 C11orf91Q3C1V1 193 aa15.17■□□□□ 0.02
HMGA1-203ENST00000374116 GLRA4Q5JXX5 417 aa15.17■□□□□ 0.02
HMGA1-203ENST00000374116 SND1Q7KZF4 910 aaKnown RBP eCLIP15.17■□□□□ 0.02
HMGA1-203ENST00000374116 NT5DC3Q86UY8 548 aa15.17■□□□□ 0.02
HMGA1-203ENST00000374116 ARHGEF19Q8IW93 802 aa15.17■□□□□ 0.02
HMGA1-203ENST00000374116 SLC35G2Q8TBE7 412 aa15.17■□□□□ 0.02
HMGA1-203ENST00000374116 FAM212AQ96EL1 285 aa15.17■□□□□ 0.02
HMGA1-203ENST00000374116 FAM84AQ96KN4 292 aa15.17■□□□□ 0.02
HMGA1-203ENST00000374116 GAD1Q99259 594 aa15.17■□□□□ 0.02
HMGA1-203ENST00000374116 KRT12Q99456 494 aa15.17■□□□□ 0.02
HMGA1-203ENST00000374116 FAM213AQ9BRX8 229 aa15.17■□□□□ 0.02
HMGA1-203ENST00000374116 TRAIPQ9BWF2 469 aa15.17■□□□□ 0.02
HMGA1-203ENST00000374116 TMEM161AQ9NX61 479 aa15.17■□□□□ 0.02
HMGA1-203ENST00000374116 MIOSQ9NXC5 875 aa15.17■□□□□ 0.02
HMGA1-203ENST00000374116 AGO2Q9UKV8 859 aaKnown RBP15.17■□□□□ 0.02
HMGA1-203ENST00000374116 CHD7Q9P2D1 2997 aa15.17■□□□□ 0.02
HMGA1-203ENST00000374116 ANKRD62A6NC57 917 aa15.16■□□□□ 0.02
HMGA1-203ENST00000374116 TBKBP1A7MCY6 615 aa15.16■□□□□ 0.02
HMGA1-203ENST00000374116 PGRMC1O00264 195 aaKnown RBP15.16■□□□□ 0.02
HMGA1-203ENST00000374116 TLL1O43897 1013 aa15.16■□□□□ 0.02
HMGA1-203ENST00000374116 CEP104O60308 925 aa15.16■□□□□ 0.02
HMGA1-203ENST00000374116 FAM189A1O60320 539 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms