RNA–Protein interactions for RNA: ENST00000368439.5

CKS1B-203, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best) BASIC

Gene CKS1B, Length 912 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-203ENST00000368439 PTPRDP23468 1912 aa20.34■□□□□ 0.85
CKS1B-203ENST00000368439 LRRIQ3A6PVS8 624 aaPredicted RBP20.34■□□□□ 0.85
CKS1B-203ENST00000368439 HAPLN1P10915 354 aaPredicted RBP20.34■□□□□ 0.85
CKS1B-203ENST00000368439 NPR3P17342 541 aa20.34■□□□□ 0.85
CKS1B-203ENST00000368439 FCARP24071 287 aa20.34■□□□□ 0.85
CKS1B-203ENST00000368439 ACAT1P24752 427 aaKnown RBP20.34■□□□□ 0.85
CKS1B-203ENST00000368439 ALDH1A3P47895 512 aa20.34■□□□□ 0.85
CKS1B-203ENST00000368439 EPHB3P54753 998 aa20.34■□□□□ 0.85
CKS1B-203ENST00000368439 FAM160A1Q05DH4 1040 aa20.34■□□□□ 0.85
CKS1B-203ENST00000368439 NFIL3Q16649 462 aa20.34■□□□□ 0.85
CKS1B-203ENST00000368439 INTS6LQ5JSJ4 861 aaKnown RBP20.34■□□□□ 0.85
CKS1B-203ENST00000368439 CYP4A22Q5TCH4 519 aa20.34■□□□□ 0.85
CKS1B-203ENST00000368439 SUGP1Q8IWZ8 645 aaKnown RBP20.34■□□□□ 0.85
CKS1B-203ENST00000368439 DCP1BQ8IZD4 617 aaKnown RBP20.34■□□□□ 0.85
CKS1B-203ENST00000368439 ADGRF2Q8IZF7 708 aa20.34■□□□□ 0.85
CKS1B-203ENST00000368439 GUF1Q8N442 669 aaKnown RBP20.34■□□□□ 0.85
CKS1B-203ENST00000368439 SPPL2BQ8TCT7 592 aa20.34■□□□□ 0.85
CKS1B-203ENST00000368439 PSMG2Q969U7 264 aa20.34■□□□□ 0.85
CKS1B-203ENST00000368439 ZNF334Q9HCZ1 680 aaPredicted RBP20.34■□□□□ 0.85
CKS1B-203ENST00000368439 SLC2A4RGQ9NR83 387 aa20.34■□□□□ 0.85
CKS1B-203ENST00000368439 WNT16Q9UBV4 365 aa20.34■□□□□ 0.85
CKS1B-203ENST00000368439 MAPK8IP1Q9UQF2 711 aa20.34■□□□□ 0.85
CKS1B-203ENST00000368439 ASB3Q9Y575 518 aa20.34■□□□□ 0.85
CKS1B-203ENST00000368439 GOLGA6L4A6NEF3 574 aa20.33■□□□□ 0.85
CKS1B-203ENST00000368439 STAU1O95793 577 aaKnown RBP20.33■□□□□ 0.85
CKS1B-203ENST00000368439 CFHP08603 1231 aa20.33■□□□□ 0.85
CKS1B-203ENST00000368439 MYL4P12829 197 aa20.33■□□□□ 0.85
CKS1B-203ENST00000368439 GJA1P17302 382 aa20.33■□□□□ 0.85
CKS1B-203ENST00000368439 LHX1P48742 406 aa20.33■□□□□ 0.85
CKS1B-203ENST00000368439 TUFMP49411 452 aaKnown RBP20.33■□□□□ 0.85
CKS1B-203ENST00000368439 DLG4P78352 724 aa20.33■□□□□ 0.85
CKS1B-203ENST00000368439 MYL7Q01449 175 aa20.33■□□□□ 0.85
CKS1B-203ENST00000368439 TSPY1Q01534 308 aa20.33■□□□□ 0.85
CKS1B-203ENST00000368439 CCDC142Q17RM4 750 aa20.33■□□□□ 0.85
CKS1B-203ENST00000368439 ZCWPW2Q504Y3 356 aa20.33■□□□□ 0.85
CKS1B-203ENST00000368439 IER5LQ5T953 404 aa20.33■□□□□ 0.85
CKS1B-203ENST00000368439 DNAJB7Q7Z6W7 309 aaPredicted RBP20.33■□□□□ 0.85
CKS1B-203ENST00000368439 SPATA20Q8TB22 786 aa20.33■□□□□ 0.85
CKS1B-203ENST00000368439 SHKBP1Q8TBC3 707 aa20.33■□□□□ 0.85
CKS1B-203ENST00000368439 ZSWIM3Q96MP5 696 aa20.33■□□□□ 0.85
CKS1B-203ENST00000368439 SEPT5Q99719 369 aaPredicted RBP20.33■□□□□ 0.85
CKS1B-203ENST00000368439 KXD1Q9BQD3 176 aa20.33■□□□□ 0.85
CKS1B-203ENST00000368439 LPIN3Q9BQK8 851 aa20.33■□□□□ 0.85
CKS1B-203ENST00000368439 PLA2G2FQ9BZM2 168 aa20.33■□□□□ 0.85
CKS1B-203ENST00000368439 XYLT2Q9H1B5 865 aa20.33■□□□□ 0.85
CKS1B-203ENST00000368439 CIZ1Q9ULV3 898 aaPredicted RBP20.33■□□□□ 0.85
CKS1B-203ENST00000368439 OBSL1O75147 1896 aa20.33■□□□□ 0.84
CKS1B-203ENST00000368439 KRBA1A5PL33 1030 aa20.32■□□□□ 0.84
CKS1B-203ENST00000368439 CALUO43852 315 aaPredicted RBP20.32■□□□□ 0.84
CKS1B-203ENST00000368439 ECI2O75521 394 aa20.32■□□□□ 0.84
CKS1B-203ENST00000368439 KIF20AO95235 890 aa20.32■□□□□ 0.84
CKS1B-203ENST00000368439 C4BPAP04003 597 aaKnown RBP20.32■□□□□ 0.84
CKS1B-203ENST00000368439 WARSP23381 471 aaKnown RBP20.32■□□□□ 0.84
CKS1B-203ENST00000368439 LMO2P25791 158 aa20.32■□□□□ 0.84
CKS1B-203ENST00000368439 AVPR2P30518 371 aa20.32■□□□□ 0.84
CKS1B-203ENST00000368439 GPC5P78333 572 aa20.32■□□□□ 0.84
CKS1B-203ENST00000368439 MGAT5BQ3V5L5 792 aa20.32■□□□□ 0.84
CKS1B-203ENST00000368439 C1orf220Q5T0J3 134 aa20.32■□□□□ 0.84
CKS1B-203ENST00000368439 TDRD10Q5VZ19 366 aaKnown RBP20.32■□□□□ 0.84
CKS1B-203ENST00000368439 CWF19L1Q69YN2 538 aaKnown RBP20.32■□□□□ 0.84
CKS1B-203ENST00000368439 TANGO2Q6ICL3 276 aa20.32■□□□□ 0.84
CKS1B-203ENST00000368439 FAM171BQ6P995 826 aa20.32■□□□□ 0.84
CKS1B-203ENST00000368439 GPR152Q8TDT2 470 aa20.32■□□□□ 0.84
CKS1B-203ENST00000368439 TIGD1Q96MW7 591 aa20.32■□□□□ 0.84
CKS1B-203ENST00000368439 KCNH6Q9H252 994 aa20.32■□□□□ 0.84
CKS1B-203ENST00000368439 ABI2Q9NYB9 513 aaPredicted RBP20.32■□□□□ 0.84
CKS1B-203ENST00000368439 R3HCC1Q9Y3T6 440 aaKnown RBP20.32■□□□□ 0.84
CKS1B-203ENST00000368439 NME7Q9Y5B8 376 aa20.32■□□□□ 0.84
CKS1B-203ENST00000368439 PCDHB5Q9Y5E4 795 aa20.32■□□□□ 0.84
CKS1B-203ENST00000368439 GREB1Q4ZG55 1949 aa20.31■□□□□ 0.84
CKS1B-203ENST00000368439 NUP210Q8TEM1 1887 aaPredicted RBP20.31■□□□□ 0.84
CKS1B-203ENST00000368439 VNN1O95497 513 aa20.31■□□□□ 0.84
CKS1B-203ENST00000368439 AP3M2P53677 418 aa20.31■□□□□ 0.84
CKS1B-203ENST00000368439 MYL6P60660 151 aa20.31■□□□□ 0.84
CKS1B-203ENST00000368439 TEAD2Q15562 447 aa20.31■□□□□ 0.84
CKS1B-203ENST00000368439 NFE2Q16621 373 aaPredicted RBP20.31■□□□□ 0.84
CKS1B-203ENST00000368439 FAM78AQ5JUQ0 283 aa20.31■□□□□ 0.84
CKS1B-203ENST00000368439 GAREM2Q75VX8 874 aa20.31■□□□□ 0.84
CKS1B-203ENST00000368439 SMYD4Q8IYR2 804 aaPredicted RBP20.31■□□□□ 0.84
CKS1B-203ENST00000368439 SIX5Q8N196 739 aa20.31■□□□□ 0.84
CKS1B-203ENST00000368439 TMC2Q8TDI7 906 aa20.31■□□□□ 0.84
CKS1B-203ENST00000368439 ASB16Q96NS5 453 aa20.31■□□□□ 0.84
CKS1B-203ENST00000368439 VRTNQ9H8Y1 702 aa20.31■□□□□ 0.84
CKS1B-203ENST00000368439 IL21Q9HBE4 155 aa20.31■□□□□ 0.84
CKS1B-203ENST00000368439 GTF3C4Q9UKN8 822 aa20.31■□□□□ 0.84
CKS1B-203ENST00000368439 COL4A3Q01955 1670 aa20.3■□□□□ 0.84
CKS1B-203ENST00000368439 A0A1W2PRU2 124 aa20.3■□□□□ 0.84
CKS1B-203ENST00000368439 MYBPHLA2RUH7 354 aa20.3■□□□□ 0.84
CKS1B-203ENST00000368439 MAPK13O15264 365 aa20.3■□□□□ 0.84
CKS1B-203ENST00000368439 ATP2C2O75185 946 aa20.3■□□□□ 0.84
CKS1B-203ENST00000368439 TACC1O75410 805 aa20.3■□□□□ 0.84
CKS1B-203ENST00000368439 AKAP3O75969 853 aa20.3■□□□□ 0.84
CKS1B-203ENST00000368439 FAM163BP0C2L3 166 aa20.3■□□□□ 0.84
CKS1B-203ENST00000368439 PCSK1P29120 753 aa20.3■□□□□ 0.84
CKS1B-203ENST00000368439 ATICP31939 592 aa20.3■□□□□ 0.84
CKS1B-203ENST00000368439 GPR15P49685 360 aa20.3■□□□□ 0.84
CKS1B-203ENST00000368439 MCCD1P59942 119 aaPredicted RBP20.3■□□□□ 0.84
CKS1B-203ENST00000368439 CEP135Q66GS9 1140 aa20.3■□□□□ 0.84
CKS1B-203ENST00000368439 TMEM105Q8N8V8 129 aa20.3■□□□□ 0.84
CKS1B-203ENST00000368439 ERCC4Q92889 916 aaPredicted RBP20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms