RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 AFAP1L2Q8N4X5 818 aa2.54□□□□□ -2
VPS54-202ENST00000354504 IQUBQ8NA54 791 aa2.54□□□□□ -2
VPS54-202ENST00000354504 KREMEN2Q8NCW0 462 aa2.54□□□□□ -2
VPS54-202ENST00000354504 CTCFLQ8NI51 663 aaPredicted RBP2.54□□□□□ -2
VPS54-202ENST00000354504 SYN2Q92777 582 aaPredicted RBP2.54□□□□□ -2
VPS54-202ENST00000354504 SMARCE1Q969G3 411 aa2.54□□□□□ -2
VPS54-202ENST00000354504 RRP36Q96EU6 259 aaKnown RBP2.54□□□□□ -2
VPS54-202ENST00000354504 EIF2AK1Q9BQI3 630 aaKnown RBP2.54□□□□□ -2
VPS54-202ENST00000354504 HERPUD2Q9BSE4 406 aa2.54□□□□□ -2
VPS54-202ENST00000354504 DESI2Q9BSY9 194 aa2.54□□□□□ -2
VPS54-202ENST00000354504 FOXP3Q9BZS1 431 aa2.54□□□□□ -2
VPS54-202ENST00000354504 PLCB1Q9NQ66 1216 aa2.54□□□□□ -2
VPS54-202ENST00000354504 PXMP2Q9NR77 195 aa2.54□□□□□ -2
VPS54-202ENST00000354504 GPRC5DQ9NZD1 345 aa2.54□□□□□ -2
VPS54-202ENST00000354504 RGL1Q9NZL6 768 aa2.54□□□□□ -2
VPS54-202ENST00000354504 ANKFY1Q9P2R3 1169 aa2.54□□□□□ -2
VPS54-202ENST00000354504 GABBR1Q9UBS5 961 aa2.54□□□□□ -2
VPS54-202ENST00000354504 DBR1Q9UK59 544 aaKnown RBP2.54□□□□□ -2
VPS54-202ENST00000354504 NAP1L2Q9ULW6 460 aaPredicted RBP2.54□□□□□ -2
VPS54-202ENST00000354504 NCANO14594 1321 aa2.54□□□□□ -2
VPS54-202ENST00000354504 PLXND1Q9Y4D7 1925 aa2.54□□□□□ -2
VPS54-202ENST00000354504 hCG_2014768A0A024R1R8 64 aa2.54□□□□□ -2
VPS54-202ENST00000354504 B4DLN1 442 aa2.54□□□□□ -2
VPS54-202ENST00000354504 EIF3CLB5ME19 914 aaKnown RBP2.54□□□□□ -2
VPS54-202ENST00000354504 H3BQF6 201 aa2.54□□□□□ -2
VPS54-202ENST00000354504 CPLX1O14810 134 aa2.54□□□□□ -2
VPS54-202ENST00000354504 ARHGAP6O43182 974 aa2.54□□□□□ -2
VPS54-202ENST00000354504 CLEC3AO75596 197 aa2.54□□□□□ -2
VPS54-202ENST00000354504 ARIH2O95376 493 aa2.54□□□□□ -2
VPS54-202ENST00000354504 SYF2O95926 243 aaKnown RBP2.54□□□□□ -2
VPS54-202ENST00000354504 PIGRP01833 764 aa2.54□□□□□ -2
VPS54-202ENST00000354504 TPM2P07951 284 aa2.54□□□□□ -2
VPS54-202ENST00000354504 PABPC1P11940 636 aaKnown RBP2.54□□□□□ -2
VPS54-202ENST00000354504 BMP3P12645 472 aa2.54□□□□□ -2
VPS54-202ENST00000354504 GCFC2P16383 781 aaKnown RBP2.54□□□□□ -2
VPS54-202ENST00000354504 ACO1P21399 889 aaKnown RBP2.54□□□□□ -2
VPS54-202ENST00000354504 RPS12P25398 132 aaKnown RBP2.54□□□□□ -2
VPS54-202ENST00000354504 HOXA7P31268 230 aaPredicted RBP2.54□□□□□ -2
VPS54-202ENST00000354504 GNAQP50148 359 aa2.54□□□□□ -2
VPS54-202ENST00000354504 ZNF132P52740 706 aa2.54□□□□□ -2
VPS54-202ENST00000354504 HADHBP55084 474 aaKnown RBP2.54□□□□□ -2
VPS54-202ENST00000354504 STX17P56962 302 aa2.54□□□□□ -2
VPS54-202ENST00000354504 NLRP5P59047 1200 aa2.54□□□□□ -2
VPS54-202ENST00000354504 ADAM17P78536 824 aa2.54□□□□□ -2
VPS54-202ENST00000354504 ICA1Q05084 483 aa2.54□□□□□ -2
VPS54-202ENST00000354504 ENPEPQ07075 957 aa2.54□□□□□ -2
VPS54-202ENST00000354504 TNK2Q07912 1038 aa2.54□□□□□ -2
VPS54-202ENST00000354504 CALCRLQ16602 461 aa2.54□□□□□ -2
VPS54-202ENST00000354504 LETM2Q2VYF4 491 aa2.54□□□□□ -2
VPS54-202ENST00000354504 EDRF1Q3B7T1 1238 aa2.54□□□□□ -2
VPS54-202ENST00000354504 VWA3BQ502W6 1294 aa2.54□□□□□ -2
VPS54-202ENST00000354504 MEX3CQ5U5Q3 659 aaKnown RBP2.54□□□□□ -2
VPS54-202ENST00000354504 PDXDC1Q6P996 788 aa2.54□□□□□ -2
VPS54-202ENST00000354504 CCDC73Q6ZRK6 1079 aa2.54□□□□□ -2
VPS54-202ENST00000354504 ZNF571Q7Z3V5 609 aaPredicted RBP2.54□□□□□ -2
VPS54-202ENST00000354504 CPNE8Q86YQ8 564 aa2.54□□□□□ -2
VPS54-202ENST00000354504 KSR1Q8IVT5 923 aa2.54□□□□□ -2
VPS54-202ENST00000354504 PHF6Q8IWS0 365 aaKnown RBP eCLIP2.54□□□□□ -2
VPS54-202ENST00000354504 NOA1Q8NC60 698 aaKnown RBP2.54□□□□□ -2
VPS54-202ENST00000354504 CCDC150Q8NCX0 1101 aa2.54□□□□□ -2
VPS54-202ENST00000354504 USP6NLQ92738 828 aa2.54□□□□□ -2
VPS54-202ENST00000354504 SEMA4DQ92854 862 aa2.54□□□□□ -2
VPS54-202ENST00000354504 CHMP4CQ96CF2 233 aa2.54□□□□□ -2
VPS54-202ENST00000354504 CNOT6LQ96LI5 555 aaKnown RBP2.54□□□□□ -2
VPS54-202ENST00000354504 EIF3CQ99613 913 aaKnown RBP2.54□□□□□ -2
VPS54-202ENST00000354504 MXRA8Q9BRK3 442 aa2.54□□□□□ -2
VPS54-202ENST00000354504 PACSIN1Q9BY11 444 aa2.54□□□□□ -2
VPS54-202ENST00000354504 RNF208Q9H0X6 261 aa2.54□□□□□ -2
VPS54-202ENST00000354504 CYP39A1Q9NYL5 469 aa2.54□□□□□ -2
VPS54-202ENST00000354504 CEP131Q9UPN4 1083 aa2.54□□□□□ -2
VPS54-202ENST00000354504 ATP8A1Q9Y2Q0 1164 aa2.54□□□□□ -2
VPS54-202ENST00000354504 COQ6Q9Y2Z9 468 aa2.54□□□□□ -2
VPS54-202ENST00000354504 PCDHA9Q9Y5H5 950 aa2.54□□□□□ -2
VPS54-202ENST00000354504 WDFY4Q6ZS81 3184 aa2.54□□□□□ -2
VPS54-202ENST00000354504 C2orf16Q68DN1 1984 aa2.54□□□□□ -2
VPS54-202ENST00000354504 PLXNA2O75051 1894 aa2.54□□□□□ -2
VPS54-202ENST00000354504 CLRN2A0PK11 232 aa2.54□□□□□ -2
VPS54-202ENST00000354504 MAPK13O15264 365 aa2.54□□□□□ -2
VPS54-202ENST00000354504 EIF3DO15371 548 aaKnown RBP eCLIP2.54□□□□□ -2
VPS54-202ENST00000354504 CTNND1O60716 968 aaKnown RBP2.54□□□□□ -2
VPS54-202ENST00000354504 NDUFA10O95299 355 aa2.54□□□□□ -2
VPS54-202ENST00000354504 VNN1O95497 513 aa2.54□□□□□ -2
VPS54-202ENST00000354504 CST3P01034 146 aaPredicted RBP2.54□□□□□ -2
VPS54-202ENST00000354504 ATP1A1P05023 1023 aaKnown RBP2.54□□□□□ -2
VPS54-202ENST00000354504 PLA2G4BP0C869 781 aa2.54□□□□□ -2
VPS54-202ENST00000354504 ALAS1P13196 640 aa2.54□□□□□ -2
VPS54-202ENST00000354504 TNFRSF8P28908 595 aa2.54□□□□□ -2
VPS54-202ENST00000354504 GBP1P32455 592 aa2.54□□□□□ -2
VPS54-202ENST00000354504 GMPSP49915 693 aaPredicted RBP2.54□□□□□ -2
VPS54-202ENST00000354504 NAPAP54920 295 aa2.54□□□□□ -2
VPS54-202ENST00000354504 GSDMDP57764 484 aa2.54□□□□□ -2
VPS54-202ENST00000354504 IFRD2Q12894 506 aaPredicted RBP2.54□□□□□ -2
VPS54-202ENST00000354504 BRDTQ58F21 947 aaPredicted RBP2.54□□□□□ -2
VPS54-202ENST00000354504 CDCA2Q69YH5 1023 aaPredicted RBP2.54□□□□□ -2
VPS54-202ENST00000354504 ADAT2Q7Z6V5 191 aaKnown RBP2.54□□□□□ -2
VPS54-202ENST00000354504 VSIG10LQ86VR7 867 aa2.54□□□□□ -2
VPS54-202ENST00000354504 LDHDQ86WU2 507 aa2.54□□□□□ -2
VPS54-202ENST00000354504 DNAAF5Q86Y56 855 aa2.54□□□□□ -2
VPS54-202ENST00000354504 NXPE1Q8N323 547 aa2.54□□□□□ -2
VPS54-202ENST00000354504 RASGEF1CQ8N431 466 aa2.54□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms