RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 HSPA9P38646 679 aaKnown RBP13.99□□□□□ -0.17
SQSTM1-201ENST00000360718 RNASE9P60153 205 aaKnown RBP13.99□□□□□ -0.17
SQSTM1-201ENST00000360718 YWHAEP62258 255 aaKnown RBP13.99□□□□□ -0.17
SQSTM1-201ENST00000360718 ZBTB6Q15916 424 aa13.99□□□□□ -0.17
SQSTM1-201ENST00000360718 ZNF667Q5HYK9 610 aa13.99□□□□□ -0.17
SQSTM1-201ENST00000360718 LRIG3Q6UXM1 1119 aa13.99□□□□□ -0.17
SQSTM1-201ENST00000360718 PEX26Q7Z412 305 aa13.99□□□□□ -0.17
SQSTM1-201ENST00000360718 DNAAF5Q86Y56 855 aa13.99□□□□□ -0.17
SQSTM1-201ENST00000360718 TPCN2Q8NHX9 752 aa13.99□□□□□ -0.17
SQSTM1-201ENST00000360718 C18orf25Q96B23 403 aaPredicted RBP13.99□□□□□ -0.17
SQSTM1-201ENST00000360718 TUBGCP4Q9UGJ1 667 aa13.99□□□□□ -0.17
SQSTM1-201ENST00000360718 PCDHB4Q9Y5E5 795 aa13.99□□□□□ -0.17
SQSTM1-201ENST00000360718 PCDHB2Q9Y5E7 798 aa13.99□□□□□ -0.17
SQSTM1-201ENST00000360718 TET1Q8NFU7 2136 aa13.99□□□□□ -0.17
SQSTM1-201ENST00000360718 ACO1P21399 889 aaKnown RBP13.98□□□□□ -0.17
SQSTM1-201ENST00000360718 AFF1P51825 1210 aaKnown RBP13.98□□□□□ -0.17
SQSTM1-201ENST00000360718 RBP5P82980 135 aa13.98□□□□□ -0.17
SQSTM1-201ENST00000360718 HLTFQ14527 1009 aaKnown RBP eCLIP13.98□□□□□ -0.17
SQSTM1-201ENST00000360718 DSC3Q14574 896 aa13.98□□□□□ -0.17
SQSTM1-201ENST00000360718 GPNMBQ14956 572 aa13.98□□□□□ -0.17
SQSTM1-201ENST00000360718 SKIDA1Q1XH10 827 aa13.98□□□□□ -0.17
SQSTM1-201ENST00000360718 TTC31Q49AM3 519 aaPredicted RBP13.98□□□□□ -0.17
SQSTM1-201ENST00000360718 GLYCTKQ8IVS8 523 aa13.98□□□□□ -0.17
SQSTM1-201ENST00000360718 ARFGAP2Q8N6H7 521 aa13.98□□□□□ -0.17
SQSTM1-201ENST00000360718 LRRC57Q8N9N7 239 aa13.98□□□□□ -0.17
SQSTM1-201ENST00000360718 BEST2Q8NFU1 509 aa13.98□□□□□ -0.17
SQSTM1-201ENST00000360718 CCDC26Q8TAB7 109 aa13.98□□□□□ -0.17
SQSTM1-201ENST00000360718 SLC20A1Q8WUM9 679 aa13.98□□□□□ -0.17
SQSTM1-201ENST00000360718 LPPQ93052 612 aa13.98□□□□□ -0.17
SQSTM1-201ENST00000360718 ARMC5Q96C12 935 aa13.98□□□□□ -0.17
SQSTM1-201ENST00000360718 FAXDC2Q96IV6 333 aa13.98□□□□□ -0.17
SQSTM1-201ENST00000360718 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.98□□□□□ -0.177e-11■■□□□ 13.1
SQSTM1-201ENST00000360718 FAM105AQ9NUU6 356 aa13.98□□□□□ -0.17
SQSTM1-201ENST00000360718 CNTN3Q9P232 1028 aa13.98□□□□□ -0.17
SQSTM1-201ENST00000360718 FAM170AA1A519 330 aa13.98□□□□□ -0.17
SQSTM1-201ENST00000360718 PPEF2O14830 753 aa13.98□□□□□ -0.17
SQSTM1-201ENST00000360718 PQBP1O60828 265 aaKnown RBP13.98□□□□□ -0.17
SQSTM1-201ENST00000360718 KRT14P02533 472 aa13.98□□□□□ -0.17
SQSTM1-201ENST00000360718 MAATS1Q7Z4T9 603 aa13.98□□□□□ -0.17
SQSTM1-201ENST00000360718 SLFN11Q7Z7L1 901 aa13.98□□□□□ -0.17
SQSTM1-201ENST00000360718 SLC47A2Q86VL8 602 aa13.98□□□□□ -0.17
SQSTM1-201ENST00000360718 PALB2Q86YC2 1186 aa13.98□□□□□ -0.17
SQSTM1-201ENST00000360718 LNX1Q8TBB1 728 aaPredicted RBP13.98□□□□□ -0.17
SQSTM1-201ENST00000360718 ATP6V1G3Q96LB4 118 aa13.98□□□□□ -0.17
SQSTM1-201ENST00000360718 ZFP42Q96MM3 310 aa13.98□□□□□ -0.17
SQSTM1-201ENST00000360718 POLIQ9UNA4 740 aa13.98□□□□□ -0.17
SQSTM1-201ENST00000360718 AGAP1Q9UPQ3 857 aa13.98□□□□□ -0.17
SQSTM1-201ENST00000360718 SCN5AQ14524 2016 aa13.97□□□□□ -0.17
SQSTM1-201ENST00000360718 ZSCAN5CA6NGD5 496 aaPredicted RBP13.97□□□□□ -0.17
SQSTM1-201ENST00000360718 DDX3XO00571 662 aaKnown RBP eCLIP13.97□□□□□ -0.17
SQSTM1-201ENST00000360718 CYP11B1P15538 503 aa13.97□□□□□ -0.17
SQSTM1-201ENST00000360718 POLR2BP30876 1174 aaKnown RBP13.97□□□□□ -0.17
SQSTM1-201ENST00000360718 MYO1EQ12965 1108 aa13.97□□□□□ -0.17
SQSTM1-201ENST00000360718 WDR72Q3MJ13 1102 aa13.97□□□□□ -0.17
SQSTM1-201ENST00000360718 XKR4Q5GH76 650 aa13.97□□□□□ -0.17
SQSTM1-201ENST00000360718 SMYD5Q6GMV2 418 aa13.97□□□□□ -0.17
SQSTM1-201ENST00000360718 TMEM270Q6UE05 265 aa13.97□□□□□ -0.17
SQSTM1-201ENST00000360718 RPUSD2Q8IZ73 545 aaKnown RBP13.97□□□□□ -0.17
SQSTM1-201ENST00000360718 EPS8L1Q8TE68 723 aa13.97□□□□□ -0.17
SQSTM1-201ENST00000360718 IPO4Q8TEX9 1081 aaKnown RBP13.97□□□□□ -0.17
SQSTM1-201ENST00000360718 SLITRK6Q9H5Y7 841 aa13.97□□□□□ -0.17
SQSTM1-201ENST00000360718 NXF1Q9UBU9 619 aaKnown RBP13.97□□□□□ -0.17
SQSTM1-201ENST00000360718 UBQLN1Q9UMX0 589 aaKnown RBP13.97□□□□□ -0.17
SQSTM1-201ENST00000360718 SMIM28A0A1B0GU29 152 aa13.97□□□□□ -0.17
SQSTM1-201ENST00000360718 KRIT1O00522 736 aa13.97□□□□□ -0.17
SQSTM1-201ENST00000360718 NDUFAB1O14561 156 aa13.97□□□□□ -0.17
SQSTM1-201ENST00000360718 TLR3O15455 904 aaKnown RBP13.97□□□□□ -0.17
SQSTM1-201ENST00000360718 ATF7P17544 494 aaPredicted RBP13.97□□□□□ -0.17
SQSTM1-201ENST00000360718 RAB27AP51159 221 aa13.97□□□□□ -0.17
SQSTM1-201ENST00000360718 SOX4Q06945 474 aaPredicted RBP13.97□□□□□ -0.17
SQSTM1-201ENST00000360718 MTMR3Q13615 1198 aa13.97□□□□□ -0.17
SQSTM1-201ENST00000360718 KCTD16Q68DU8 428 aa13.97□□□□□ -0.17
SQSTM1-201ENST00000360718 MICALCLQ6ZW33 695 aa13.97□□□□□ -0.17
SQSTM1-201ENST00000360718 NOP9Q86U38 636 aaKnown RBP13.97□□□□□ -0.17
SQSTM1-201ENST00000360718 RTN4RL1Q86UN2 441 aaPredicted RBP13.97□□□□□ -0.17
SQSTM1-201ENST00000360718 ZNF677Q86XU0 584 aa13.97□□□□□ -0.17
SQSTM1-201ENST00000360718 RASGEF1CQ8N431 466 aa13.97□□□□□ -0.17
SQSTM1-201ENST00000360718 UBR7Q8N806 425 aa13.97□□□□□ -0.17
SQSTM1-201ENST00000360718 GSTCDQ8NEC7 633 aa13.97□□□□□ -0.17
SQSTM1-201ENST00000360718 SLC30A5Q8TAD4 765 aa13.97□□□□□ -0.17
SQSTM1-201ENST00000360718 PIK3R5Q8WYR1 880 aa13.97□□□□□ -0.17
SQSTM1-201ENST00000360718 HPDLQ96IR7 371 aa13.97□□□□□ -0.17
SQSTM1-201ENST00000360718 NOCTQ9UK39 431 aaKnown RBP13.97□□□□□ -0.17
SQSTM1-201ENST00000360718 PLAAQ9Y263 795 aa13.97□□□□□ -0.17
SQSTM1-201ENST00000360718 FAM169AQ9Y6X4 670 aa13.97□□□□□ -0.17
SQSTM1-201ENST00000360718 SRRM3A6NNA2 597 aaPredicted RBP13.96□□□□□ -0.17
SQSTM1-201ENST00000360718 PTGESO14684 152 aa13.96□□□□□ -0.17
SQSTM1-201ENST00000360718 COL6A1P12109 1028 aa13.96□□□□□ -0.17
SQSTM1-201ENST00000360718 ITGA4P13612 1032 aa13.96□□□□□ -0.17
SQSTM1-201ENST00000360718 KCNE1P15382 129 aa13.96□□□□□ -0.17
SQSTM1-201ENST00000360718 NR1D1P20393 614 aa13.96□□□□□ -0.17
SQSTM1-201ENST00000360718 ASPAP45381 313 aa13.96□□□□□ -0.17
SQSTM1-201ENST00000360718 CDR2Q01850 454 aa13.96□□□□□ -0.17
SQSTM1-201ENST00000360718 CLUL1Q15846 466 aa13.96□□□□□ -0.17
SQSTM1-201ENST00000360718 SLC39A5Q6ZMH5 540 aa13.96□□□□□ -0.17
SQSTM1-201ENST00000360718 SCARA5Q6ZMJ2 495 aa13.96□□□□□ -0.17
SQSTM1-201ENST00000360718 DAAM2Q86T65 1068 aa13.96□□□□□ -0.17
SQSTM1-201ENST00000360718 TADA2BQ86TJ2 420 aa13.96□□□□□ -0.17
SQSTM1-201ENST00000360718 LINC01599Q8WXQ3 324 aa13.96□□□□□ -0.17
SQSTM1-201ENST00000360718 ADAM2Q99965 735 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms