RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 ACOT1Q86TX2 421 aa21.18■□□□□ 0.98
CLN3-205ENST00000359984 DPEP3Q9H4B8 488 aa21.18■□□□□ 0.98
CLN3-205ENST00000359984 CWH43Q9H720 699 aa21.18■□□□□ 0.98
CLN3-205ENST00000359984 CXXC1Q9P0U4 656 aaPredicted RBP21.18■□□□□ 0.98
CLN3-205ENST00000359984 FAN1Q9Y2M0 1017 aa21.18■□□□□ 0.98
CLN3-205ENST00000359984 CCP110O43303 1012 aa21.17■□□□□ 0.98
CLN3-205ENST00000359984 VDRP11473 427 aa21.17■□□□□ 0.98
CLN3-205ENST00000359984 VAV2P52735 878 aa21.17■□□□□ 0.98
CLN3-205ENST00000359984 KIAA1328Q86T90 577 aa21.17■□□□□ 0.98
CLN3-205ENST00000359984 LBHD1Q9BQE6 289 aaPredicted RBP21.17■□□□□ 0.98
CLN3-205ENST00000359984 COLEC11Q9BWP8 271 aa21.17■□□□□ 0.98
CLN3-205ENST00000359984 MARCH5Q9NX47 278 aa21.17■□□□□ 0.98
CLN3-205ENST00000359984 KIAA1257Q9ULG3 409 aa21.17■□□□□ 0.98
CLN3-205ENST00000359984 FAM170AA1A519 330 aa21.16■□□□□ 0.98
CLN3-205ENST00000359984 TMCO5BA8MYB1 307 aa21.16■□□□□ 0.98
CLN3-205ENST00000359984 TADA2AO75478 443 aa21.16■□□□□ 0.98
CLN3-205ENST00000359984 CYP11A1P05108 521 aa21.16■□□□□ 0.98
CLN3-205ENST00000359984 PBX3P40426 434 aa21.16■□□□□ 0.98
CLN3-205ENST00000359984 BCAR1P56945 870 aa21.16■□□□□ 0.98
CLN3-205ENST00000359984 CRYBG2Q8N1P7 616 aa21.16■□□□□ 0.98
CLN3-205ENST00000359984 LACRTQ9GZZ8 138 aa21.16■□□□□ 0.98
CLN3-205ENST00000359984 PDCL3Q9H2J4 239 aa21.16■□□□□ 0.98
CLN3-205ENST00000359984 ABL1P00519 1130 aa21.15■□□□□ 0.98
CLN3-205ENST00000359984 CLEC16AQ2KHT3 1053 aa21.15■□□□□ 0.98
CLN3-205ENST00000359984 C10orf76Q5T2E6 689 aa21.15■□□□□ 0.98
CLN3-205ENST00000359984 CMTR2Q8IYT2 770 aaKnown RBP21.15■□□□□ 0.98
CLN3-205ENST00000359984 C12orf29Q8N999 325 aa21.15■□□□□ 0.98
CLN3-205ENST00000359984 HERVK_113Q902F9 699 aa21.15■□□□□ 0.98
CLN3-205ENST00000359984 CYFIP2Q96F07 1278 aa21.15■□□□□ 0.98
CLN3-205ENST00000359984 LPIN3Q9BQK8 851 aa21.15■□□□□ 0.98
CLN3-205ENST00000359984 PACSIN1Q9BY11 444 aa21.15■□□□□ 0.98
CLN3-205ENST00000359984 DDX43Q9NXZ2 648 aaKnown RBP21.15■□□□□ 0.98
CLN3-205ENST00000359984 ADAM28Q9UKQ2 775 aa21.15■□□□□ 0.98
CLN3-205ENST00000359984 PCDHB8Q9UN66 801 aa21.15■□□□□ 0.98
CLN3-205ENST00000359984 NT5C1B-RDH14C9J2C7 533 aa21.15■□□□□ 0.98
CLN3-205ENST00000359984 MED7O43513 233 aa21.15■□□□□ 0.98
CLN3-205ENST00000359984 CYP1A1P04798 512 aaPredicted RBP21.15■□□□□ 0.98
CLN3-205ENST00000359984 GZMAP12544 262 aa21.15■□□□□ 0.98
CLN3-205ENST00000359984 ARHGAP25P42331 645 aa21.15■□□□□ 0.98
CLN3-205ENST00000359984 LHX1P48742 406 aa21.15■□□□□ 0.98
CLN3-205ENST00000359984 SGO2Q562F6 1265 aa21.15■□□□□ 0.98
CLN3-205ENST00000359984 TRIM72Q6ZMU5 477 aa21.15■□□□□ 0.98
CLN3-205ENST00000359984 PASD1Q8IV76 773 aa21.15■□□□□ 0.98
CLN3-205ENST00000359984 DSEQ9UL01 958 aa21.15■□□□□ 0.98
CLN3-205ENST00000359984 PCDHGC3Q9UN70 934 aa21.15■□□□□ 0.98
CLN3-205ENST00000359984 O00370 1275 aa21.14■□□□□ 0.97
CLN3-205ENST00000359984 TRAPPC3O43617 180 aa21.14■□□□□ 0.97
CLN3-205ENST00000359984 UNGP13051 313 aaPredicted RBP21.14■□□□□ 0.97
CLN3-205ENST00000359984 TYMPP19971 482 aa21.14■□□□□ 0.97
CLN3-205ENST00000359984 ACAT1P24752 427 aaKnown RBP21.14■□□□□ 0.97
CLN3-205ENST00000359984 BTG3Q14201 252 aaPredicted RBP21.14■□□□□ 0.97
CLN3-205ENST00000359984 CNGA2Q16280 664 aa21.14■□□□□ 0.97
CLN3-205ENST00000359984 METTL23Q86XA0 190 aa21.14■□□□□ 0.97
CLN3-205ENST00000359984 SPATA18Q8TC71 538 aa21.14■□□□□ 0.97
CLN3-205ENST00000359984 YME1L1Q96TA2 773 aa21.14■□□□□ 0.97
CLN3-205ENST00000359984 ISCUQ9H1K1 167 aa21.14■□□□□ 0.97
CLN3-205ENST00000359984 LUC7LQ9NQ29 371 aaKnown RBP21.14■□□□□ 0.97
CLN3-205ENST00000359984 LZTFL1Q9NQ48 299 aa21.14■□□□□ 0.97
CLN3-205ENST00000359984 TRIM10Q9UDY6 481 aa21.14■□□□□ 0.97
CLN3-205ENST00000359984 ARHGEF37A1IGU5 675 aa21.13■□□□□ 0.97
CLN3-205ENST00000359984 RTN2O75298 545 aa21.13■□□□□ 0.97
CLN3-205ENST00000359984 FTLP02792 175 aaPredicted RBP21.13■□□□□ 0.97
CLN3-205ENST00000359984 H2AFZP0C0S5 128 aa21.13■□□□□ 0.97
CLN3-205ENST00000359984 ZNF662Q6ZS27 426 aa21.13■□□□□ 0.97
CLN3-205ENST00000359984 H2AFVQ71UI9 128 aa21.13■□□□□ 0.97
CLN3-205ENST00000359984 TMEM173Q86WV6 379 aaPredicted RBP21.13■□□□□ 0.97
CLN3-205ENST00000359984 TNIP3Q96KP6 325 aa21.13■□□□□ 0.97
CLN3-205ENST00000359984 RTP3Q9BQQ7 232 aa21.13■□□□□ 0.97
CLN3-205ENST00000359984 GPR62Q9BZJ7 368 aa21.13■□□□□ 0.97
CLN3-205ENST00000359984 WDR3Q9UNX4 943 aaKnown RBP eCLIP21.13■□□□□ 0.97
CLN3-205ENST00000359984 PTPRSQ13332 1948 aa21.13■□□□□ 0.97
CLN3-205ENST00000359984 ATP2C2O75185 946 aa21.13■□□□□ 0.97
CLN3-205ENST00000359984 GJB5O95377 273 aa21.13■□□□□ 0.97
CLN3-205ENST00000359984 ALDH7A1P49419 539 aaKnown RBP21.13■□□□□ 0.97
CLN3-205ENST00000359984 GALCP54803 685 aa21.13■□□□□ 0.97
CLN3-205ENST00000359984 NOMO3P69849 1222 aa21.13■□□□□ 0.97
CLN3-205ENST00000359984 KIAA0319Q5VV43 1072 aa21.13■□□□□ 0.97
CLN3-205ENST00000359984 NAA35Q5VZE5 725 aa21.13■□□□□ 0.97
CLN3-205ENST00000359984 ACAD10Q6JQN1 1059 aa21.13■□□□□ 0.97
CLN3-205ENST00000359984 DENND1BQ6P3S1 775 aa21.13■□□□□ 0.97
CLN3-205ENST00000359984 B3GALNT2Q8NCR0 500 aa21.13■□□□□ 0.97
CLN3-205ENST00000359984 BCL7CQ8WUZ0 217 aaPredicted RBP21.13■□□□□ 0.97
CLN3-205ENST00000359984 CPA5Q8WXQ8 436 aa21.13■□□□□ 0.97
CLN3-205ENST00000359984 FAM49BQ9NUQ9 324 aa21.13■□□□□ 0.97
CLN3-205ENST00000359984 MRPL42Q9Y6G3 142 aaKnown RBP21.13■□□□□ 0.97
CLN3-205ENST00000359984 DUSP10Q9Y6W6 482 aa21.13■□□□□ 0.97
CLN3-205ENST00000359984 GOLGA6L9A6NEM1 432 aa21.12■□□□□ 0.97
CLN3-205ENST00000359984 PJA2O43164 708 aa21.12■□□□□ 0.97
CLN3-205ENST00000359984 MICAL2O94851 1124 aa21.12■□□□□ 0.97
CLN3-205ENST00000359984 PTPN1P18031 435 aaKnown RBP21.12■□□□□ 0.97
CLN3-205ENST00000359984 TKTP29401 623 aaKnown RBP21.12■□□□□ 0.97
CLN3-205ENST00000359984 PSMC1P62191 440 aaKnown RBP21.12■□□□□ 0.97
CLN3-205ENST00000359984 PPP1R26Q5T8A7 1209 aaPredicted RBP21.12■□□□□ 0.97
CLN3-205ENST00000359984 OVOS1Q6IE37 1185 aa21.12■□□□□ 0.97
CLN3-205ENST00000359984 LCLAT1Q6UWP7 414 aa21.12■□□□□ 0.97
CLN3-205ENST00000359984 DNAI2Q9GZS0 605 aa21.12■□□□□ 0.97
CLN3-205ENST00000359984 SLC4A7Q9Y6M7 1214 aa21.12■□□□□ 0.97
CLN3-205ENST00000359984 LSM8O95777 96 aaKnown RBP21.11■□□□□ 0.97
CLN3-205ENST00000359984 HTRA4P83105 476 aaPredicted RBP21.11■□□□□ 0.97
CLN3-205ENST00000359984 KIF5AQ12840 1032 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 94.8 ms