RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 WDR70Q9NW82 654 aa20.38■□□□□ 0.85
CCDC88B-202ENST00000356786 ARHGEF37A1IGU5 675 aa20.38■□□□□ 0.85
CCDC88B-202ENST00000356786 C3orf70A6NLC5 250 aaPredicted RBP20.38■□□□□ 0.85
CCDC88B-202ENST00000356786 HLA-DRAP01903 254 aa20.38■□□□□ 0.85
CCDC88B-202ENST00000356786 CYP11B2P19099 503 aa20.38■□□□□ 0.85
CCDC88B-202ENST00000356786 RGS7P49802 495 aa20.38■□□□□ 0.85
CCDC88B-202ENST00000356786 AQP5P55064 265 aa20.38■□□□□ 0.85
CCDC88B-202ENST00000356786 ADRM1Q16186 407 aa20.38■□□□□ 0.85
CCDC88B-202ENST00000356786 SZRD1Q7Z422 152 aa20.38■□□□□ 0.85
CCDC88B-202ENST00000356786 TMEM237Q96Q45 408 aa20.38■□□□□ 0.85
CCDC88B-202ENST00000356786 MAP2P11137 1827 aaKnown RBP20.38■□□□□ 0.85
CCDC88B-202ENST00000356786 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP20.38■□□□□ 0.85
CCDC88B-202ENST00000356786 ZSCAN9O15535 394 aaPredicted RBP20.38■□□□□ 0.85
CCDC88B-202ENST00000356786 TRMT5Q32P41 509 aaKnown RBP20.38■□□□□ 0.85
CCDC88B-202ENST00000356786 KCND2Q9NZV8 630 aa20.38■□□□□ 0.85
CCDC88B-202ENST00000356786 NIPSNAP3AQ9UFN0 247 aaPredicted RBP20.38■□□□□ 0.85
CCDC88B-202ENST00000356786 TSR3Q9UJK0 312 aaKnown RBP20.38■□□□□ 0.85
CCDC88B-202ENST00000356786 AK9Q5TCS8 1911 aa20.38■□□□□ 0.85
CCDC88B-202ENST00000356786 AFF2P51816 1311 aa20.38■□□□□ 0.85
CCDC88B-202ENST00000356786 FKBP6O75344 327 aa20.38■□□□□ 0.85
CCDC88B-202ENST00000356786 SARSP49591 514 aaKnown RBP20.38■□□□□ 0.85
CCDC88B-202ENST00000356786 R3HDM1Q15032 1099 aaKnown RBP20.38■□□□□ 0.85
CCDC88B-202ENST00000356786 ZNF772Q68DY9 489 aaPredicted RBP20.38■□□□□ 0.85
CCDC88B-202ENST00000356786 SNRNP48Q6IEG0 339 aaKnown RBP20.38■□□□□ 0.85
CCDC88B-202ENST00000356786 TMCO5AQ8N6Q1 288 aa20.38■□□□□ 0.85
CCDC88B-202ENST00000356786 RFWD2Q8NHY2 731 aa20.38■□□□□ 0.85
CCDC88B-202ENST00000356786 OPTNQ96CV9 577 aa20.38■□□□□ 0.85
CCDC88B-202ENST00000356786 TMEM120AQ9BXJ8 343 aa20.38■□□□□ 0.85
CCDC88B-202ENST00000356786 CNOT7Q9UIV1 285 aaKnown RBP20.38■□□□□ 0.85
CCDC88B-202ENST00000356786 CCDC15Q0P6D6 951 aa20.37■□□□□ 0.85
CCDC88B-202ENST00000356786 OASLQ15646 514 aaKnown RBP20.37■□□□□ 0.85
CCDC88B-202ENST00000356786 ACAD10Q6JQN1 1059 aa20.37■□□□□ 0.85
CCDC88B-202ENST00000356786 LDHDQ86WU2 507 aa20.37■□□□□ 0.85
CCDC88B-202ENST00000356786 SIKE1Q9BRV8 207 aa20.37■□□□□ 0.85
CCDC88B-202ENST00000356786 SLC26A4O43511 780 aa20.37■□□□□ 0.85
CCDC88B-202ENST00000356786 GRAP2O75791 330 aa20.37■□□□□ 0.85
CCDC88B-202ENST00000356786 CDH2P19022 906 aaPredicted RBP20.37■□□□□ 0.85
CCDC88B-202ENST00000356786 MLH1P40692 756 aa20.37■□□□□ 0.85
CCDC88B-202ENST00000356786 DEFA1P59665 94 aa20.37■□□□□ 0.85
CCDC88B-202ENST00000356786 DEFA3P59666 94 aa20.37■□□□□ 0.85
CCDC88B-202ENST00000356786 TTMPQ5BVD1 217 aa20.37■□□□□ 0.85
CCDC88B-202ENST00000356786 PTPRN2Q92932 1015 aa20.37■□□□□ 0.85
CCDC88B-202ENST00000356786 AGPAT3Q9NRZ7 376 aa20.37■□□□□ 0.85
CCDC88B-202ENST00000356786 V9GYQ6 96 aa20.37■□□□□ 0.85
CCDC88B-202ENST00000356786 ALBP02768 609 aa20.37■□□□□ 0.85
CCDC88B-202ENST00000356786 POLBP06746 335 aa20.37■□□□□ 0.85
CCDC88B-202ENST00000356786 CSF1RP07333 972 aa20.37■□□□□ 0.85
CCDC88B-202ENST00000356786 SLC34A1Q06495 639 aa20.37■□□□□ 0.85
CCDC88B-202ENST00000356786 ARHGAP22Q7Z5H3 698 aa20.37■□□□□ 0.85
CCDC88B-202ENST00000356786 FBXO36Q8NEA4 188 aa20.37■□□□□ 0.85
CCDC88B-202ENST00000356786 KLHL4Q9C0H6 718 aa20.37■□□□□ 0.85
CCDC88B-202ENST00000356786 NFIBO00712 420 aa20.37■□□□□ 0.85
CCDC88B-202ENST00000356786 KIAA0391O15091 583 aaKnown RBP20.37■□□□□ 0.85
CCDC88B-202ENST00000356786 LCP1P13796 627 aa20.37■□□□□ 0.85
CCDC88B-202ENST00000356786 C1orf131Q8NDD1 294 aaKnown RBP20.37■□□□□ 0.85
CCDC88B-202ENST00000356786 VPS33BQ9H267 617 aa20.37■□□□□ 0.85
CCDC88B-202ENST00000356786 EPHB2P29323 1055 aa20.36■□□□□ 0.85
CCDC88B-202ENST00000356786 CASP4P49662 377 aa20.36■□□□□ 0.85
CCDC88B-202ENST00000356786 NUP107P57740 925 aa20.36■□□□□ 0.85
CCDC88B-202ENST00000356786 UBE3AQ05086 875 aa20.36■□□□□ 0.85
CCDC88B-202ENST00000356786 FAXCQ5TGI0 409 aa20.36■□□□□ 0.85
CCDC88B-202ENST00000356786 ATXN2LQ8WWM7 1075 aaKnown RBP20.36■□□□□ 0.85
CCDC88B-202ENST00000356786 TIPINQ9BVW5 301 aa20.36■□□□□ 0.85
CCDC88B-202ENST00000356786 RIPK2O43353 540 aa20.36■□□□□ 0.85
CCDC88B-202ENST00000356786 TMCC1O94876 653 aa20.36■□□□□ 0.85
CCDC88B-202ENST00000356786 RASA1P20936 1047 aa20.36■□□□□ 0.85
CCDC88B-202ENST00000356786 C2CD6Q53TS8 623 aa20.36■□□□□ 0.85
CCDC88B-202ENST00000356786 YTHDF3Q7Z739 585 aaKnown RBP20.36■□□□□ 0.85
CCDC88B-202ENST00000356786 ARHGEF1Q92888 912 aaKnown RBP20.36■□□□□ 0.85
CCDC88B-202ENST00000356786 DGAT1O75907 488 aa20.36■□□□□ 0.85
CCDC88B-202ENST00000356786 MOCS2O96007 188 aaPredicted RBP20.36■□□□□ 0.85
CCDC88B-202ENST00000356786 RXRBP28702 533 aa20.36■□□□□ 0.85
CCDC88B-202ENST00000356786 RBBP7Q16576 425 aa20.36■□□□□ 0.85
CCDC88B-202ENST00000356786 STK32AQ8WU08 396 aa20.36■□□□□ 0.85
CCDC88B-202ENST00000356786 PRCCQ92733 491 aaPredicted RBP20.36■□□□□ 0.85
CCDC88B-202ENST00000356786 TAGLN3Q9UI15 199 aa20.36■□□□□ 0.85
CCDC88B-202ENST00000356786 SLC37A4O43826 429 aa20.36■□□□□ 0.85
CCDC88B-202ENST00000356786 EFHC1Q5JVL4 640 aa20.36■□□□□ 0.85
CCDC88B-202ENST00000356786 TAGAPQ8N103 731 aa20.36■□□□□ 0.85
CCDC88B-202ENST00000356786 PAFAH2Q99487 392 aa20.36■□□□□ 0.85
CCDC88B-202ENST00000356786 AGXT2Q9BYV1 514 aa20.36■□□□□ 0.85
CCDC88B-202ENST00000356786 FRMD8Q9BZ67 464 aaPredicted RBP20.36■□□□□ 0.85
CCDC88B-202ENST00000356786 ILKAPQ9H0C8 392 aaPredicted RBP20.36■□□□□ 0.85
CCDC88B-202ENST00000356786 SNX13Q9Y5W8 968 aa20.36■□□□□ 0.85
CCDC88B-202ENST00000356786 PDE2AO00408 941 aaPredicted RBP20.35■□□□□ 0.85
CCDC88B-202ENST00000356786 STX5Q13190 355 aa20.35■□□□□ 0.85
CCDC88B-202ENST00000356786 NTRK3Q16288 839 aa20.35■□□□□ 0.85
CCDC88B-202ENST00000356786 SCN4BQ8IWT1 228 aa20.35■□□□□ 0.85
CCDC88B-202ENST00000356786 CASS4Q9NQ75 786 aa20.35■□□□□ 0.85
CCDC88B-202ENST00000356786 SGPL1O95470 568 aa20.35■□□□□ 0.85
CCDC88B-202ENST00000356786 THRAP10827 490 aa20.35■□□□□ 0.85
CCDC88B-202ENST00000356786 RAP1GDS1P52306 607 aa20.35■□□□□ 0.85
CCDC88B-202ENST00000356786 GPAT2Q6NUI2 795 aa20.35■□□□□ 0.85
CCDC88B-202ENST00000356786 ZNF677Q86XU0 584 aa20.35■□□□□ 0.85
CCDC88B-202ENST00000356786 RFC5P40937 340 aa20.35■□□□□ 0.85
CCDC88B-202ENST00000356786 MXD4Q14582 209 aaPredicted RBP20.35■□□□□ 0.85
CCDC88B-202ENST00000356786 RNF149Q8NC42 400 aa20.35■□□□□ 0.85
CCDC88B-202ENST00000356786 ZNF669Q96BR6 464 aaPredicted RBP20.35■□□□□ 0.85
CCDC88B-202ENST00000356786 A0A0A6YYK5 440 aaPredicted RBP20.35■□□□□ 0.85
CCDC88B-202ENST00000356786 RPS6KA5O75582 802 aa20.35■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms