RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 C3orf58Q8NDZ4 430 aa19.85■□□□□ 0.77
CLN3-204ENST00000357857 RABGGTAQ92696 567 aa19.85■□□□□ 0.77
CLN3-204ENST00000357857 DNAI2Q9GZS0 605 aa19.85■□□□□ 0.77
CLN3-204ENST00000357857 LHX5Q9H2C1 402 aa19.85■□□□□ 0.77
CLN3-204ENST00000357857 OSGEPQ9NPF4 335 aa19.85■□□□□ 0.77
CLN3-204ENST00000357857 CTTNBP2NLQ9P2B4 639 aa19.85■□□□□ 0.77
CLN3-204ENST00000357857 KANSL3Q9P2N6 904 aa19.85■□□□□ 0.77
CLN3-204ENST00000357857 LRFN2Q9ULH4 789 aa19.85■□□□□ 0.77
CLN3-204ENST00000357857 JRKLQ9Y4A0 524 aa19.85■□□□□ 0.77
CLN3-204ENST00000357857 MYBL1P10243 752 aa19.84■□□□□ 0.77
CLN3-204ENST00000357857 RFC2P35250 354 aa19.84■□□□□ 0.77
CLN3-204ENST00000357857 CNGA2Q16280 664 aa19.84■□□□□ 0.77
CLN3-204ENST00000357857 DSTYKQ6XUX3 929 aa19.84■□□□□ 0.77
CLN3-204ENST00000357857 ACOT1Q86TX2 421 aa19.84■□□□□ 0.77
CLN3-204ENST00000357857 C1orf131Q8NDD1 294 aaKnown RBP19.84■□□□□ 0.77
CLN3-204ENST00000357857 CALR3Q96L12 384 aaKnown RBP19.84■□□□□ 0.77
CLN3-204ENST00000357857 MCOLN1Q9GZU1 580 aa19.84■□□□□ 0.77
CLN3-204ENST00000357857 CNOT8Q9UFF9 292 aaKnown RBP19.84■□□□□ 0.77
CLN3-204ENST00000357857 WDR3Q9UNX4 943 aaKnown RBP eCLIP19.84■□□□□ 0.77
CLN3-204ENST00000357857 O00370 1275 aa19.83■□□□□ 0.77
CLN3-204ENST00000357857 ENC1O14682 589 aa19.83■□□□□ 0.77
CLN3-204ENST00000357857 ATMINO43313 823 aaPredicted RBP19.83■□□□□ 0.77
CLN3-204ENST00000357857 MICAL2O94851 1124 aa19.83■□□□□ 0.77
CLN3-204ENST00000357857 ATP1A1P05023 1023 aaKnown RBP19.83■□□□□ 0.77
CLN3-204ENST00000357857 PAX3P23760 479 aa19.83■□□□□ 0.77
CLN3-204ENST00000357857 AARSP49588 968 aaKnown RBP eCLIP19.83■□□□□ 0.77
CLN3-204ENST00000357857 HADHBP55084 474 aaKnown RBP19.83■□□□□ 0.77
CLN3-204ENST00000357857 STILQ15468 1287 aa19.83■□□□□ 0.77
CLN3-204ENST00000357857 ABI1Q8IZP0 508 aa19.83■□□□□ 0.77
CLN3-204ENST00000357857 VCPIP1Q96JH7 1222 aa19.83■□□□□ 0.77
CLN3-204ENST00000357857 C11orf70Q9BRQ4 267 aa19.83■□□□□ 0.77
CLN3-204ENST00000357857 ADAM22Q9P0K1 906 aa19.83■□□□□ 0.77
CLN3-204ENST00000357857 TSC2P49815 1807 aa19.83■□□□□ 0.76
CLN3-204ENST00000357857 LOC101059915A0A1B0GWI6 518 aaPredicted RBP19.82■□□□□ 0.76
CLN3-204ENST00000357857 B3GAT3O94766 335 aa19.82■□□□□ 0.76
CLN3-204ENST00000357857 C1QBPQ07021 282 aaKnown RBP19.82■□□□□ 0.76
CLN3-204ENST00000357857 DSC1Q08554 894 aa19.82■□□□□ 0.76
CLN3-204ENST00000357857 LIN9Q5TKA1 542 aa19.82■□□□□ 0.76
CLN3-204ENST00000357857 WSCD1Q658N2 575 aa19.82■□□□□ 0.76
CLN3-204ENST00000357857 CNKSR3Q6P9H4 555 aa19.82■□□□□ 0.76
CLN3-204ENST00000357857 OSTM1Q86WC4 334 aa19.82■□□□□ 0.76
CLN3-204ENST00000357857 WDTC1Q8N5D0 677 aa19.82■□□□□ 0.76
CLN3-204ENST00000357857 L2HGDHQ9H9P8 463 aa19.82■□□□□ 0.76
CLN3-204ENST00000357857 AVENQ9NQS1 362 aaPredicted RBP19.82■□□□□ 0.76
CLN3-204ENST00000357857 TBC1D13Q9NVG8 400 aa19.82■□□□□ 0.76
CLN3-204ENST00000357857 RNF216Q9NWF9 866 aaPredicted RBP19.82■□□□□ 0.76
CLN3-204ENST00000357857 COG5Q9UP83 839 aa19.82■□□□□ 0.76
CLN3-204ENST00000357857 STXBP5LQ9Y2K9 1186 aa19.82■□□□□ 0.76
CLN3-204ENST00000357857 FNDC1Q4ZHG4 1894 aaPredicted RBP19.82■□□□□ 0.76
CLN3-204ENST00000357857 RIOK3O14730 519 aaKnown RBP19.82■□□□□ 0.76
CLN3-204ENST00000357857 HOXA2O43364 376 aa19.82■□□□□ 0.76
CLN3-204ENST00000357857 HCRTO43612 131 aa19.82■□□□□ 0.76
CLN3-204ENST00000357857 MTA2O94776 668 aa19.82■□□□□ 0.76
CLN3-204ENST00000357857 DDHD2O94830 711 aa19.82■□□□□ 0.76
CLN3-204ENST00000357857 PDGFRBP09619 1106 aa19.82■□□□□ 0.76
CLN3-204ENST00000357857 MMP8P22894 467 aa19.82■□□□□ 0.76
CLN3-204ENST00000357857 LMO2P25791 158 aa19.82■□□□□ 0.76
CLN3-204ENST00000357857 RNASELQ05823 741 aaKnown RBP19.82■□□□□ 0.76
CLN3-204ENST00000357857 PAPD7Q5XG87 772 aaKnown RBP19.82■□□□□ 0.76
CLN3-204ENST00000357857 DCLRE1AQ6PJP8 1040 aa19.82■□□□□ 0.76
CLN3-204ENST00000357857 LCLAT1Q6UWP7 414 aa19.82■□□□□ 0.76
CLN3-204ENST00000357857 MMS22LQ6ZRQ5 1243 aa19.82■□□□□ 0.76
CLN3-204ENST00000357857 ZNF280BQ86YH2 543 aa19.82■□□□□ 0.76
CLN3-204ENST00000357857 CRYBG2Q8N1P7 616 aa19.82■□□□□ 0.76
CLN3-204ENST00000357857 TMEM86AQ8N2M4 240 aa19.82■□□□□ 0.76
CLN3-204ENST00000357857 C12orf29Q8N999 325 aa19.82■□□□□ 0.76
CLN3-204ENST00000357857 LRRC57Q8N9N7 239 aa19.82■□□□□ 0.76
CLN3-204ENST00000357857 NUP85Q9BW27 656 aa19.82■□□□□ 0.76
CLN3-204ENST00000357857 DPEP3Q9H4B8 488 aa19.82■□□□□ 0.76
CLN3-204ENST00000357857 PRDM5Q9NQX1 630 aaPredicted RBP19.82■□□□□ 0.76
CLN3-204ENST00000357857 UVRAGQ9P2Y5 699 aa19.82■□□□□ 0.76
CLN3-204ENST00000357857 M0QYV0 167 aa19.81■□□□□ 0.76
CLN3-204ENST00000357857 CALB1P05937 261 aa19.81■□□□□ 0.76
CLN3-204ENST00000357857 PTP4A2Q12974 167 aa19.81■□□□□ 0.76
CLN3-204ENST00000357857 TIGD5Q53EQ6 642 aa19.81■□□□□ 0.76
CLN3-204ENST00000357857 NPAS4Q8IUM7 802 aa19.81■□□□□ 0.76
CLN3-204ENST00000357857 SYCE1Q8N0S2 351 aa19.81■□□□□ 0.76
CLN3-204ENST00000357857 ZNF564Q8TBZ8 553 aaPredicted RBP19.81■□□□□ 0.76
CLN3-204ENST00000357857 FAM193BQ96PV7 902 aaPredicted RBP19.81■□□□□ 0.76
CLN3-204ENST00000357857 CHORDC1Q9UHD1 332 aaPredicted RBP19.81■□□□□ 0.76
CLN3-204ENST00000357857 TSPAN16Q9UKR8 245 aa19.81■□□□□ 0.76
CLN3-204ENST00000357857 MRFAP1Q9Y605 127 aa19.81■□□□□ 0.76
CLN3-204ENST00000357857 LTBP2Q14767 1821 aa19.81■□□□□ 0.76
CLN3-204ENST00000357857 GABRDO14764 452 aa19.8■□□□□ 0.76
CLN3-204ENST00000357857 KIAA0355O15063 1070 aa19.8■□□□□ 0.76
CLN3-204ENST00000357857 B4GALT3O60512 393 aa19.8■□□□□ 0.76
CLN3-204ENST00000357857 BUB1BO60566 1050 aaPredicted RBP19.8■□□□□ 0.76
CLN3-204ENST00000357857 FTCDO95954 541 aa19.8■□□□□ 0.76
CLN3-204ENST00000357857 TIMP1P01033 207 aa19.8■□□□□ 0.76
CLN3-204ENST00000357857 ODC1P11926 461 aa19.8■□□□□ 0.76
CLN3-204ENST00000357857 RRM1P23921 792 aa19.8■□□□□ 0.76
CLN3-204ENST00000357857 AMPD2Q01433 879 aa19.8■□□□□ 0.76
CLN3-204ENST00000357857 TUBB2AQ13885 445 aa19.8■□□□□ 0.76
CLN3-204ENST00000357857 IKBKEQ14164 716 aa19.8■□□□□ 0.76
CLN3-204ENST00000357857 GOLGA7BQ2TAP0 167 aa19.8■□□□□ 0.76
CLN3-204ENST00000357857 PAN2Q504Q3 1202 aaKnown RBP19.8■□□□□ 0.76
CLN3-204ENST00000357857 C2CD6Q53TS8 623 aa19.8■□□□□ 0.76
CLN3-204ENST00000357857 PPP1R26Q5T8A7 1209 aaPredicted RBP19.8■□□□□ 0.76
CLN3-204ENST00000357857 ARHGAP17Q68EM7 881 aa19.8■□□□□ 0.76
CLN3-204ENST00000357857 CD300LGQ6UXG3 332 aa19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms