RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 RAB33AQ14088 237 aa23.68■■□□□ 1.38
SHMT1-203ENST00000354098 PTPN21Q16825 1174 aa23.68■■□□□ 1.38
SHMT1-203ENST00000354098 CCDC142Q17RM4 750 aa23.68■■□□□ 1.38
SHMT1-203ENST00000354098 FKBP15Q5T1M5 1219 aa23.68■■□□□ 1.38
SHMT1-203ENST00000354098 LLGL2Q6P1M3 1020 aa23.68■■□□□ 1.38
SHMT1-203ENST00000354098 LRRTM3Q86VH5 581 aa23.68■■□□□ 1.38
SHMT1-203ENST00000354098 VN1R2Q8NFZ6 395 aa23.68■■□□□ 1.38
SHMT1-203ENST00000354098 ACBD6Q9BR61 282 aa23.68■■□□□ 1.38
SHMT1-203ENST00000354098 ZCWPW1Q9H0M4 648 aa23.68■■□□□ 1.38
SHMT1-203ENST00000354098 CYP3A43Q9HB55 503 aa23.68■■□□□ 1.38
SHMT1-203ENST00000354098 RTN4Q9NQC3 1192 aaKnown RBP23.68■■□□□ 1.38
SHMT1-203ENST00000354098 HCFC2Q9Y5Z7 792 aa23.68■■□□□ 1.38
SHMT1-203ENST00000354098 A8MXQ7 604 aa23.67■■□□□ 1.38
SHMT1-203ENST00000354098 TGM5O43548 720 aa23.67■■□□□ 1.38
SHMT1-203ENST00000354098 EPCAMP16422 314 aa23.67■■□□□ 1.38
SHMT1-203ENST00000354098 ORC1Q13415 861 aa23.67■■□□□ 1.38
SHMT1-203ENST00000354098 SLC22A17Q8WUG5 538 aa23.67■■□□□ 1.38
SHMT1-203ENST00000354098 FAXDC2Q96IV6 333 aa23.67■■□□□ 1.38
SHMT1-203ENST00000354098 LPIN3Q9BQK8 851 aa23.67■■□□□ 1.38
SHMT1-203ENST00000354098 DPEP3Q9H4B8 488 aa23.67■■□□□ 1.38
SHMT1-203ENST00000354098 CPB1P15086 417 aa23.67■■□□□ 1.38
SHMT1-203ENST00000354098 NDST1P52848 882 aa23.67■■□□□ 1.38
SHMT1-203ENST00000354098 PSMC1P62191 440 aaKnown RBP23.67■■□□□ 1.38
SHMT1-203ENST00000354098 KCNC3Q14003 757 aa23.67■■□□□ 1.38
SHMT1-203ENST00000354098 LILRA6Q6PI73 481 aa23.67■■□□□ 1.38
SHMT1-203ENST00000354098 RNF19BQ6ZMZ0 732 aa23.67■■□□□ 1.38
SHMT1-203ENST00000354098 KREMEN1Q96MU8 473 aa23.67■■□□□ 1.38
SHMT1-203ENST00000354098 TWNKQ96RR1 684 aa23.67■■□□□ 1.38
SHMT1-203ENST00000354098 CDCA3Q99618 268 aaPredicted RBP23.67■■□□□ 1.38
SHMT1-203ENST00000354098 ANP32EQ9BTT0 268 aa23.67■■□□□ 1.38
SHMT1-203ENST00000354098 OXCT2Q9BYC2 517 aaPredicted RBP23.67■■□□□ 1.38
SHMT1-203ENST00000354098 UBE2TQ9NPD8 197 aaPredicted RBP23.67■■□□□ 1.38
SHMT1-203ENST00000354098 CISHQ9NSE2 258 aa23.67■■□□□ 1.38
SHMT1-203ENST00000354098 A0A1B0GTH6 734 aa23.66■■□□□ 1.38
SHMT1-203ENST00000354098 ABLIM3O94929 683 aa23.66■■□□□ 1.38
SHMT1-203ENST00000354098 INCA1Q0VD86 236 aa23.66■■□□□ 1.38
SHMT1-203ENST00000354098 SYCP1Q15431 976 aa23.66■■□□□ 1.38
SHMT1-203ENST00000354098 SLC39A12Q504Y0 691 aa23.66■■□□□ 1.38
SHMT1-203ENST00000354098 ZNF461Q8TAF7 563 aa23.66■■□□□ 1.38
SHMT1-203ENST00000354098 WHAMMQ8TF30 809 aa23.66■■□□□ 1.38
SHMT1-203ENST00000354098 PGLYRP2Q96PD5 576 aa23.66■■□□□ 1.38
SHMT1-203ENST00000354098 LSM14BQ9BX40 385 aaKnown RBP23.66■■□□□ 1.38
SHMT1-203ENST00000354098 TMLHEQ9NVH6 421 aa23.66■■□□□ 1.38
SHMT1-203ENST00000354098 APEX2Q9UBZ4 518 aa23.66■■□□□ 1.38
SHMT1-203ENST00000354098 GTF3C4Q9UKN8 822 aa23.66■■□□□ 1.38
SHMT1-203ENST00000354098 BARX2Q9UMQ3 279 aaPredicted RBP23.66■■□□□ 1.38
SHMT1-203ENST00000354098 MYBPHLA2RUH7 354 aa23.65■■□□□ 1.38
SHMT1-203ENST00000354098 CILPO75339 1184 aa23.65■■□□□ 1.38
SHMT1-203ENST00000354098 VNN2O95498 520 aa23.65■■□□□ 1.38
SHMT1-203ENST00000354098 GLP2RO95838 553 aa23.65■■□□□ 1.38
SHMT1-203ENST00000354098 GLUD1P00367 558 aa23.65■■□□□ 1.38
SHMT1-203ENST00000354098 TBXAS1P24557 533 aaPredicted RBP23.65■■□□□ 1.38
SHMT1-203ENST00000354098 PCSK1P29120 753 aa23.65■■□□□ 1.38
SHMT1-203ENST00000354098 GCNT1Q02742 428 aa23.65■■□□□ 1.38
SHMT1-203ENST00000354098 GPR17Q13304 367 aa23.65■■□□□ 1.38
SHMT1-203ENST00000354098 FILIP1LQ4L180 1135 aa23.65■■□□□ 1.38
SHMT1-203ENST00000354098 INTS6LQ5JSJ4 861 aaKnown RBP23.65■■□□□ 1.38
SHMT1-203ENST00000354098 PPFIBP1Q86W92 1011 aa23.65■■□□□ 1.38
SHMT1-203ENST00000354098 EFHBQ8N7U6 833 aa23.65■■□□□ 1.38
SHMT1-203ENST00000354098 PKMYT1Q99640 499 aa23.65■■□□□ 1.38
SHMT1-203ENST00000354098 SYT15Q9BQS2 421 aa23.65■■□□□ 1.38
SHMT1-203ENST00000354098 CRTAC1Q9NQ79 661 aa23.65■■□□□ 1.38
SHMT1-203ENST00000354098 AJAP1Q9UKB5 411 aaPredicted RBP23.65■■□□□ 1.38
SHMT1-203ENST00000354098 CDH9Q9ULB4 789 aa23.65■■□□□ 1.38
SHMT1-203ENST00000354098 SIK3Q9Y2K2 1263 aa23.65■■□□□ 1.38
SHMT1-203ENST00000354098 PLXNA3P51805 1871 aa23.64■■□□□ 1.38
SHMT1-203ENST00000354098 TSPY1Q01534 308 aa23.64■■□□□ 1.38
SHMT1-203ENST00000354098 ADAM15Q13444 863 aa23.64■■□□□ 1.38
SHMT1-203ENST00000354098 NR1I3Q14994 352 aa23.64■■□□□ 1.38
SHMT1-203ENST00000354098 ZNF394Q53GI3 561 aa23.64■■□□□ 1.38
SHMT1-203ENST00000354098 UBR7Q8N806 425 aa23.64■■□□□ 1.38
SHMT1-203ENST00000354098 ACO1P21399 889 aaKnown RBP23.64■■□□□ 1.37
SHMT1-203ENST00000354098 UBASH3AP57075 661 aa23.64■■□□□ 1.37
SHMT1-203ENST00000354098 ADCY1Q08828 1119 aa23.64■■□□□ 1.37
SHMT1-203ENST00000354098 KLHDC7AQ5VTJ3 777 aa23.64■■□□□ 1.37
SHMT1-203ENST00000354098 ACOT1Q86TX2 421 aa23.64■■□□□ 1.37
SHMT1-203ENST00000354098 ERGIC2Q96RQ1 377 aa23.64■■□□□ 1.37
SHMT1-203ENST00000354098 ELOVL4Q9GZR5 314 aa23.64■■□□□ 1.37
SHMT1-203ENST00000354098 IFNKQ9P0W0 207 aa23.64■■□□□ 1.37
SHMT1-203ENST00000354098 PTPN1P18031 435 aaKnown RBP23.63■■□□□ 1.37
SHMT1-203ENST00000354098 CTC1Q2NKJ3 1217 aa23.63■■□□□ 1.37
SHMT1-203ENST00000354098 FAM171BQ6P995 826 aa23.63■■□□□ 1.37
SHMT1-203ENST00000354098 UNC93AQ86WB7 457 aa23.63■■□□□ 1.37
SHMT1-203ENST00000354098 DCP1BQ8IZD4 617 aaKnown RBP23.63■■□□□ 1.37
SHMT1-203ENST00000354098 ATAD1Q8NBU5 361 aa23.63■■□□□ 1.37
SHMT1-203ENST00000354098 KREMEN2Q8NCW0 462 aa23.63■■□□□ 1.37
SHMT1-203ENST00000354098 FAM207AQ9NSI2 230 aaPredicted RBP23.63■■□□□ 1.37
SHMT1-203ENST00000354098 CLDND1Q9NY35 253 aa23.63■■□□□ 1.37
SHMT1-203ENST00000354098 DNAJC12Q9UKB3 198 aa23.63■■□□□ 1.37
SHMT1-203ENST00000354098 MTMR11A4FU01 709 aa23.62■■□□□ 1.37
SHMT1-203ENST00000354098 EPHB6O15197 1021 aa23.62■■□□□ 1.37
SHMT1-203ENST00000354098 NOL4O94818 638 aa23.62■■□□□ 1.37
SHMT1-203ENST00000354098 SEC24AO95486 1093 aa23.62■■□□□ 1.37
SHMT1-203ENST00000354098 ATF2P15336 505 aa23.62■■□□□ 1.37
SHMT1-203ENST00000354098 DLX2Q07687 328 aaPredicted RBP23.62■■□□□ 1.37
SHMT1-203ENST00000354098 ARHGAP44Q17R89 818 aa23.62■■□□□ 1.37
SHMT1-203ENST00000354098 MDH1BQ5I0G3 518 aa23.62■■□□□ 1.37
SHMT1-203ENST00000354098 TPGS2Q68CL5 300 aa23.62■■□□□ 1.37
SHMT1-203ENST00000354098 IQCEQ6IPM2 695 aa23.62■■□□□ 1.37
SHMT1-203ENST00000354098 EP400NLQ6ZTU2 488 aa23.62■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms