RNA–Protein interactions for RNA: ENST00000371621.4

PTPN1-201, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN1, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-201ENST00000371621 ITGB1BP2Q9UKP3 347 aa12.33□□□□□ -0.44
PTPN1-201ENST00000371621 USP20Q9Y2K6 914 aa12.33□□□□□ -0.44
PTPN1-201ENST00000371621 COQ6Q9Y2Z9 468 aa12.33□□□□□ -0.44
PTPN1-201ENST00000371621 PCDHGA4Q9Y5G9 962 aa12.33□□□□□ -0.44
PTPN1-201ENST00000371621 SHPRHQ149N8 1683 aa12.33□□□□□ -0.44
PTPN1-201ENST00000371621 UMODL1Q5DID0 1318 aa12.33□□□□□ -0.44
PTPN1-201ENST00000371621 SYCE1LA8MT33 242 aa12.33□□□□□ -0.44
PTPN1-201ENST00000371621 SMIM22K7EJ46 135 aa12.33□□□□□ -0.44
PTPN1-201ENST00000371621 NKRFO15226 690 aaKnown RBP eCLIP12.33□□□□□ -0.44
PTPN1-201ENST00000371621 GJB6O95452 261 aa12.33□□□□□ -0.44
PTPN1-201ENST00000371621 PHKG2P15735 406 aa12.33□□□□□ -0.44
PTPN1-201ENST00000371621 S100A1P23297 94 aa12.33□□□□□ -0.44
PTPN1-201ENST00000371621 SPIDRQ14159 915 aa12.33□□□□□ -0.44
PTPN1-201ENST00000371621 ZNF394Q53GI3 561 aa12.33□□□□□ -0.44
PTPN1-201ENST00000371621 ZNF618Q5T7W0 954 aa12.33□□□□□ -0.44
PTPN1-201ENST00000371621 RBM15BQ8NDT2 890 aaKnown RBP12.33□□□□□ -0.44
PTPN1-201ENST00000371621 TSPAN14Q8NG11 270 aa12.33□□□□□ -0.44
PTPN1-201ENST00000371621 SYN2Q92777 582 aaPredicted RBP12.33□□□□□ -0.44
PTPN1-201ENST00000371621 PCDH18Q9HCL0 1135 aa12.33□□□□□ -0.44
PTPN1-201ENST00000371621 EFR3BQ9Y2G0 817 aa12.33□□□□□ -0.44
PTPN1-201ENST00000371621 GOLGA8QA0A0J9YX86 632 aa12.32□□□□□ -0.44
PTPN1-201ENST00000371621 GOLGA8OA6NCC3 632 aa12.32□□□□□ -0.44
PTPN1-201ENST00000371621 TRIM49D1C9J1S8 452 aa12.32□□□□□ -0.44
PTPN1-201ENST00000371621 GOLGA8NF8WBI6 632 aa12.32□□□□□ -0.44
PTPN1-201ENST00000371621 C6orf229H3BNL8 230 aa12.32□□□□□ -0.44
PTPN1-201ENST00000371621 FOXN3O00409 490 aaPredicted RBP12.32□□□□□ -0.44
PTPN1-201ENST00000371621 EDF1O60869 148 aaKnown RBP12.32□□□□□ -0.44
PTPN1-201ENST00000371621 TSPAN9O75954 239 aa12.32□□□□□ -0.44
PTPN1-201ENST00000371621 MFAP3P55082 362 aa12.32□□□□□ -0.44
PTPN1-201ENST00000371621 RGS21Q2M5E4 152 aa12.32□□□□□ -0.44
PTPN1-201ENST00000371621 FSCBQ5H9T9 825 aa12.32□□□□□ -0.44
PTPN1-201ENST00000371621 EIF1ADQ8N9N8 165 aaKnown RBP12.32□□□□□ -0.44
PTPN1-201ENST00000371621 RSL24D1Q9UHA3 163 aaKnown RBP12.32□□□□□ -0.44
PTPN1-201ENST00000371621 MROH5Q6ZUA9 1318 aa12.32□□□□□ -0.44
PTPN1-201ENST00000371621 CFAP99D6REC4 459 aa12.32□□□□□ -0.44
PTPN1-201ENST00000371621 E9PBE3 544 aa12.32□□□□□ -0.44
PTPN1-201ENST00000371621 CDK16Q00536 496 aa12.32□□□□□ -0.44
PTPN1-201ENST00000371621 NADK2Q4G0N4 442 aa12.32□□□□□ -0.44
PTPN1-201ENST00000371621 WDR78Q5VTH9 848 aa12.32□□□□□ -0.44
PTPN1-201ENST00000371621 ZSWIM2Q8NEG5 633 aa12.32□□□□□ -0.44
PTPN1-201ENST00000371621 DEPDC1BQ8WUY9 529 aa12.32□□□□□ -0.44
PTPN1-201ENST00000371621 ELMO3Q96BJ8 720 aa12.32□□□□□ -0.44
PTPN1-201ENST00000371621 ZFRQ96KR1 1074 aaKnown RBP12.32□□□□□ -0.44
PTPN1-201ENST00000371621 NT5C1BQ96P26 610 aa12.32□□□□□ -0.44
PTPN1-201ENST00000371621 MXD3Q9BW11 206 aa12.32□□□□□ -0.44
PTPN1-201ENST00000371621 INTS2Q9H0H0 1204 aaKnown RBP12.32□□□□□ -0.44
PTPN1-201ENST00000371621 TRPC7Q9HCX4 862 aa12.32□□□□□ -0.44
PTPN1-201ENST00000371621 CPS1P31327 1500 aa12.32□□□□□ -0.44
PTPN1-201ENST00000371621 USP6P35125 1406 aa12.32□□□□□ -0.44
PTPN1-201ENST00000371621 UBE4BO95155 1302 aa12.32□□□□□ -0.44
PTPN1-201ENST00000371621 FAM205AQ6ZU69 1335 aa12.32□□□□□ -0.44
PTPN1-201ENST00000371621 A0A0J9YVX5 310 aa12.32□□□□□ -0.44
PTPN1-201ENST00000371621 H3BSA7 217 aa12.32□□□□□ -0.44
PTPN1-201ENST00000371621 DEAF1O75398 565 aaPredicted RBP12.32□□□□□ -0.44
PTPN1-201ENST00000371621 CFBP00751 764 aa12.32□□□□□ -0.44
PTPN1-201ENST00000371621 RASA1P20936 1047 aa12.32□□□□□ -0.44
PTPN1-201ENST00000371621 ALDH1A3P47895 512 aa12.32□□□□□ -0.44
PTPN1-201ENST00000371621 PKNOX1P55347 436 aa12.32□□□□□ -0.44
PTPN1-201ENST00000371621 DLG1Q12959 904 aa12.32□□□□□ -0.44
PTPN1-201ENST00000371621 PKN1Q16512 942 aa12.32□□□□□ -0.44
PTPN1-201ENST00000371621 RABL6Q3YEC7 729 aaPredicted RBP12.32□□□□□ -0.44
PTPN1-201ENST00000371621 CROCCP3Q8IVE0 287 aa12.32□□□□□ -0.44
PTPN1-201ENST00000371621 SLC7A5P1Q8MH63 180 aa12.32□□□□□ -0.44
PTPN1-201ENST00000371621 FAF2Q96CS3 445 aa12.32□□□□□ -0.44
PTPN1-201ENST00000371621 GPATCH1Q9BRR8 931 aaKnown RBP12.32□□□□□ -0.44
PTPN1-201ENST00000371621 AP4B1Q9Y6B7 739 aa12.32□□□□□ -0.44
PTPN1-201ENST00000371621 MATN2O00339 956 aa12.31□□□□□ -0.44
PTPN1-201ENST00000371621 ZBTB11O95625 1053 aaPredicted RBP12.31□□□□□ -0.44
PTPN1-201ENST00000371621 NMT1P30419 496 aaKnown RBP12.31□□□□□ -0.44
PTPN1-201ENST00000371621 KPNA1P52294 538 aaPredicted RBP12.31□□□□□ -0.44
PTPN1-201ENST00000371621 SLC1A5Q15758 541 aa12.31□□□□□ -0.44
PTPN1-201ENST00000371621 GPR107Q5VW38 600 aa12.31□□□□□ -0.44
PTPN1-201ENST00000371621 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.31□□□□□ -0.44
PTPN1-201ENST00000371621 CATSPER1Q8NEC5 780 aa12.31□□□□□ -0.44
PTPN1-201ENST00000371621 CPA5Q8WXQ8 436 aa12.31□□□□□ -0.44
PTPN1-201ENST00000371621 CMTM5Q96DZ9 223 aa12.31□□□□□ -0.44
PTPN1-201ENST00000371621 TAS2R14Q9NYV8 317 aa12.31□□□□□ -0.44
PTPN1-201ENST00000371621 PTTG2Q9NZH5 202 aa12.31□□□□□ -0.44
PTPN1-201ENST00000371621 TMEM247A6NEH6 219 aa12.31□□□□□ -0.44
PTPN1-201ENST00000371621 M0R3G1 203 aa12.31□□□□□ -0.44
PTPN1-201ENST00000371621 HALP42357 657 aa12.31□□□□□ -0.44
PTPN1-201ENST00000371621 GEMIN4P57678 1058 aaKnown RBP12.31□□□□□ -0.44
PTPN1-201ENST00000371621 ADAM17P78536 824 aa12.31□□□□□ -0.44
PTPN1-201ENST00000371621 UBAP2LQ14157 1087 aaKnown RBP12.31□□□□□ -0.44
PTPN1-201ENST00000371621 MAPK6Q16659 721 aa12.31□□□□□ -0.44
PTPN1-201ENST00000371621 RSBN1Q5VWQ0 802 aaPredicted RBP12.31□□□□□ -0.44
PTPN1-201ENST00000371621 KLHDC10Q6PID8 442 aa12.31□□□□□ -0.44
PTPN1-201ENST00000371621 DQX1Q8TE96 717 aaKnown RBP12.31□□□□□ -0.44
PTPN1-201ENST00000371621 SLC20A1Q8WUM9 679 aa12.31□□□□□ -0.44
PTPN1-201ENST00000371621 RMND5BQ96G75 393 aaPredicted RBP12.31□□□□□ -0.44
PTPN1-201ENST00000371621 NUDT12Q9BQG2 462 aa12.31□□□□□ -0.44
PTPN1-201ENST00000371621 SH2D3AQ9BRG2 576 aa12.31□□□□□ -0.44
PTPN1-201ENST00000371621 C1orf112Q9NSG2 853 aa12.31□□□□□ -0.44
PTPN1-201ENST00000371621 PCSK1NQ9UHG2 260 aa12.31□□□□□ -0.44
PTPN1-201ENST00000371621 GGPS1O95749 300 aa12.31□□□□□ -0.44
PTPN1-201ENST00000371621 ZSCAN5DPP0CG00 497 aa12.31□□□□□ -0.44
PTPN1-201ENST00000371621 KRT3P12035 628 aa12.31□□□□□ -0.44
PTPN1-201ENST00000371621 BMP3P12645 472 aa12.31□□□□□ -0.44
PTPN1-201ENST00000371621 HIBADHP31937 336 aaKnown RBP12.31□□□□□ -0.44
PTPN1-201ENST00000371621 CASP5P51878 434 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms